Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PRCOL_00002802 Prasinoderma coloniale HOM05D003542 ORTHO05D004799 0.0e+00 2766.1 1382 100.0
Mapoly0019s0126 Marchantia polymorpha HOM05D003542 ORTHO05D004799 1.5e-44 186.4 572 27.4
MSTRG.25746 Avicennia marina HOM05D003542 ORTHO05D004799 8.8e-42 177.2 474 29.5
PRCOL_00003662 Prasinoderma coloniale HOM05D003542 ORTHO05D004799 1.5e-41 176.4 573 27.4
PRCOL_00003997 Prasinoderma coloniale HOM05D003542 ORTHO05D004799 2.0e-41 176.0 662 25.5
BcaC02g07760 Brassica carinata HOM05D003542 ORTHO05D004799 3.4e-41 175.3 475 29.1
C04p64420 Brassica napus HOM05D003542 ORTHO05D004799 3.4e-41 175.3 475 29.1
BolC4t27926H Brassica oleracea HOM05D003542 ORTHO05D004799 3.4e-41 175.3 475 29.1
Ciclev10011269m.g Citrus clementina HOM05D003542 ORTHO05D004799 4.4e-41 174.9 474 27.2
A04p27010 Brassica napus HOM05D003542 ORTHO05D004799 5.7e-41 174.5 475 29.1
BraA04t18202Z Brassica rapa HOM05D003542 ORTHO05D004799 5.7e-41 174.5 475 29.1
HanXRQChr17g0537321 Helianthus annuus HOM05D003542 ORTHO05D004799 5.7e-41 174.5 574 25.3
BcaB02g09412 Brassica carinata HOM05D003542 ORTHO05D004799 7.5e-41 174.1 475 29.3
BcaC02g11677 Brassica carinata HOM05D003542 ORTHO05D004799 7.5e-41 174.1 475 29.3
MCO09G799 Micromonas commoda HOM05D003542 ORTHO05D004799 9.8e-41 173.7 505 27.5
EL10Ac5g12587 Beta vulgaris HOM05D003542 ORTHO05D004799 1.7e-40 172.9 472 28.0
A05p10120 Brassica napus HOM05D003542 ORTHO05D004799 1.7e-40 172.9 475 29.3
BraA05t19953Z Brassica rapa HOM05D003542 ORTHO05D004799 1.7e-40 172.9 475 29.3
FAN13G1207 Fragaria x ananassa HOM05D003542 ORTHO05D004799 1.7e-40 172.9 475 29.5
C04p12510 Brassica napus HOM05D003542 ORTHO05D004799 4.8e-40 171.4 475 28.8
BolC4t22898H Brassica oleracea HOM05D003542 ORTHO05D004799 4.8e-40 171.4 475 28.8
FAN18G2203 Fragaria x ananassa HOM05D003542 ORTHO05D004799 4.8e-40 171.4 475 29.3
CSS0026658 Camellia sinensis var. sinensis HOM05D003542 ORTHO05D004799 6.3e-40 171.0 430 28.8
CARHR129800 Cardamine hirsuta HOM05D003542 ORTHO05D004799 6.3e-40 171.0 475 28.8
AUR62030410 Chenopodium quinoa HOM05D003542 ORTHO05D004799 8.3e-40 170.6 472 27.8
Thhalv10016368m.g Eutrema salsugineum HOM05D003542 ORTHO05D004799 8.3e-40 170.6 475 29.1
RcHm_v2.0_Chr7g0215361 Rosa chinensis HOM05D003542 ORTHO05D004799 1.1e-39 170.2 476 29.2
AUR62010484 Chenopodium quinoa HOM05D003542 ORTHO05D004799 1.4e-39 169.9 472 27.8
Carub.0004s1730 Capsella rubella HOM05D003542 ORTHO05D004799 1.8e-39 169.5 475 28.6
