Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PRCOL_00002743 Prasinoderma coloniale HOM05D003193 ORTHO05D004924 0.0e+00 4858.5 2711 100.0
Mapoly0135s0025 Marchantia polymorpha HOM05D003193 ORTHO05D004924 0.0e+00 1170.2 2513 36.4
CBR_g28040 Chara braunii HOM05D003193 ORTHO05D004924 0.0e+00 1112.8 2734 35.8
Sopen04g021290 Solanum pennellii HOM05D003193 ORTHO05D004924 0.0e+00 1104.0 2531 35.1
CsaV3_2G010070 Cucumis sativus L. HOM05D003193 ORTHO05D004924 0.0e+00 1095.5 2529 34.6
ClCG11G010250 Citrullus lanatus HOM05D003193 ORTHO05D004924 0.0e+00 1085.9 2468 34.4
Sed0015322 Sechium edule HOM05D003193 ORTHO05D004924 0.0e+00 1082.8 2536 34.1
MD12G1252000 Malus domestica HOM05D003193 ORTHO05D004924 0.0e+00 1081.2 2344 35.7
RcHm_v2.0_Chr3g0449041 Rosa chinensis HOM05D003193 ORTHO05D004924 7.4e-311 1072.0 2523 34.5
CSS0043374 Camellia sinensis var. sinensis HOM05D003193 ORTHO05D004924 4.1e-309 1066.2 1881 39.6
Manes.09G146200 Manihot esculenta HOM05D003193 ORTHO05D004924 2.0e-308 1063.9 2362 35.4
GSVIVG01026340001 Vitis vinifera HOM05D003193 ORTHO05D004924 5.9e-308 1062.4 2349 35.5
Eucgr.H04206 Eucalyptus grandis HOM05D003193 ORTHO05D004924 3.8e-307 1059.7 2375 35.7
CANSAT54G2238 Cannabis sativa HOM05D003193 ORTHO05D004924 1.1e-306 1058.1 2523 34.2
FAN05G0534 Fragaria x ananassa HOM05D003193 ORTHO05D004924 4.2e-306 1056.2 1858 39.1
FAN05G3617 Fragaria x ananassa HOM05D003193 ORTHO05D004924 5.5e-306 1055.8 1858 39.1
Gohir.D11G253200 Gossypium hirsutum HOM05D003193 ORTHO05D004924 1.6e-305 1054.3 2604 33.8
Cc09_g03080 Coffea canephora HOM05D003193 ORTHO05D004924 3.6e-305 1053.1 2566 33.9
Gorai.007G272000 Gossypium raimondii HOM05D003193 ORTHO05D004924 4.7e-305 1052.7 2605 33.9
ECA232G1705 Erigeron canadensis HOM05D003193 ORTHO05D004924 1.0e-304 1051.6 2314 35.5
Cre01.g015600 Chlamydomonas reinhardtii HOM05D003193 ORTHO05D004924 1.2e-303 1048.1 2757 36.0
Lsat_1_v5_gn_9_45981 Lactuca sativa HOM05D003193 ORTHO05D004924 1.5e-303 1047.7 2335 35.1
CSS0037513 Camellia sinensis var. sinensis HOM05D003193 ORTHO05D004924 2.2e-302 1043.9 2073 37.3
Lj1g0024446 Lotus japonicus HOM05D003193 ORTHO05D004924 3.7e-302 1043.1 2378 35.0
Gohir.A11G243500 Gossypium hirsutum HOM05D003193 ORTHO05D004924 6.3e-302 1042.3 2574 33.7
Potri.019G024200 Populus trichocarpa HOM05D003193 ORTHO05D004924 1.1e-301 1041.6 2353 35.7
FAN14G4461 Fragaria x ananassa HOM05D003193 ORTHO05D004924 2.9e-299 1033.5 2583 33.6
