Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PRCOL_00002744 Prasinoderma coloniale HOM05D004373 ORTHO05D005203 0.0e+00 1186.4 628 100.0
MD09G1156300 Malus domestica HOM05D004373 ORTHO05D005203 8.9e-66 255.8 243 52.3
Eucgr.D00004 Eucalyptus grandis HOM05D004373 ORTHO05D005203 1.2e-65 255.4 238 52.5
Prupe.3G169300 Prunus persica HOM05D004373 ORTHO05D005203 1.5e-65 255.0 245 51.8
EL10Ac9g21021 Beta vulgaris HOM05D004373 ORTHO05D005203 3.4e-65 253.8 242 51.7
Peaxi162Scf00154g00813 Petunia axillaris HOM05D004373 ORTHO05D005203 4.4e-65 253.4 237 53.2
AUR62041333 Chenopodium quinoa HOM05D004373 ORTHO05D005203 9.8e-65 252.3 242 52.1
arahy.Tifrunner.gnm1.ann1.JRDS1A Arachis hypogaea HOM05D004373 ORTHO05D005203 1.3e-64 251.9 240 52.1
Aqoxy1G01913 Aquilegia oxysepala HOM05D004373 ORTHO05D005203 1.7e-64 251.5 244 51.6
Os06g0152300 Oryza sativa ssp. japonica HOM05D004373 ORTHO05D005203 2.2e-64 251.1 244 50.0
Zm00001eb347960 Zea mays HOM05D004373 ORTHO05D005203 2.2e-64 251.1 240 52.1
Zm00001eb376720 Zea mays HOM05D004373 ORTHO05D005203 2.2e-64 251.1 243 51.4
Lsat_1_v5_gn_8_31981 Lactuca sativa HOM05D004373 ORTHO05D005203 2.9e-64 250.8 245 50.6
Medtr5g091910 Medicago truncatula HOM05D004373 ORTHO05D005203 2.9e-64 250.8 237 52.7
Potri.014G093100 Populus trichocarpa HOM05D004373 ORTHO05D005203 2.9e-64 250.8 239 51.9
Atru.chr6.3556 Acer truncatum HOM05D004373 ORTHO05D005203 3.7e-64 250.4 246 49.6
MD17G1142800 Malus domestica HOM05D004373 ORTHO05D005203 4.9e-64 250.0 235 52.3
Ah.01g016050 Amaranthus hybridus HOM05D004373 ORTHO05D005203 6.4e-64 249.6 262 49.2
arahy.Tifrunner.gnm1.ann1.GN05X3 Arachis hypogaea HOM05D004373 ORTHO05D005203 6.4e-64 249.6 240 52.1
CSS0005427 Camellia sinensis var. sinensis HOM05D004373 ORTHO05D005203 6.4e-64 249.6 244 51.2
CBR_g50290 Chara braunii HOM05D004373 ORTHO05D005203 6.4e-64 249.6 246 52.4
MBI06_g08521_MAGBIO Magnolia biondii HOM05D004373 ORTHO05D005203 6.4e-64 249.6 254 51.2
Phvul.008G264200 Phaseolus vulgaris HOM05D004373 ORTHO05D005203 6.4e-64 249.6 237 51.9
SalBow7G3596 Salvia bowleyana HOM05D004373 ORTHO05D005203 8.3e-64 249.2 245 50.6
unitig_747.g21614 Utricularia gibba HOM05D004373 ORTHO05D005203 8.3e-64 249.2 246 50.0
Actinidia11187 Actinidia chinensis HOM05D004373 ORTHO05D005203 1.1e-63 248.8 248 50.4
Psat2g014440 Pisum sativum HOM05D004373 ORTHO05D005203 1.4e-63 248.4 237 52.3
TPR.G12597 Trifolium pratense HOM05D004373 ORTHO05D005203 1.4e-63 248.4 237 51.9
AT2G30920 Arabidopsis thaliana HOM05D004373 ORTHO05D005203 1.9e-63 248.1 256 48.4
QL07p014019 Quercus lobata HOM05D004373 ORTHO05D005203 1.9e-63 248.1 237 51.5
PGR042G0892 Punica granatum HOM05D004373 ORTHO05D005203 2.4e-63 247.7 258 48.8
Haze_13471 Corylus avellana HOM05D004373 ORTHO05D005203 3.2e-63 247.3 245 50.2
ECA233G5691 Erigeron canadensis HOM05D004373 ORTHO05D005203 3.2e-63 247.3 246 50.4