FvH4_5g25240 Fragaria vesca HOM05D003542 ORTHO05D004799 2.4e-39 169.1 475 29.1
Atru.chr8.2622 Acer truncatum HOM05D003542 ORTHO05D004799 5.4e-39 167.9 473 27.7
Pp3c12_18450 Physcomitrium patens HOM05D003542 ORTHO05D004799 5.4e-39 167.9 543 25.6
Lsat_1_v5_gn_3_20301 Lactuca sativa HOM05D003542 ORTHO05D004799 7.0e-39 167.5 475 28.0
Lj8C8T8 Lonicera japonica HOM05D003542 ORTHO05D004799 7.0e-39 167.5 431 28.3
Zm00001eb049170 Zea mays HOM05D003542 ORTHO05D004799 7.0e-39 167.5 431 28.3
Aa31LG9G15750 Aethionema arabicum HOM05D003542 ORTHO05D004799 9.1e-39 167.2 480 27.7
arahy.Tifrunner.gnm1.ann1.GAUN3U Arachis hypogaea HOM05D003542 ORTHO05D004799 1.6e-38 166.4 485 27.0
arahy.Tifrunner.gnm1.ann1.JPC2KC Arachis hypogaea HOM05D003542 ORTHO05D004799 1.6e-38 166.4 485 27.0
Actinidia01250 Actinidia chinensis HOM05D003542 ORTHO05D004799 2.0e-38 166.0 473 28.1
Cc04_g11570 Coffea canephora HOM05D003542 ORTHO05D004799 3.5e-38 165.2 429 27.3
Phvul.002G122000 Phaseolus vulgaris HOM05D003542 ORTHO05D004799 3.5e-38 165.2 474 27.8
Manes.15G191800 Manihot esculenta HOM05D003542 ORTHO05D004799 4.5e-38 164.9 473 27.3
Rhsim11G0037300 Rhododendron simsii HOM05D003542 ORTHO05D004799 5.9e-38 164.5 433 29.3
SGA_v2.0_scaffold96G29103 Striga asiatica HOM05D003542 ORTHO05D004799 1.3e-37 163.3 473 27.9
SMO329G0009 Selaginella moellendorffii HOM05D003542 ORTHO05D004799 1.7e-37 162.9 543 26.0
Aa31LG2G14340 Aethionema arabicum HOM05D003542 ORTHO05D004799 5.0e-37 161.4 473 27.5
Cc04_g11580 Coffea canephora HOM05D003542 ORTHO05D004799 8.6e-37 160.6 474 25.9
Ah.12g058430 Amaranthus hybridus HOM05D003542 ORTHO05D004799 7.2e-36 157.5 491 26.7
Cre13.g568200 Chlamydomonas reinhardtii HOM05D003542 ORTHO05D004799 9.5e-36 157.1 490 26.9
MCO06G136 Micromonas commoda HOM05D003542 ORTHO05D004799 9.5e-36 157.1 428 28.0
PSO675G5456 Papaver somniferum HOM05D003542 ORTHO05D004799 1.2e-35 156.8 484 27.5
Cc08_g05880 Coffea canephora HOM05D003542 ORTHO05D004799 1.6e-35 156.4 448 28.1
Hund14306 Selenicereus undatus HOM05D003542 ORTHO05D004799 2.1e-35 156.0 441 27.9
arahy.Tifrunner.gnm1.ann1.B24I2L Arachis hypogaea HOM05D003542 ORTHO05D004799 2.8e-35 155.6 500 26.2
Lalb_Chr16g0391801 Lupinus albus HOM05D003542 ORTHO05D004799 4.7e-35 154.8 475 26.9
PSO502G0023 Papaver somniferum HOM05D003542 ORTHO05D004799 6.1e-35 154.5 541 27.0
Migut.A00523 Erythranthe guttata HOM05D003542 ORTHO05D004799 8.0e-35 154.1 483 26.9
MCO03G075 Micromonas commoda HOM05D003542 ORTHO05D049253 2.3e-34 152.5 557 27.3