Dinv06951 Davidia involucrata HOM05D003193 ORTHO05D004924 8.5e-299 1031.9 2532 34.2
Haze_04475 Corylus avellana HOM05D003193 ORTHO05D004924 5.5e-298 1029.2 1996 38.0
Cpa.g.sc51.21 Carica papaya HOM05D003193 ORTHO05D004924 7.2e-298 1028.9 1644 40.5
Duzib177G0185 Durio zibethinus HOM05D003193 ORTHO05D004924 1.6e-297 1027.7 2579 33.2
Atru.chr2.1127 Acer truncatum HOM05D003193 ORTHO05D004924 2.7e-297 1026.9 2342 35.1
FvH4_6g01410 Fragaria vesca HOM05D003193 ORTHO05D004924 6.1e-297 1025.8 2573 33.5
COL.COLO4_37867 Corchorus olitorius HOM05D003193 ORTHO05D004924 4.0e-296 1023.1 1932 38.0
Nitab4.5_0002063g0040 Nicotiana tabacum HOM05D003193 ORTHO05D004924 5.2e-296 1022.7 2345 34.3
FAN14G5315 Fragaria x ananassa HOM05D003193 ORTHO05D004924 2.6e-295 1020.4 2583 33.4
HPP92_001295 Vanilla planifolia HOM05D003193 ORTHO05D004924 3.7e-294 1016.5 2504 33.5
Thecc.05G265800 Theobroma cacao HOM05D003193 ORTHO05D004924 8.3e-294 1015.4 2527 33.7
Lalb_Chr04g0261971 Lupinus albus HOM05D003193 ORTHO05D004924 3.1e-293 1013.4 2371 34.2
Sabra19G0034100 Salix brachista HOM05D003193 ORTHO05D004924 5.4e-293 1012.7 2353 35.3
Pp3c22_8910 Physcomitrium patens HOM05D003193 ORTHO05D004924 9.1e-293 1011.9 2517 34.4
Ca_09471_v3 Cicer arietinum L. HOM05D003193 ORTHO05D004924 5.9e-292 1009.2 2362 34.3
Hma1.2p1_0123F.1_g058180 Hydrangea macrophylla HOM05D003193 ORTHO05D004924 5.9e-292 1009.2 1348 44.8
arahy.Tifrunner.gnm1.ann1.9XF1RW Arachis hypogaea HOM05D003193 ORTHO05D004924 6.5e-291 1005.7 2360 34.4
PGR004G2196 Punica granatum HOM05D003193 ORTHO05D004924 6.5e-291 1005.7 2542 33.9
SGA_v2.0_scaffold62G21472 Striga asiatica HOM05D003193 ORTHO05D004924 1.9e-290 1004.2 2575 32.8
QL03p032698 Quercus lobata HOM05D003193 ORTHO05D004924 2.5e-290 1003.8 2677 33.0
Nn1g03055 Nelumbo nucifera HOM05D003193 ORTHO05D004924 3.2e-290 1003.4 2520 33.4
arahy.Tifrunner.gnm1.ann1.ZPSV32 Arachis hypogaea HOM05D003193 ORTHO05D004924 5.5e-290 1002.7 2370 34.3
HanXRQChr05g0145131 Helianthus annuus HOM05D003193 ORTHO05D004924 4.7e-289 999.6 2363 34.3
TWI60G0900 Tripterygium wilfordii HOM05D003193 ORTHO05D004924 1.8e-288 997.7 2548 33.4
Glyma.19G249900 Glycine max HOM05D003193 ORTHO05D004924 1.5e-287 994.6 2372 34.2
Sc09g0001810 Simmondsia chinensis HOM05D003193 ORTHO05D004924 1.7e-286 991.1 2381 33.9
ATR0787G173 Amborella trichopoda HOM05D003193 ORTHO05D004924 6.3e-286 989.2 1844 37.8
Glyma.03G252300 Glycine max HOM05D003193 ORTHO05D004924 4.1e-285 986.5 2383 33.9
