Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PRCOL_00003313 Prasinoderma coloniale HOM05D005160 ORTHO05D006127 2.0e-298 1028.5 564 100.0
MCO08G169 Micromonas commoda HOM05D005160 ORTHO05D006127 2.9e-52 210.7 380 34.5
Cre09.g390467 Chlamydomonas reinhardtii HOM05D005160 ORTHO05D006127 3.8e-52 210.3 577 31.4
MCO01G409 Micromonas commoda HOM05D005160 ORTHO05D006127 1.8e-46 191.4 358 35.5
CBR_g32587 Chara braunii HOM05D005160 ORTHO05D006127 1.2e-34 152.1 470 28.5
Cre14.g617800 Chlamydomonas reinhardtii HOM05D005160 ORTHO05D006127 7.1e-30 136.3 460 27.8
TAR381G1224 Trochodendron aralioides HOM05D005160 ORTHO05D006127 3.5e-29 134.0 526 25.5
EL10Ac9g21400 Beta vulgaris HOM05D005160 ORTHO05D006127 1.3e-28 132.1 509 25.1
Aqoxy5G01804 Aquilegia oxysepala HOM05D005160 ORTHO05D006127 1.5e-27 128.6 520 23.1
SMO012G0038 Selaginella moellendorffii HOM05D005160 ORTHO05D006127 1.9e-27 128.3 527 22.6
Pp3c15_6240 Physcomitrium patens HOM05D005160 ORTHO05D006127 5.6e-27 126.7 530 22.3
Hma1.2p1_0163F.1_g072320 Hydrangea macrophylla HOM05D005160 ORTHO05D006127 7.3e-27 126.3 517 23.2
Ciclev10028126m.g Citrus clementina HOM05D005160 ORTHO05D006127 1.2e-26 125.6 510 24.3
Nn5g30735 Nelumbo nucifera HOM05D005160 ORTHO05D006127 1.6e-26 125.2 513 23.2
FvH4_2g01450 Fragaria vesca HOM05D005160 ORTHO05D006127 2.1e-26 124.8 523 26.6
FAN24G2272 Fragaria x ananassa HOM05D005160 ORTHO05D006127 2.1e-26 124.8 523 26.6
MD10G1123200 Malus domestica HOM05D005160 ORTHO05D006127 2.1e-26 124.8 515 25.8
FAN20G0465 Fragaria x ananassa HOM05D005160 ORTHO05D006127 2.8e-26 124.4 517 25.9
FAN27G2227 Fragaria x ananassa HOM05D005160 ORTHO05D006127 2.8e-26 124.4 521 26.7
Potri.004G173600 Populus trichocarpa HOM05D005160 ORTHO05D006127 3.6e-26 124.0 512 25.0
Sp7g37140 Schrenkiella parvula HOM05D005160 ORTHO05D006127 4.7e-26 123.6 516 24.4
PGSC0003DMG402006199 Solanum tuberosum HOM05D005160 ORTHO05D006127 4.7e-26 123.6 509 24.2
Thecc.02G062800 Theobroma cacao HOM05D005160 ORTHO05D006127 8.1e-26 122.9 517 25.5
Hund06424 Selenicereus undatus HOM05D005160 ORTHO05D006127 1.1e-25 122.5 509 24.6
Sabra04G0115600 Salix brachista HOM05D005160 ORTHO05D006127 1.4e-25 122.1 512 24.6
AUR62010059 Chenopodium quinoa HOM05D005160 ORTHO05D006127 1.8e-25 121.7 515 24.7
PSO170G2472 Papaver somniferum HOM05D005160 ORTHO05D006127 1.8e-25 121.7 522 23.9
Lsat_1_v5_gn_3_46280 Lactuca sativa HOM05D005160 ORTHO05D006127 2.3e-25 121.3 511 23.5
Mapoly0029s0105 Marchantia polymorpha HOM05D005160 ORTHO05D006127 2.3e-25 121.3 529 24.8
Cre06.g278550 Chlamydomonas reinhardtii HOM05D005160 ORTHO05D006127 3.1e-25 120.9 460 29.1