ATR0568G062 Amborella trichopoda HOM05D003542 ORTHO05D004799 3.0e-34 152.1 442 27.8
Sed0027808 Sechium edule HOM05D003542 ORTHO05D004799 5.2e-34 151.4 499 26.3
vmacro00095 Vaccinium macrocarpon HOM05D003542 ORTHO05D004799 5.2e-34 151.4 487 26.3
Cre07.g332500 Chlamydomonas reinhardtii HOM05D003542 ORTHO05D004799 6.8e-34 151.0 434 27.0
CsaV3_4G027890 Cucumis sativus L. HOM05D003542 ORTHO05D004799 6.8e-34 151.0 522 25.5
FAN08G1408 Fragaria x ananassa HOM05D003542 ORTHO05D004799 6.8e-34 151.0 506 26.7
MCO04G331 Micromonas commoda HOM05D003542 ORTHO05D004799 8.9e-34 150.6 443 26.9
Cc08_g05890 Coffea canephora HOM05D003542 ORTHO05D004799 2.6e-33 149.1 439 28.0
AagrBONN_evm.TU.Sc2ySwM_344.2406 Anthoceros agrestis HOM05D003542 ORTHO05D004799 4.4e-33 148.3 428 27.6
Ca_25048_v3 Cicer arietinum L. HOM05D003542 ORTHO05D004799 4.4e-33 148.3 444 26.4
HanXRQChr06g0173181 Helianthus annuus HOM05D003542 ORTHO05D004799 4.4e-33 148.3 515 26.2
Sed0024265 Sechium edule HOM05D003542 ORTHO05D004799 4.4e-33 148.3 468 26.7
CDE01G0249 Ceratophyllum demersum HOM05D003542 ORTHO05D004799 7.5e-33 147.5 439 26.9
Manes.17G001100 Manihot esculenta HOM05D003542 ORTHO05D004799 9.8e-33 147.1 468 25.9
Medtr5g025590 Medicago truncatula HOM05D003542 ORTHO05D004799 9.8e-33 147.1 446 26.0
Solyc08g075340.3 Solanum lycopersicum HOM05D003542 ORTHO05D004799 9.8e-33 147.1 443 27.8
TWI60G1302 Tripterygium wilfordii HOM05D003542 ORTHO05D004799 9.8e-33 147.1 468 26.7
Nn3g19110 Nelumbo nucifera HOM05D003542 ORTHO05D004799 1.3e-32 146.7 478 26.4
CiPaw.12G055200 Carya illinoinensis HOM05D003542 ORTHO05D004799 1.7e-32 146.4 495 26.3
ECA246G1310 Erigeron canadensis HOM05D003542 ORTHO05D004799 1.7e-32 146.4 452 26.8
SEGI_27818 Sequoiadendron giganteum HOM05D003542 ORTHO05D004799 1.7e-32 146.4 443 26.9
Sopen08g023950 Solanum pennellii HOM05D003542 ORTHO05D004799 2.2e-32 146.0 443 27.5
TAR375G0128 Trochodendron aralioides HOM05D003542 ORTHO05D004799 2.2e-32 146.0 482 25.7
PRCOL_00007053 Prasinoderma coloniale HOM05D003542 ORTHO05D004799 2.8e-32 145.6 531 26.9
ClCG11G016080 Citrullus lanatus HOM05D003542 ORTHO05D004799 4.9e-32 144.8 485 25.6
DCAR_004534 Daucus carota HOM05D003542 ORTHO05D004799 4.9e-32 144.8 481 26.0
MD06G1008500 Malus domestica HOM05D003542 ORTHO05D004799 4.9e-32 144.8 443 26.2
THA.LOC104798529 Tarenaya hassleriana HOM05D003542 ORTHO05D004799 6.3e-32 144.4 447 26.4
Nitab4.5_0002603g0020 Nicotiana tabacum HOM05D003542 ORTHO05D004799 8.3e-32 144.1 443 27.3