Ciclev10018428m.g Citrus clementina HOM05D003193 ORTHO05D004924 5.4e-285 986.1 2359 34.2
Prupe.6G353600 Prunus persica HOM05D003193 ORTHO05D004924 2.7e-284 983.8 2569 32.9
EL10Ac4g09775 Beta vulgaris HOM05D003193 ORTHO05D004924 2.9e-283 980.3 2354 34.1
Rhsim05G0170000 Rhododendron simsii HOM05D003193 ORTHO05D004924 3.8e-283 979.9 2628 33.0
vmacro19974 Vaccinium macrocarpon HOM05D003193 ORTHO05D004924 3.3e-282 976.9 1934 36.7
Hma1.2p1_0123F.1_g058190 Hydrangea macrophylla HOM05D003193 ORTHO05D004924 7.3e-282 975.7 1227 45.8
unitig_37.g12282 Utricularia gibba HOM05D003193 ORTHO05D004924 8.0e-281 972.2 1822 37.7
FAN02G3021 Fragaria x ananassa HOM05D003193 ORTHO05D004924 2.0e-279 967.6 2568 32.7
VMungo0540G1922 Vigna mungo HOM05D003193 ORTHO05D004924 1.7e-278 964.5 2380 33.4
CiPaw.07G075200 Carya illinoinensis HOM05D003193 ORTHO05D004924 5.4e-277 959.5 1461 41.9
THA.LOC104821587 Tarenaya hassleriana HOM05D003193 ORTHO05D004924 2.7e-276 957.2 2519 32.8
Phvul.006G107000 Phaseolus vulgaris HOM05D003193 ORTHO05D004924 6.6e-275 952.6 2375 33.4
SMO356G0295 Selaginella moellendorffii HOM05D003193 ORTHO05D004924 1.2e-273 948.3 1946 36.5
DCAR_029994 Daucus carota HOM05D003193 ORTHO05D004924 2.1e-273 947.6 2556 32.7
Psat0s4268g0040 Pisum sativum HOM05D003193 ORTHO05D004924 4.1e-269 933.3 2633 32.2
Carub.0012s0016 Capsella rubella HOM05D003193 ORTHO05D004924 1.6e-268 931.4 2523 31.9
Lj2C47T5 Lonicera japonica HOM05D003193 ORTHO05D004924 1.7e-267 927.9 1453 41.1
AL2G19160 Arabidopsis lyrata HOM05D003193 ORTHO05D004924 1.5e-266 924.9 2566 31.7
AUR62000638 Chenopodium quinoa HOM05D003193 ORTHO05D004924 1.6e-265 921.4 1956 35.5
Solyc04g050510.3 Solanum lycopersicum HOM05D003193 ORTHO05D004924 5.2e-264 916.4 1346 42.8
A02p23930 Brassica napus HOM05D003193 ORTHO05D004924 1.3e-262 911.8 2562 31.9
PSO764G0333 Papaver somniferum HOM05D003193 ORTHO05D004924 1.3e-262 911.8 2541 31.9
Thhalv10022486m.g Eutrema salsugineum HOM05D003193 ORTHO05D004924 4.9e-262 909.8 2620 31.6
BraA02t07385Z Brassica rapa HOM05D003193 ORTHO05D004924 6.4e-262 909.4 2562 31.9
MBI07_g08903_MAGBIO Magnolia biondii HOM05D003193 ORTHO05D004924 1.1e-261 908.7 1898 36.2
PSO832G2952 Papaver somniferum HOM05D003193 ORTHO05D004924 1.9e-261 907.9 2520 32.1
Aa31LG2G2030 Aethionema arabicum HOM05D003193 ORTHO05D004924 2.4e-261 907.5 2528 31.7
Migut.F02049 Erythranthe guttata HOM05D003193 ORTHO05D004924 2.4e-261 907.5 2523 32.0
BcaC03g16020 Brassica carinata HOM05D003193 ORTHO05D004924 5.4e-261 906.4 2560 32.0