FAN15G3563 Fragaria x ananassa HOM05D005160 ORTHO05D006127 6.8e-25 119.8 521 26.1
Nitab4.5_0005837g0020 Nicotiana tabacum HOM05D005160 ORTHO05D006127 8.9e-25 119.4 520 24.2
Cc02_g16320 Coffea canephora HOM05D005160 ORTHO05D006127 1.2e-24 119.0 518 24.3
Potri.009G132900 Populus trichocarpa HOM05D005160 ORTHO05D006127 1.2e-24 119.0 518 23.9
Thecc.02G062500 Theobroma cacao HOM05D005160 ORTHO05D006127 1.2e-24 119.0 517 25.0
AUR62013051 Chenopodium quinoa HOM05D005160 ORTHO05D006127 1.5e-24 118.6 515 24.7
Nitab4.5_0001891g0030 Nicotiana tabacum HOM05D005160 ORTHO05D006127 1.5e-24 118.6 520 24.0
Gohir.A01G166700 Gossypium hirsutum HOM05D005160 ORTHO05D006127 2.0e-24 118.2 525 23.8
RcHm_v2.0_Chr6g0244091 Rosa chinensis HOM05D005160 ORTHO05D006127 2.0e-24 118.2 520 24.4
Sopen01g053440 Solanum pennellii HOM05D005160 ORTHO05D006127 2.6e-24 117.9 509 23.6
Thhalv10024826m.g Eutrema salsugineum HOM05D005160 ORTHO05D006127 3.4e-24 117.5 514 23.3
PSO700G0063 Papaver somniferum HOM05D005160 ORTHO05D006127 3.4e-24 117.5 524 23.5
Solyc01g111370.3 Solanum lycopersicum HOM05D005160 ORTHO05D006127 7.6e-24 116.3 509 23.6
CAN.G588.54 Capsicum annuum HOM05D005160 ORTHO05D006127 9.9e-24 115.9 511 23.5
Peaxi162Scf00362g00839 Petunia axillaris HOM05D005160 ORTHO05D006127 1.7e-23 115.2 513 23.0
THA.LOC104804092 Tarenaya hassleriana HOM05D005160 ORTHO05D006127 1.7e-23 115.2 515 23.5
Prupe.8G163700 Prunus persica HOM05D005160 ORTHO05D006127 2.2e-23 114.8 515 24.9
CiPaw.05G080400 Carya illinoinensis HOM05D005160 ORTHO05D006127 3.7e-23 114.0 509 23.6
SalBow1G7891 Salvia bowleyana HOM05D005160 ORTHO05D006127 3.7e-23 114.0 545 24.2
BcaB03g12216 Brassica carinata HOM05D005160 ORTHO05D006127 4.9e-23 113.6 532 24.4
SEGI_02117 Sequoiadendron giganteum HOM05D005160 ORTHO05D006127 8.3e-23 112.8 353 26.1
C03p77200 Brassica napus HOM05D005160 ORTHO05D006127 1.4e-22 112.1 515 24.1
BcaC01g00246 Brassica carinata HOM05D005160 ORTHO05D006127 2.4e-22 111.3 514 23.9
Haze_02160 Corylus avellana HOM05D005160 ORTHO05D006127 2.4e-22 111.3 519 23.3
BolC3t19975H Brassica oleracea HOM05D005160 ORTHO05D006127 3.2e-22 110.9 515 24.3
Aa31LG6G16530 Aethionema arabicum HOM05D005160 ORTHO05D006127 4.1e-22 110.5 519 23.1
MBI09_g14140_MAGBIO Magnolia biondii HOM05D005160 ORTHO05D006127 4.1e-22 110.5 511 23.7
Sc08g0003030 Simmondsia chinensis HOM05D005160 ORTHO05D006127 4.1e-22 110.5 356 26.4
A08p24110 Brassica napus HOM05D005160 ORTHO05D006127 5.4e-22 110.2 514 23.7
MD05G1119500 Malus domestica HOM05D005160 ORTHO05D006127 7.1e-22 109.8 511 24.5
THA.LOC104824770 Tarenaya hassleriana HOM05D005160 ORTHO05D006127 7.1e-22 109.8 562 23.7
