Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PRCOL_00003498 Prasinoderma coloniale HOM05D005532 ORTHO05D006873 2.3e-154 548.9 289 100.0
FvH4_3g28350 Fragaria vesca HOM05D005532 ORTHO05D006873 8.3e-51 204.9 336 36.9
FAN16G3415 Fragaria x ananassa HOM05D005532 ORTHO05D006873 8.3e-51 204.9 336 36.9
FAN25G0557 Fragaria x ananassa HOM05D005532 ORTHO05D006873 8.3e-51 204.9 336 36.9
arahy.Tifrunner.gnm1.ann1.3FY9NR Arachis hypogaea HOM05D005532 ORTHO05D006873 1.8e-50 203.8 340 36.5
MD11G1188300 Malus domestica HOM05D005532 ORTHO05D006873 1.8e-50 203.8 339 36.3
Migut.D00633 Erythranthe guttata HOM05D005532 ORTHO05D006873 4.1e-50 202.6 344 35.2
arahy.Tifrunner.gnm1.ann1.7Y4SN4 Arachis hypogaea HOM05D005532 ORTHO05D006873 5.4e-50 202.2 340 36.5
FAN21G2390 Fragaria x ananassa HOM05D005532 ORTHO05D006873 1.2e-49 201.1 336 36.3
unitig_52.g16880 Utricularia gibba HOM05D005532 ORTHO05D006873 2.7e-49 199.9 344 36.3
Lj3g0021729 Lotus japonicus HOM05D005532 ORTHO05D006873 3.5e-49 199.5 339 35.1
Medtr4g076230 Medicago truncatula HOM05D005532 ORTHO05D006873 3.5e-49 199.5 341 35.2
Actinidia23981 Actinidia chinensis HOM05D005532 ORTHO05D006873 4.5e-49 199.1 339 36.3
SGA_v2.0_scaffold29G12299 Striga asiatica HOM05D005532 ORTHO05D006873 4.5e-49 199.1 343 36.4
Actinidia11667 Actinidia chinensis HOM05D005532 ORTHO05D006873 7.7e-49 198.4 339 36.0
Ciclev10015321m.g Citrus clementina HOM05D005532 ORTHO05D006873 1.0e-48 198.0 339 35.7
PSO339G2797 Papaver somniferum HOM05D005532 ORTHO05D006873 1.0e-48 198.0 335 35.8
Prupe.4G256000 Prunus persica HOM05D005532 ORTHO05D006873 1.0e-48 198.0 335 37.0
RcHm_v2.0_Chr5g0053381 Rosa chinensis HOM05D005532 ORTHO05D006873 1.0e-48 198.0 336 36.6
PSO384G4693 Papaver somniferum HOM05D005532 ORTHO05D006873 1.3e-48 197.6 335 36.1
PGR119G0320 Punica granatum HOM05D005532 ORTHO05D006873 1.7e-48 197.2 339 35.4
Cpa.g.sc892.3 Carica papaya HOM05D005532 ORTHO05D006873 2.3e-48 196.8 339 35.4
BcaB07g33482 Brassica carinata HOM05D005532 ORTHO05D006873 2.9e-48 196.4 336 36.0
CSS0007885 Camellia sinensis var. sinensis HOM05D005532 ORTHO05D006873 2.9e-48 196.4 339 36.3
CiPaw.13G154000 Carya illinoinensis HOM05D005532 ORTHO05D006873 2.9e-48 196.4 339 36.0
Lalb_Chr19g0139721 Lupinus albus HOM05D005532 ORTHO05D006873 2.9e-48 196.4 339 35.7
Oeu043291.1 Olea europaea HOM05D005532 ORTHO05D006873 3.8e-48 196.1 339 35.7
A06p03120 Brassica napus HOM05D005532 ORTHO05D006873 6.6e-48 195.3 328 36.6
BraA06t23525Z Brassica rapa HOM05D005532 ORTHO05D006873 6.6e-48 195.3 328 36.6
TPR.G22568 Trifolium pratense HOM05D005532 ORTHO05D006873 6.6e-48 195.3 339 34.8
C06p05640 Brassica napus HOM05D005532 ORTHO05D006873 1.1e-47 194.5 328 36.6
BolC6t35671H Brassica oleracea HOM05D005532 ORTHO05D006873 1.1e-47 194.5 328 36.6