Lalb_Chr05g0215151 Lupinus albus HOM05D003542 ORTHO05D004799 1.1e-31 143.7 444 26.1
MBI15_g33455_MAGBIO Magnolia biondii HOM05D003542 ORTHO05D004799 1.1e-31 143.7 508 26.0
Cfa012300 Carpinus fangiana HOM05D003542 ORTHO05D004799 1.4e-31 143.3 519 26.0
Eucgr.E01147 Eucalyptus grandis HOM05D003542 ORTHO05D004799 1.4e-31 143.3 443 26.6
Nitab4.5_0006371g0020 Nicotiana tabacum HOM05D003542 ORTHO05D004799 1.4e-31 143.3 443 27.3
Potri.004G235800 Populus trichocarpa HOM05D003542 ORTHO05D004799 1.4e-31 143.3 468 25.4
Sc07g0007990 Simmondsia chinensis HOM05D003542 ORTHO05D004799 1.4e-31 143.3 443 26.9
TAR374G1176 Trochodendron aralioides HOM05D003542 ORTHO05D004799 1.4e-31 143.3 412 26.7
Gohir.D08G170000 Gossypium hirsutum HOM05D003542 ORTHO05D004799 1.8e-31 142.9 467 26.3
GSVIVG01036881001 Vitis vinifera HOM05D003542 ORTHO05D004799 1.8e-31 142.9 443 26.6
Glyma.01G153600 Glycine max HOM05D003542 ORTHO05D004799 2.4e-31 142.5 449 25.8
Hma1.2p1_0839F.1_g226340 Hydrangea macrophylla HOM05D003542 ORTHO05D004799 2.4e-31 142.5 482 25.7
Peaxi162Scf00053g00006 Petunia axillaris HOM05D003542 ORTHO05D004799 2.4e-31 142.5 443 27.1
PGR042G1333 Punica granatum HOM05D003542 ORTHO05D004799 2.4e-31 142.5 482 26.1
VMungo0251G1439 Vigna mungo HOM05D003542 ORTHO05D004799 2.4e-31 142.5 502 25.7
Gorai.004G177500 Gossypium raimondii HOM05D003542 ORTHO05D004799 3.1e-31 142.1 467 26.3
Sabra01G0180200 Salix brachista HOM05D003542 ORTHO05D004799 3.1e-31 142.1 443 26.4
CAN.G998.13 Capsicum annuum HOM05D003542 ORTHO05D004799 4.1e-31 141.7 443 27.1
CBR_g30748 Chara braunii HOM05D003542 ORTHO05D004799 4.1e-31 141.7 479 25.9
Duzib205G1391 Durio zibethinus HOM05D003542 ORTHO05D004799 4.1e-31 141.7 480 26.0
Psat4g107640 Pisum sativum HOM05D003542 ORTHO05D004799 4.1e-31 141.7 443 26.4
Sed0016507 Sechium edule HOM05D003542 ORTHO05D004799 4.1e-31 141.7 502 24.5
VMungo1215G0924 Vigna mungo HOM05D003542 ORTHO05D004799 4.1e-31 141.7 492 26.0
Haze_08429 Corylus avellana HOM05D003542 ORTHO05D004799 5.4e-31 141.4 482 26.1
HPP92_014853 Vanilla planifolia HOM05D003542 ORTHO05D004799 5.4e-31 141.4 445 26.5
BcaB06g28850 Brassica carinata HOM05D003542 ORTHO05D004799 7.0e-31 141.0 441 26.1
Gohir.A12G201400 Gossypium hirsutum HOM05D003542 ORTHO05D004799 7.0e-31 141.0 467 25.9
Lalb_Chr05g0229201 Lupinus albus HOM05D003542 ORTHO05D004799 7.0e-31 141.0 444 26.1
Phvul.003G278500 Phaseolus vulgaris HOM05D003542 ORTHO05D004799 7.0e-31 141.0 444 25.9
Psat2g145280 Pisum sativum HOM05D003542 ORTHO05D004799 7.0e-31 141.0 441 25.6