Lj2g0023469 Lotus japonicus HOM05D004373 ORTHO05D005203 3.2e-63 247.3 248 50.8
VMungo0647G0741 Vigna mungo HOM05D004373 ORTHO05D005203 3.2e-63 247.3 237 51.1
Zm00001eb348020 Zea mays HOM05D004373 ORTHO05D005203 3.2e-63 247.3 243 51.0
BcaB06g28458 Brassica carinata HOM05D004373 ORTHO05D005203 4.1e-63 246.9 258 48.1
A04p23610 Brassica napus HOM05D004373 ORTHO05D005203 4.1e-63 246.9 258 47.7
COL.COLO4_33707 Corchorus olitorius HOM05D004373 ORTHO05D005203 4.1e-63 246.9 250 49.2
HPP92_000569 Vanilla planifolia HOM05D004373 ORTHO05D005203 4.1e-63 246.9 244 50.0
Ca_06293_v3 Cicer arietinum L. HOM05D004373 ORTHO05D005203 5.4e-63 246.5 237 51.1
RcHm_v2.0_Chr4g0446711 Rosa chinensis HOM05D004373 ORTHO05D005203 5.4e-63 246.5 245 50.2
Solyc07g055850.4 Solanum lycopersicum HOM05D004373 ORTHO05D005203 5.4e-63 246.5 237 51.9
Sopen07g029220 Solanum pennellii HOM05D004373 ORTHO05D005203 5.4e-63 246.5 237 51.9
CAN.G1481.10 Capsicum annuum HOM05D004373 ORTHO05D005203 7.0e-63 246.1 237 51.9
Glyma.14G026600 Glycine max HOM05D004373 ORTHO05D005203 7.0e-63 246.1 247 49.8
C04p60040 Brassica napus HOM05D004373 ORTHO05D005203 9.2e-63 245.7 255 49.0
Manes.12G048800 Manihot esculenta HOM05D004373 ORTHO05D005203 9.2e-63 245.7 237 51.5
CARHR124420 Cardamine hirsuta HOM05D004373 ORTHO05D005203 1.2e-62 245.4 251 49.0
HanXRQChr13g0386831 Helianthus annuus HOM05D004373 ORTHO05D005203 1.2e-62 245.4 245 50.6
RcHm_v2.0_Chr2g0150821 Rosa chinensis HOM05D004373 ORTHO05D005203 1.2e-62 245.4 242 50.0
Dinv12714 Davidia involucrata HOM05D004373 ORTHO05D005203 1.6e-62 245.0 247 49.4
FvH4_6g37760 Fragaria vesca HOM05D004373 ORTHO05D005203 1.6e-62 245.0 242 50.0
ATR0213G014 Amborella trichopoda HOM05D004373 ORTHO05D005203 2.0e-62 244.6 263 47.9
AL4G25860 Arabidopsis lyrata HOM05D004373 ORTHO05D005203 2.0e-62 244.6 257 47.9
FAN14G0255 Fragaria x ananassa HOM05D004373 ORTHO05D005203 2.0e-62 244.6 242 50.0
Lalb_Chr10g0106811 Lupinus albus HOM05D004373 ORTHO05D005203 2.0e-62 244.6 241 49.0
Sp4g13390 Schrenkiella parvula HOM05D004373 ORTHO05D005203 2.0e-62 244.6 254 48.4
FAN05G3369 Fragaria x ananassa HOM05D004373 ORTHO05D005203 2.7e-62 244.2 242 50.0
Ciclev10017823m.g Citrus clementina HOM05D004373 ORTHO05D005203 3.5e-62 243.8 238 50.8
Cc05_g09170 Coffea canephora HOM05D004373 ORTHO05D005203 3.5e-62 243.8 254 48.4
TWI60G0341 Tripterygium wilfordii HOM05D004373 ORTHO05D005203 3.5e-62 243.8 273 47.3
Glyma.02G288400 Glycine max HOM05D004373 ORTHO05D005203 4.6e-62 243.4 264 47.7
HanXRQChr10g0305621 Helianthus annuus HOM05D004373 ORTHO05D005203 4.6e-62 243.4 251 49.4
Hma1.2p1_0178F.1_g078200 Hydrangea macrophylla HOM05D004373 ORTHO05D005203 4.6e-62 243.4 248 48.8
Thecc.01G158800 Theobroma cacao HOM05D004373 ORTHO05D005203 4.6e-62 243.4 249 49.0
Aa31LG5G6000 Aethionema arabicum HOM05D004373 ORTHO05D005203 6.0e-62 243.0 237 50.2