HPP92_011271 Vanilla planifolia HOM05D005532 ORTHO05D006873 1.1e-47 194.5 335 35.5
Zm00001eb093270 Zea mays HOM05D005532 ORTHO05D006873 1.1e-47 194.5 335 35.8
Nn7g36397 Nelumbo nucifera HOM05D005532 ORTHO05D006873 1.5e-47 194.1 339 36.0
TAR636G1137 Trochodendron aralioides HOM05D005532 ORTHO05D006873 1.9e-47 193.7 339 34.8
Sp1g37280 Schrenkiella parvula HOM05D005532 ORTHO05D006873 2.5e-47 193.4 339 35.1
Glyma.12G021500 Glycine max HOM05D005532 ORTHO05D006873 3.3e-47 193.0 338 34.9
Mapoly0066s0102 Marchantia polymorpha HOM05D005532 ORTHO05D006873 4.2e-47 192.6 337 35.3
Ah.04g162030 Amaranthus hybridus HOM05D005532 ORTHO05D006873 5.5e-47 192.2 252 42.1
Manes.14G005300 Manihot esculenta HOM05D005532 ORTHO05D006873 5.5e-47 192.2 330 36.4
BcaC08g43214 Brassica carinata HOM05D005532 ORTHO05D006873 7.2e-47 191.8 336 35.4
TWI60G0905 Tripterygium wilfordii HOM05D005532 ORTHO05D006873 7.2e-47 191.8 336 35.7
HPP92_011292 Vanilla planifolia HOM05D005532 ORTHO05D006873 7.2e-47 191.8 335 35.2
Phvul.011G078100 Phaseolus vulgaris HOM05D005532 ORTHO05D006873 9.5e-47 191.4 338 34.9
Solyc11g065240.2 Solanum lycopersicum HOM05D005532 ORTHO05D006873 9.5e-47 191.4 338 35.2
AT1G50450 Arabidopsis thaliana HOM05D005532 ORTHO05D006873 1.6e-46 190.7 339 34.2
Os12g0137200 Oryza sativa ssp. japonica HOM05D005532 ORTHO05D006873 1.6e-46 190.7 336 34.5
Sopen11g024960 Solanum pennellii HOM05D005532 ORTHO05D006873 1.6e-46 190.7 338 34.9
Thecc.09G240600 Theobroma cacao HOM05D005532 ORTHO05D006873 1.6e-46 190.7 344 34.6
Dinv36220 Davidia involucrata HOM05D005532 ORTHO05D006873 2.1e-46 190.3 339 35.1
HanXRQChr02g0051521 Helianthus annuus HOM05D005532 ORTHO05D006873 2.1e-46 190.3 344 34.0
AL1G58090 Arabidopsis lyrata HOM05D005532 ORTHO05D006873 2.8e-46 189.9 339 34.5
Carub.0001s3953 Capsella rubella HOM05D005532 ORTHO05D006873 2.8e-46 189.9 339 34.2
Atru.chr3.2637 Acer truncatum HOM05D005532 ORTHO05D006873 3.6e-46 189.5 339 35.4
CANSAT54G2729 Cannabis sativa HOM05D005532 ORTHO05D006873 3.6e-46 189.5 339 34.8
HanXRQChr13g0401441 Helianthus annuus HOM05D005532 ORTHO05D006873 4.7e-46 189.1 336 34.5
AagrBONN_evm.TU.Sc2ySwM_117.1967 Anthoceros agrestis HOM05D005532 ORTHO05D006873 6.1e-46 188.7 337 36.8
PGSC0003DMG400038188 Solanum tuberosum HOM05D005532 ORTHO05D006873 6.1e-46 188.7 338 34.6
Aqoxy2G00249 Aquilegia oxysepala HOM05D005532 ORTHO05D006873 8.0e-46 188.3 336 34.8
THA.LOC104821584 Tarenaya hassleriana HOM05D005532 ORTHO05D006873 8.0e-46 188.3 336 35.4
Lsat_1_v5_gn_6_26061 Lactuca sativa HOM05D005532 ORTHO05D006873 1.0e-45 188.0 339 33.9
GSVIVG01031546001 Vitis vinifera HOM05D005532 ORTHO05D006873 1.4e-45 187.6 339 35.7
Aa31LG10G3830 Aethionema arabicum HOM05D005532 ORTHO05D006873 3.0e-45 186.4 332 35.2
Psat7g179480 Pisum sativum HOM05D005532 ORTHO05D006873 3.0e-45 186.4 372 32.5