CARHR294360 Cardamine hirsuta HOM05D005160 ORTHO05D006127 9.2e-22 109.4 520 23.5
Eucgr.I01400 Eucalyptus grandis HOM05D005160 ORTHO05D006127 9.2e-22 109.4 419 27.0
TWI31G1222 Tripterygium wilfordii HOM05D005160 ORTHO05D006127 1.6e-21 108.6 547 24.5
Gohir.D01G157700 Gossypium hirsutum HOM05D005160 ORTHO05D006127 2.1e-21 108.2 569 23.9
CSS0048155 Camellia sinensis var. sinensis HOM05D005160 ORTHO05D006127 2.7e-21 107.8 513 22.0
Duzib052G1050 Durio zibethinus HOM05D005160 ORTHO05D006127 2.7e-21 107.8 510 23.3
Carub.0007s0051 Capsella rubella HOM05D005160 ORTHO05D006127 3.5e-21 107.5 515 23.1
Duzib132G0556 Durio zibethinus HOM05D005160 ORTHO05D006127 3.5e-21 107.5 522 23.6
Gorai.002G195800 Gossypium raimondii HOM05D005160 ORTHO05D006127 3.5e-21 107.5 569 23.7
ClCG02G011810 Citrullus lanatus HOM05D005160 ORTHO05D006127 4.6e-21 107.1 518 22.8
Manes.04G073300 Manihot esculenta HOM05D005160 ORTHO05D006127 6.0e-21 106.7 519 23.3
CDE02G2386 Ceratophyllum demersum HOM05D005160 ORTHO05D006127 7.8e-21 106.3 253 28.1
Cfa005223 Carpinus fangiana HOM05D005160 ORTHO05D006127 2.3e-20 104.8 509 23.2
DCAR_003159 Daucus carota HOM05D005160 ORTHO05D006127 2.3e-20 104.8 508 22.8
HanXRQChr17g0543921 Helianthus annuus HOM05D005160 ORTHO05D006127 3.0e-20 104.4 516 23.6
GSVIVG01024045001 Vitis vinifera HOM05D005160 ORTHO05D006127 3.0e-20 104.4 518 23.0
CiPaw.06G123200 Carya illinoinensis HOM05D005160 ORTHO05D006127 3.9e-20 104.0 507 24.9
Dinv41951 Davidia involucrata HOM05D005160 ORTHO05D006127 6.6e-20 103.2 503 23.1
AL7G10530 Arabidopsis lyrata HOM05D005160 ORTHO05D006127 1.1e-19 102.4 512 22.5
Phvul.011G034500 Phaseolus vulgaris HOM05D005160 ORTHO05D006127 1.1e-19 102.4 508 21.5
Rhsim11G0191300 Rhododendron simsii HOM05D005160 ORTHO05D006127 1.1e-19 102.4 510 23.1
Atru.chr5.3293 Acer truncatum HOM05D005160 ORTHO05D006127 1.5e-19 102.1 363 24.8
CDE04G1868 Ceratophyllum demersum HOM05D005160 ORTHO05D006127 1.5e-19 102.1 253 27.3
COL.COLO4_17310 Corchorus olitorius HOM05D005160 ORTHO05D006127 1.9e-19 101.7 365 25.2
Migut.B00095 Erythranthe guttata HOM05D005160 ORTHO05D006127 1.9e-19 101.7 575 22.4
VMungo1127G1693 Vigna mungo HOM05D005160 ORTHO05D006127 2.5e-19 101.3 511 21.1
AT4G38640 Arabidopsis thaliana HOM05D005160 ORTHO05D006127 3.3e-19 100.9 516 22.7
Sed0006607 Sechium edule HOM05D005160 ORTHO05D006127 3.3e-19 100.9 518 22.6
Actinidia20505 Actinidia chinensis HOM05D005160 ORTHO05D006127 4.3e-19 100.5 509 22.4
Lj3g0012456 Lotus japonicus HOM05D005160 ORTHO05D006127 5.6e-19 100.1 531 21.5
AagrBONN_evm.TU.Sc2ySwM_344.1211 Anthoceros agrestis HOM05D005160 ORTHO05D006127 1.2e-18 99.0 561 21.6