LjContig00222g0009609 Lotus japonicus HOM05D004373 ORTHO05D005203 7.8e-62 242.7 248 50.0
Nn3g21008 Nelumbo nucifera HOM05D004373 ORTHO05D005203 7.8e-62 242.7 244 50.4
PSO675G5443 Papaver somniferum HOM05D004373 ORTHO05D005203 7.8e-62 242.7 247 48.2
BraA04t17887Z Brassica rapa HOM05D004373 ORTHO05D005203 1.0e-61 242.3 274 45.3
PSO541G0058 Papaver somniferum HOM05D004373 ORTHO05D005203 1.0e-61 242.3 247 47.8
CANSAT64G2747 Cannabis sativa HOM05D004373 ORTHO05D005203 1.3e-61 241.9 247 47.4
Thhalv10016964m.g Eutrema salsugineum HOM05D004373 ORTHO05D005203 1.7e-61 241.5 256 47.7
Gohir.D01G165500 Gossypium hirsutum HOM05D004373 ORTHO05D005203 1.7e-61 241.5 263 47.5
Gorai.002G205900 Gossypium raimondii HOM05D004373 ORTHO05D005203 1.7e-61 241.5 263 47.5
THA.LOC104800821 Tarenaya hassleriana HOM05D004373 ORTHO05D005203 1.7e-61 241.5 247 49.4
MSTRG.6768 Avicennia marina HOM05D004373 ORTHO05D005203 2.3e-61 241.1 259 49.0
Migut.M00217 Erythranthe guttata HOM05D004373 ORTHO05D005203 2.3e-61 241.1 245 48.2
BcaB02g10348 Brassica carinata HOM05D004373 ORTHO05D005203 3.9e-61 240.4 267 47.2
DCAR_013302 Daucus carota HOM05D004373 ORTHO05D005203 3.9e-61 240.4 251 47.8
Gohir.A01G174300 Gossypium hirsutum HOM05D004373 ORTHO05D005203 5.0e-61 240.0 263 47.1
AagrBONN_evm.TU.Sc2ySwM_228.3026 Anthoceros agrestis HOM05D004373 ORTHO05D005203 8.6e-61 239.2 279 46.6
Carub.0004s1212 Capsella rubella HOM05D004373 ORTHO05D005203 8.6e-61 239.2 264 45.8
HanXRQChr12g0367481 Helianthus annuus HOM05D004373 ORTHO05D005203 2.5e-60 237.7 244 47.1
SGA_v2.0_scaffold34G13681 Striga asiatica HOM05D004373 ORTHO05D005203 2.5e-60 237.7 242 48.8
CDE02G2202 Ceratophyllum demersum HOM05D004373 ORTHO05D005203 8.0e-59 232.6 254 47.6
SGA_v2.0_scaffold265G46119 Striga asiatica HOM05D004373 ORTHO05D005203 5.2e-58 229.9 272 44.9
CiPaw.03G195500 Carya illinoinensis HOM05D004373 ORTHO05D005203 6.8e-58 229.6 295 43.7
CsaV3_6G015650 Cucumis sativus L. HOM05D004373 ORTHO05D005203 6.8e-58 229.6 245 46.5
Pp3c16_12920 Physcomitrium patens HOM05D004373 ORTHO05D005203 8.9e-58 229.2 272 46.0
Hund00826 Selenicereus undatus HOM05D004373 ORTHO05D005203 1.5e-57 228.4 273 44.3
MELO3C019708.2 Cucumis melo HOM05D004373 ORTHO05D005203 2.6e-57 227.6 245 46.1
FAN02G0860 Fragaria x ananassa HOM05D004373 ORTHO05D005203 2.6e-57 227.6 261 45.6
MCO09G686 Micromonas commoda HOM05D004373 ORTHO05D005203 9.8e-57 225.7 248 52.0
BcaB06g28393 Brassica carinata HOM05D004373 ORTHO05D005203 2.9e-56 224.2 255 45.1
FAN09G0397 Fragaria x ananassa HOM05D003004 ORTHO05D003860 2.9e-56 224.2 235 48.1
SMO115G0194 Selaginella moellendorffii HOM05D004373 ORTHO05D005203 1.6e-54 218.4 212 51.4
Lj6A610T47 Lonicera japonica HOM05D004373 ORTHO05D005203 1.3e-53 215.3 257 45.1
Sabra14G0067500 Salix brachista HOM05D004373 ORTHO05D005203 3.0e-53 214.2 259 45.2