QL12p003762 Quercus lobata HOM05D003542 ORTHO05D004799 7.0e-31 141.0 486 25.5
CANSAT80G0877 Cannabis sativa HOM05D003542 ORTHO05D004799 9.2e-31 140.6 443 26.4
Lj2g0004183 Lotus japonicus HOM05D003542 ORTHO05D004799 9.2e-31 140.6 480 25.6
Thecc.03G319900 Theobroma cacao HOM05D003542 ORTHO05D004799 9.2e-31 140.6 443 25.7
AT2G35610 Arabidopsis thaliana HOM05D003542 ORTHO05D004799 1.2e-30 140.2 443 26.2
Glyma.11G091000 Glycine max HOM05D003542 ORTHO05D004799 1.2e-30 140.2 492 24.8
Gohir.D12G204200 Gossypium hirsutum HOM05D003542 ORTHO05D004799 1.2e-30 140.2 467 25.9
Gorai.008G219000 Gossypium raimondii HOM05D003542 ORTHO05D004799 1.2e-30 140.2 467 25.9
Sp4g17820 Schrenkiella parvula HOM05D003542 ORTHO05D004799 1.2e-30 140.2 443 26.4
Oeu036053.1 Olea europaea HOM05D003542 ORTHO05D004799 2.7e-30 139.0 486 25.3
SHI32767 Sapria himalayana HOM05D003542 ORTHO05D004799 2.7e-30 139.0 452 25.7
Ca_22456_v3 Cicer arietinum L. HOM05D003542 ORTHO05D004799 4.5e-30 138.3 444 25.9
Aqoxy5G03565 Aquilegia oxysepala HOM05D003542 ORTHO05D004799 5.9e-30 137.9 482 25.3
CiPaw.11G074400 Carya illinoinensis HOM05D003542 ORTHO05D004799 7.8e-30 137.5 440 25.9
Gohir.A08G149000 Gossypium hirsutum HOM05D003542 ORTHO05D004799 1.0e-29 137.1 519 25.2
SalBow4G0461 Salvia bowleyana HOM05D003542 ORTHO05D004799 1.0e-29 137.1 528 26.1
TPR.G14272 Trifolium pratense HOM05D003542 ORTHO05D004799 1.0e-29 137.1 443 26.2
Glyma.16G109700 Glycine max HOM05D003542 ORTHO05D004799 1.3e-29 136.7 527 24.7
Lj4g0008068 Lotus japonicus HOM05D003542 ORTHO05D004799 6.6e-29 134.4 483 24.6
THA.LOC104814389 Tarenaya hassleriana HOM05D003542 ORTHO05D004799 6.6e-29 134.4 497 25.2
Cc04_g11590 Coffea canephora HOM05D003542 ORTHO05D004799 8.6e-29 134.0 434 27.4
Cre14.g629000 Chlamydomonas reinhardtii HOM05D003542 ORTHO05D004799 1.1e-28 133.7 429 26.8
Glyma.16G076700 Glycine max HOM05D003542 ORTHO05D004799 1.9e-28 132.9 531 24.3
PRCOL_00004785 Prasinoderma coloniale HOM05D003542 ORTHO05D049253 1.9e-28 132.9 492 24.8
AL4G31650 Arabidopsis lyrata HOM05D003542 ORTHO05D004799 9.5e-28 130.6 443 25.3
Medtr8g072310 Medicago truncatula HOM05D003542 ORTHO05D004799 9.5e-28 130.6 443 26.2
arahy.Tifrunner.gnm1.ann1.2M3042 Arachis hypogaea HOM05D003542 ORTHO05D004799 1.2e-27 130.2 443 25.5
Prupe.5G011600 Prunus persica HOM05D003542 ORTHO05D004799 1.2e-27 130.2 517 24.6
MCO14G411 Micromonas commoda HOM05D003542 ORTHO05D049034 4.7e-27 128.3 678 26.8
MELO3C010524.2 Cucumis melo HOM05D003542 ORTHO05D004799 6.1e-27 127.9 532 24.2