Cc01_g02130 Coffea canephora HOM05D005532 ORTHO05D006873 4.0e-45 186.0 338 33.4
RhsimUnG0131400 Rhododendron simsii HOM05D005532 ORTHO05D006873 5.2e-45 185.7 347 34.0
Thhalv10011503m.g Eutrema salsugineum HOM05D005532 ORTHO05D006873 8.9e-45 184.9 339 33.9
MCO10G311 Micromonas commoda HOM05D005532 ORTHO05D006873 1.2e-44 184.5 345 35.7
Duzib168G1386 Durio zibethinus HOM05D005532 ORTHO05D006873 1.5e-44 184.1 339 34.5
arahy.Tifrunner.gnm1.ann1.PT8LN6 Arachis hypogaea HOM05D005532 ORTHO05D006873 2.6e-44 183.3 340 34.7
Gohir.D07G126700 Gossypium hirsutum HOM05D005532 ORTHO05D006873 2.6e-44 183.3 339 33.3
Gorai.001G136900 Gossypium raimondii HOM05D005532 ORTHO05D006873 2.6e-44 183.3 339 33.6
Potri.009G050100 Populus trichocarpa HOM05D005532 ORTHO05D006873 3.4e-44 183.0 336 34.5
Eucgr.J00735 Eucalyptus grandis HOM05D005532 ORTHO05D006873 4.4e-44 182.6 339 33.3
ECA233G0258 Erigeron canadensis HOM05D005532 ORTHO05D006873 5.7e-44 182.2 339 33.3
Nitab4.5_0011829g0040 Nicotiana tabacum HOM05D005532 ORTHO05D006873 9.8e-44 181.4 338 33.1
CAN.G870.1 Capsicum annuum HOM05D005532 ORTHO05D006873 1.7e-43 180.6 338 33.7
Hund07456 Selenicereus undatus HOM05D005532 ORTHO05D006873 3.7e-43 179.5 336 34.5
Rhsim01G0193400 Rhododendron simsii HOM05D005532 ORTHO05D006873 4.9e-43 179.1 361 33.0
Cfa009820 Carpinus fangiana HOM05D005532 ORTHO05D006873 8.3e-43 178.3 314 36.3
Lj1A319T38 Lonicera japonica HOM05D005532 ORTHO05D006873 4.1e-42 176.0 378 32.3
VMungo1127G1594 Vigna mungo HOM05D005532 ORTHO05D006873 4.1e-42 176.0 314 36.0
Hma1.2p1_2169F.1_g315920 Hydrangea macrophylla HOM05D005532 ORTHO05D006873 1.2e-41 174.5 333 34.2
Glyma.11G095400 Glycine max HOM05D005532 ORTHO05D006873 1.6e-41 174.1 292 37.3
COL.COLO4_36473 Corchorus olitorius HOM05D005532 ORTHO05D006873 2.7e-41 173.3 336 34.8
Haze_23183 Corylus avellana HOM05D005532 ORTHO05D006873 1.0e-40 171.4 394 31.7
MELO3C014575.2 Cucumis melo HOM05D005532 ORTHO05D006873 1.0e-40 171.4 336 32.1
EL10Ac4g10189 Beta vulgaris HOM05D005532 ORTHO05D006873 1.3e-40 171.0 321 34.9
Sed0019503 Sechium edule HOM05D005532 ORTHO05D006873 3.9e-40 169.5 336 31.8
AUR62000162 Chenopodium quinoa HOM05D005532 ORTHO05D006873 1.9e-39 167.2 290 35.9
CDE04G2597 Ceratophyllum demersum HOM05D005532 ORTHO05D006873 2.5e-39 166.8 343 31.8
Lsat_1_v5_gn_6_26080 Lactuca sativa HOM05D005532 ORTHO05D006873 2.5e-39 166.8 316 34.2
Cre16.g666050 Chlamydomonas reinhardtii HOM05D005532 ORTHO05D006873 5.6e-39 165.6 346 34.7
AUR62039849 Chenopodium quinoa HOM05D005532 ORTHO05D006873 1.6e-38 164.1 290 35.2
Sabra09G0036700 Salix brachista HOM05D005532 ORTHO05D006873 1.6e-38 164.1 290 35.2
unitig_62.g23891 Utricularia gibba HOM05D005532 ORTHO05D006873 1.6e-38 164.1 318 34.6
Haze_23184 Corylus avellana HOM05D005532 ORTHO05D006873 2.8e-38 163.3 292 36.0