Sabra14G0069300 Salix brachista HOM05D004373 ORTHO05D005203 5.1e-53 213.4 331 39.0
RcHm_v2.0_Chr7g0218911 Rosa chinensis HOM05D004373 ORTHO05D005203 6.6e-53 213.0 217 49.3
CARHR124890 Cardamine hirsuta HOM05D004373 ORTHO05D005203 8.6e-53 212.6 213 48.8
Duzib147G0031 Durio zibethinus HOM05D004373 ORTHO05D005203 8.6e-53 212.6 250 45.2
ClCG02G018260 Citrullus lanatus HOM05D004373 ORTHO05D005203 1.5e-52 211.8 247 44.1
Haze_26971 Corylus avellana HOM05D004373 ORTHO05D005203 2.5e-52 211.1 251 43.8
Nitab4.5_0001121g0130 Nicotiana tabacum HOM05D004373 ORTHO05D005203 1.6e-51 208.4 237 44.7
SGA_v2.0_scaffold34G13678 Striga asiatica HOM05D004373 ORTHO05D005203 2.3e-50 204.5 213 48.4
vmacro12435 Vaccinium macrocarpon HOM05D004373 ORTHO05D005203 2.6e-49 201.1 252 44.0
Sed0027414 Sechium edule HOM05D004373 ORTHO05D005203 3.4e-49 200.7 216 45.8
Manes.17G059600 Manihot esculenta HOM05D004373 ORTHO05D005203 3.2e-47 194.1 195 50.3
Cre10.g423750 Chlamydomonas reinhardtii HOM05D004373 ORTHO05D005203 7.1e-47 193.0 238 45.0
Rhsim06G0122100 Rhododendron simsii HOM05D004373 ORTHO05D005203 6.0e-46 189.9 372 34.7
Manes.16G042550 Manihot esculenta HOM05D004373 ORTHO05D005203 7.8e-46 189.5 227 45.4
Gorai.002G206300 Gossypium raimondii HOM05D004373 ORTHO05D005203 1.3e-45 188.7 253 40.7
Sed0000249 Sechium edule HOM05D004373 ORTHO05D005203 4.9e-40 170.2 195 44.6
BcaC02g11171 Brassica carinata HOM05D004373 ORTHO05D005203 7.1e-39 166.4 229 41.5
Ca_29372_v3 Cicer arietinum L. HOM05D004373 ORTHO05D005203 9.3e-39 166.0 238 38.7
Cfa021389 Carpinus fangiana HOM05D003004 ORTHO05D003860 3.5e-38 164.1 170 50.6
Zm00001eb348030 Zea mays HOM05D004373 ORTHO05D005203 6.0e-38 163.3 175 51.4
Gohir.D01G165850 Gossypium hirsutum HOM05D004373 ORTHO05D005203 1.0e-37 162.5 235 40.0
Zm00001eb347990 Zea mays HOM05D004373 ORTHO05D005203 9.6e-36 156.0 163 50.9
Sc12g0003760 Simmondsia chinensis HOM05D004373 ORTHO05D005203 4.0e-34 150.6 161 50.3
HPP92_000565 Vanilla planifolia HOM05D004373 ORTHO05D005203 2.6e-33 147.9 135 53.3
TAR626G1318 Trochodendron aralioides HOM05D004373 ORTHO05D005203 5.4e-31 140.2 133 54.1
Os06g0152400 Oryza sativa ssp. japonica HOM05D004373 ORTHO05D005203 3.5e-30 137.5 169 43.2
Zm00001eb348180 Zea mays HOM05D004373 ORTHO05D005203 1.7e-29 135.2 124 55.6
Haze_27054 Corylus avellana HOM05D004373 ORTHO05D005203 2.3e-29 134.8 238 34.5
SGA_v2.0_scaffold425G51480 Striga asiatica HOM05D004373 ORTHO05D005203 1.1e-28 132.5 242 35.1
Gohir.A01G174700 Gossypium hirsutum HOM05D004373 ORTHO05D005203 1.5e-28 132.1 136 50.0
Cfa026944 Carpinus fangiana HOM05D001144 ORTHO05D125916 2.5e-28 131.3 271 36.9
SEGI_33797 Sequoiadendron giganteum HOM05D015735 ORTHO05D019347 1.6e-27 128.6 239 35.6
SEGI_03383 Sequoiadendron giganteum HOM05D015735 ORTHO05D019347 6.2e-27 126.7 232 35.3
AUR62024008 Chenopodium quinoa HOM05D004373 ORTHO05D005203 1.1e-26 125.9 108 56.5