TPR.G8991 Trifolium pratense HOM05D003542 ORTHO05D004799 6.1e-27 127.9 447 25.5
MCO13G070 Micromonas commoda HOM05D003542 ORTHO05D004799 9.8e-25 120.6 526 24.9
PRCOL_00005418 Prasinoderma coloniale HOM05D003542 ORTHO05D004799 3.7e-24 118.6 457 26.5
HanXRQChr17g0537351 Helianthus annuus HOM05D003542 ORTHO05D004799 5.4e-23 114.8 326 25.5
Oeu033614.1 Olea europaea HOM05D003542 ORTHO05D004799 7.0e-23 114.4 349 27.2
Cre07.g340950 Chlamydomonas reinhardtii HOM05D003542 ORTHO05D004799 3.9e-21 108.6 575 23.7
BcaC02g11676 Brassica carinata HOM05D003542 ORTHO05D004799 5.0e-21 108.2 260 30.4
COL.COLO4_16751 Corchorus olitorius HOM05D003542 ORTHO05D004799 1.5e-20 106.7 392 24.0
BcaC02g11616 Brassica carinata HOM05D003542 ORTHO05D004799 8.0e-19 100.9 260 29.6
C04p13130 Brassica napus HOM05D003542 ORTHO05D004799 8.0e-19 100.9 260 29.6
CBR_g56720 Chara braunii HOM05D003542 ORTHO05D015060 1.8e-18 99.8 581 23.2
CBR_g50705 Chara braunii HOM05D003542 ORTHO05D004799 2.0e-17 96.3 336 25.9
Os03g0586300 Oryza sativa ssp. japonica HOM05D003542 ORTHO05D004799 2.9e-16 92.4 281 26.7
Cre01.g000400 Chlamydomonas reinhardtii HOM05D003542 ORTHO05D004799 2.1e-14 86.3 442 22.6
CBR_g41334 Chara braunii HOM05D003542 ORTHO05D004799 1.7e-13 83.2 279 25.1
CBR_g8752 Chara braunii HOM05D003542 ORTHO05D015060 1.5e-12 80.1 481 22.2
CBR_g11065 Chara braunii HOM05D003542 ORTHO05D004799 1.6e-11 76.6 286 24.1
PRCOL_00000763 Prasinoderma coloniale HOM05D003542 ORTHO05D049034 6.2e-11 74.7 339 26.0
Cre04.g217949 Chlamydomonas reinhardtii HOM05D003542 ORTHO05D004799 1.1e-10 73.9 410 22.7
CBR_g56721 Chara braunii HOM05D003542 ORTHO05D015060 2.3e-10 72.8 280 25.0
AagrBONN_evm.TU.Sc2ySwM_344.216 Anthoceros agrestis HOM05D003228 ORTHO05D003698 4.4e-09 68.6 311 22.2
CSS0037399 Camellia sinensis var. sinensis HOM05D003542 ORTHO05D004799 5.8e-09 68.2 141 29.8
Cpa.g.sc90.39 Carica papaya HOM05D003542 ORTHO05D004799 1.9e-07 63.2 119 28.6
CBR_g56719 Chara braunii HOM05D003542 ORTHO05D015060 4.1e-07 62.0 338 23.4
C03p38960 Brassica napus HOM05D003228 ORTHO05D003698 2.1e-06 59.7 315 23.2
BolC3t16168H Brassica oleracea HOM05D003228 ORTHO05D003698 4.6e-06 58.5 315 23.2
BcaC01g06852 Brassica carinata HOM05D003228 ORTHO05D003698 6.0e-06 58.2 315 22.9
BraA03t12366Z Brassica rapa HOM05D003228 ORTHO05D003698 6.0e-06 58.2 318 22.3
FAN18G0768 Fragaria x ananassa HOM05D003542 ORTHO05D004799 7.8e-06 57.8 123 30.9


User provided reference genes

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