AUR62039851 Chenopodium quinoa HOM05D005532 ORTHO05D006873 6.1e-38 162.2 332 33.4
vmacro14267 Vaccinium macrocarpon HOM05D005532 ORTHO05D006873 2.3e-37 160.2 383 30.0
Hund07457 Selenicereus undatus HOM05D005532 ORTHO05D006873 1.2e-36 157.9 290 35.2
Nitab4.5_0005230g0080 Nicotiana tabacum HOM05D005532 ORTHO05D006873 2.7e-33 146.7 338 30.2
DCAR_023774 Daucus carota HOM05D005532 ORTHO05D006873 5.0e-32 142.5 302 31.8
Aa31LG10G3840 Aethionema arabicum HOM05D005532 ORTHO05D006873 2.5e-31 140.2 316 32.0
Peaxi162Scf00004g00378 Petunia axillaris HOM05D005532 ORTHO05D006873 3.6e-30 136.3 265 32.5
SMO367G1041 Selaginella moellendorffii HOM05D005532 ORTHO05D006873 3.6e-30 136.3 293 31.7
Pp3c19_6050 Physcomitrium patens HOM05D005532 ORTHO05D006873 3.1e-29 133.3 263 34.6
arahy.Tifrunner.gnm1.ann1.MM015B Arachis hypogaea HOM05D005532 ORTHO05D006873 2.9e-27 126.7 168 39.3
ClCG02G023050 Citrullus lanatus HOM05D005532 ORTHO05D006873 4.9e-27 125.9 370 27.6
ATR0721G047 Amborella trichopoda HOM05D005532 ORTHO05D006873 8.3e-27 125.2 230 35.2
Sc09g0000860 Simmondsia chinensis HOM05D005532 ORTHO05D006873 7.1e-26 122.1 247 33.6
Gohir.A07G122800 Gossypium hirsutum HOM05D005532 ORTHO05D006873 2.1e-25 120.6 244 32.4
SGA_v2.0_scaffold29G12269 Striga asiatica HOM05D005532 ORTHO05D006873 3.3e-23 113.2 268 32.1
CARHR040460 Cardamine hirsuta HOM05D005532 ORTHO05D006873 1.1e-18 98.2 272 29.8
SalBow6G6953 Salvia bowleyana HOM05D005532 ORTHO05D006873 9.2e-18 95.1 83 53.0
Sc09g0000870 Simmondsia chinensis HOM05D005532 ORTHO05D006873 1.2e-17 94.7 204 32.8
QL01p018283 Quercus lobata HOM05D005532 ORTHO05D006873 1.6e-17 94.4 202 32.2
CsaV3_6G039160 Cucumis sativus L. HOM05D005532 ORTHO05D006873 2.1e-17 94.0 125 38.4
CSS0040461 Camellia sinensis var. sinensis HOM05D005532 ORTHO05D006873 3.0e-16 90.1 123 39.0
MBI05_g22559_MAGBIO Magnolia biondii HOM05D005532 ORTHO05D006873 3.0e-16 90.1 191 33.0
arahy.Tifrunner.gnm1.ann1.C2XCQ2 Arachis hypogaea HOM05D005532 ORTHO05D006873 3.9e-16 89.7 86 51.2
SEGI_01123 Sequoiadendron giganteum HOM05D005532 ORTHO05D006873 1.5e-15 87.8 76 55.3
Migut.D00646 Erythranthe guttata HOM05D005532 ORTHO05D006873 1.2e-14 84.7 87 55.2
CsaV3_6G039150 Cucumis sativus L. HOM05D005532 ORTHO05D006873 6.2e-14 82.4 206 29.1
arahy.Tifrunner.gnm1.ann1.E0YEAW Arachis hypogaea HOM05D005532 ORTHO05D006873 4.0e-13 79.7 108 43.5
CBR_g3868 Chara braunii HOM05D000019 ORTHO05D000048 7.1e-10 68.9 94 40.4
Ciclev10017011m.g Citrus clementina HOM05D005532 ORTHO05D006873 2.7e-09 67.0 73 45.2
HanXRQChr09g0270661 Helianthus annuus HOM05D000715 ORTHO05D000024 2.7e-09 67.0 84 38.1
PRCOL_00002357 Prasinoderma coloniale HOM05D005532 ORTHO05D006873 8.1e-06 55.5 103 35.9


User provided reference genes

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