MSTRG.16896 Avicennia marina HOM05D005160 ORTHO05D006127 1.2e-18 99.0 539 21.5
Glyma.12G031600 Glycine max HOM05D005160 ORTHO05D006127 1.2e-18 99.0 516 22.3
Sabra09G0103200 Salix brachista HOM05D005160 ORTHO05D006127 1.2e-18 99.0 525 22.7
vmacro02269 Vaccinium macrocarpon HOM05D005160 ORTHO05D006127 1.2e-18 99.0 542 21.2
Lalb_Chr03g0025091 Lupinus albus HOM05D005160 ORTHO05D006127 2.8e-18 97.8 511 22.1
MELO3C020808.2 Cucumis melo HOM05D005160 ORTHO05D006127 3.6e-18 97.4 561 22.8
TWI75G0220 Tripterygium wilfordii HOM05D005160 ORTHO05D006127 4.7e-18 97.1 510 22.4
Glyma.11G106500 Glycine max HOM05D005160 ORTHO05D006127 6.2e-18 96.7 510 21.6
ECA246G0167 Erigeron canadensis HOM05D005160 ORTHO05D006127 1.1e-17 95.9 255 25.1
Ah.01g022840 Amaranthus hybridus HOM05D005160 ORTHO05D006127 1.4e-17 95.5 509 23.0
CsaV3_2G015970 Cucumis sativus L. HOM05D005160 ORTHO05D006127 1.8e-17 95.1 562 22.4
ATR0579G151 Amborella trichopoda HOM05D005160 ORTHO05D006127 2.4e-17 94.7 562 21.4
Oeu014453.1 Olea europaea HOM05D005160 ORTHO05D006127 2.4e-17 94.7 431 23.0
SGA_v2.0_scaffold32G13272 Striga asiatica HOM05D005160 ORTHO05D006127 4.0e-17 94.0 527 22.4
QL11p049938 Quercus lobata HOM05D005160 ORTHO05D006127 1.2e-16 92.4 541 22.6
SGA_v2.0_scaffold58G20392 Striga asiatica HOM05D005160 ORTHO05D006127 3.4e-16 90.9 530 21.9
Medtr4g073620 Medicago truncatula HOM05D005160 ORTHO05D006127 2.2e-15 88.2 525 21.5
Ca_19053_v3 Cicer arietinum L. HOM05D005160 ORTHO05D006127 2.9e-15 87.8 513 22.0
Pp3c24_1990 Physcomitrium patens HOM05D005160 ORTHO05D006127 6.4e-15 86.7 571 23.1
AagrBONN_evm.TU.Sc2ySwM_228.1713 Anthoceros agrestis HOM05D022446 ORTHO05D006127 3.2e-14 84.3 392 25.0
Psat7g175760 Pisum sativum HOM05D005160 ORTHO05D006127 2.1e-13 81.6 525 21.7
unitig_0.g42 Utricularia gibba HOM05D005160 ORTHO05D000138 1.3e-12 79.0 449 22.0
Manes.11G095300 Manihot esculenta HOM05D005160 ORTHO05D006127 6.6e-12 76.6 398 23.4
TPR.G39261 Trifolium pratense HOM05D005160 ORTHO05D006127 6.6e-12 76.6 441 22.4
Lj5A181T55 Lonicera japonica HOM05D005160 ORTHO05D006127 2.1e-10 71.6 359 23.1
Actinidia00615 Actinidia chinensis HOM05D005160 ORTHO05D006127 3.6e-10 70.9 328 22.9
Lalb_Chr01g0001791 Lupinus albus HOM05D005160 ORTHO05D006127 4.8e-10 70.5 254 22.4
Lj9A392T37 Lonicera japonica HOM05D005160 ORTHO05D006127 2.2e-07 61.6 135 29.6
Oeu006646.1 Olea europaea HOM05D005160 ORTHO05D006127 6.4e-07 60.1 195 26.2
Manes.05G150701 Manihot esculenta HOM05D005160 ORTHO05D006127 7.1e-06 56.6 318 23.3


User provided reference genes

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