GSVIVG01003300001 Vitis vinifera HOM05D004373 ORTHO05D005203 6.9e-26 123.2 125 51.2
QL07p048830 Quercus lobata HOM05D004373 ORTHO05D005203 1.5e-25 122.1 192 39.1
SEGI_25630 Sequoiadendron giganteum HOM05D015735 ORTHO05D019347 2.0e-25 121.7 232 35.3
Actinidia12819 Actinidia chinensis HOM05D003004 ORTHO05D005203 2.6e-25 121.3 210 36.2
AL283U10040 Arabidopsis lyrata HOM05D004373 ORTHO05D005203 1.3e-24 119.0 110 50.9
PRCOL_00005221 Prasinoderma coloniale HOM05D015735 ORTHO05D019347 2.9e-24 117.9 240 30.8
C04p19750 Brassica napus HOM05D004373 ORTHO05D005203 3.2e-23 114.4 133 45.1
BolC4t23508H Brassica oleracea HOM05D004373 ORTHO05D005203 3.2e-23 114.4 133 45.1
Pp3c19_4010 Physcomitrium patens HOM05D015735 ORTHO05D019347 3.2e-23 114.4 148 38.5
Nitab4.5_0002737g0030 Nicotiana tabacum HOM05D004373 ORTHO05D005203 5.4e-23 113.6 94 51.1
GSVIVG01003298001 Vitis vinifera HOM05D004373 ORTHO05D005203 7.1e-23 113.2 99 48.5
Hund07740 Selenicereus undatus HOM05D004373 ORTHO05D005203 2.7e-22 111.3 113 45.1
SEGI_21332 Sequoiadendron giganteum HOM05D004373 ORTHO05D005203 4.6e-22 110.5 99 49.5
BcaC02g11170 Brassica carinata HOM05D004373 ORTHO05D005203 6.0e-22 110.2 122 46.7
SEGI_13803 Sequoiadendron giganteum HOM05D015735 ORTHO05D019347 1.8e-21 108.6 232 34.1
QL08p043446 Quercus lobata HOM05D004373 ORTHO05D005203 8.7e-21 106.3 110 47.3
Mapoly0024s0082 Marchantia polymorpha HOM05D004373 ORTHO05D005203 1.6e-19 102.1 153 39.2
Nitab4.5_0002737g0010 Nicotiana tabacum HOM05D004373 ORTHO05D005203 3.7e-19 100.9 91 52.7
SEGI_14654 Sequoiadendron giganteum HOM05D015735 ORTHO05D019347 6.2e-19 100.1 232 29.7
SEGI_02080 Sequoiadendron giganteum HOM05D015735 ORTHO05D019347 2.6e-17 94.7 257 29.2
Zm00001eb348170 Zea mays HOM05D004373 ORTHO05D005203 1.1e-15 89.4 107 40.2
TAR626G1796 Trochodendron aralioides HOM05D004034 ORTHO05D004210 2.5e-15 88.2 75 48.0
Manes.12G052251 Manihot esculenta HOM05D004373 ORTHO05D005203 9.3e-15 86.3 74 54.1
QL08p043443 Quercus lobata HOM05D004373 ORTHO05D005203 3.5e-14 84.3 74 54.1
C04p19740 Brassica napus HOM05D004373 ORTHO05D005203 1.9e-12 78.6 85 44.7
Oeu051655.1 Olea europaea HOM05D004373 ORTHO05D005203 7.4e-12 76.6 63 54.0
CSS0011448 Camellia sinensis var. sinensis HOM05D004373 ORTHO05D005203 1.3e-11 75.9 56 55.4
Zm00001eb347980 Zea mays HOM05D004373 ORTHO05D005203 2.1e-11 75.1 66 50.0
BolC4t23507H Brassica oleracea HOM05D004373 ORTHO05D005203 6.9e-10 70.1 55 56.4
CSS0048638 Camellia sinensis var. sinensis HOM05D004373 ORTHO05D005203 2.6e-09 68.2 58 51.7
Actinidia28382 Actinidia chinensis HOM05D004373 ORTHO05D005203 2.9e-08 64.7 69 44.9
SEGI_33824 Sequoiadendron giganteum HOM05D004373 ORTHO05D005203 2.5e-07 61.6 60 41.7
Oeu025155.1 Olea europaea HOM05D004373 ORTHO05D005203 1.6e-06 58.9 58 48.3


User provided reference genes

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