C02p37720 Brassica napus HOM05D003193 ORTHO05D004924 5.4e-261 906.4 2567 32.0
Medtr7g116425 Medicago truncatula HOM05D003193 ORTHO05D004924 2.1e-260 904.4 2630 31.8
AT1G64790 Arabidopsis thaliana HOM05D003193 ORTHO05D004924 1.3e-259 901.7 2059 34.4
BolC2t09791H Brassica oleracea HOM05D003193 ORTHO05D004924 1.1e-258 898.7 2582 31.8
MCO11G232 Micromonas commoda HOM05D003193 ORTHO05D004924 1.5e-258 898.3 1269 44.3
TPR.G4710 Trifolium pratense HOM05D003193 ORTHO05D004924 3.1e-256 890.6 2624 31.4
Aqoxy5G00090 Aquilegia oxysepala HOM05D003193 ORTHO05D004924 6.8e-256 889.4 2524 31.7
BcaB05g23590 Brassica carinata HOM05D003193 ORTHO05D004924 7.6e-255 885.9 2498 31.8
Zm00001eb055550 Zea mays HOM05D003193 ORTHO05D004924 2.9e-254 884.0 2527 32.0
AUR62006993 Chenopodium quinoa HOM05D003193 ORTHO05D004924 3.2e-253 880.6 2613 31.3
SpUn0003_0310 Schrenkiella parvula HOM05D003193 ORTHO05D004924 2.7e-252 877.5 2516 31.6
Peaxi162Scf00071g00269 Petunia axillaris HOM05D003193 ORTHO05D004924 1.9e-250 871.3 1328 41.6
CAN.G131.15 Capsicum annuum HOM05D003193 ORTHO05D004924 2.1e-249 867.8 1836 36.1
SalBow1G5750 Salvia bowleyana HOM05D003193 ORTHO05D004924 3.5e-244 850.5 1828 35.6
Oeu055042.1 Olea europaea HOM05D003193 ORTHO05D004924 1.1e-240 839.0 1012 46.7
SHI15636 Sapria himalayana HOM05D003193 ORTHO05D004924 1.9e-237 828.2 1744 36.0
Hund07170 Selenicereus undatus HOM05D003193 ORTHO05D004924 9.0e-232 809.3 1245 41.2
TAR636G2059 Trochodendron aralioides HOM05D003193 ORTHO05D004924 5.8e-231 806.6 1286 41.3
TAR365G0326 Trochodendron aralioides HOM05D003193 ORTHO05D004924 1.3e-230 805.4 2525 30.5
AagrBONN_evm.TU.Sc2ySwM_344.2455 Anthoceros agrestis HOM05D003193 ORTHO05D004924 3.9e-227 793.9 2066 32.4
Os03g0721200 Oryza sativa ssp. japonica HOM05D003193 ORTHO05D004924 1.2e-207 729.2 1308 38.4
MD04G1233800 Malus domestica HOM05D003193 ORTHO05D004924 2.3e-171 608.6 1605 31.3
CDE09G0882 Ceratophyllum demersum HOM05D003193 ORTHO05D004924 4.0e-147 528.1 1752 29.1
Actinidia03822 Actinidia chinensis HOM05D003193 ORTHO05D004924 6.4e-137 494.2 1604 30.9
SalBow1G0653 Salvia bowleyana HOM05D003193 ORTHO05D004924 6.0e-135 487.6 1190 33.8
SEGI_35396 Sequoiadendron giganteum HOM05D003193 ORTHO05D004924 3.6e-132 478.4 459 52.7
MELO3C008660.2 Cucumis melo HOM05D003193 ORTHO05D004924 7.1e-128 464.2 1282 32.2
Ah.02g118790 Amaranthus hybridus HOM05D003193 ORTHO05D004924 3.9e-126 458.4 749 40.6
CARHR056140 Cardamine hirsuta HOM05D003193 ORTHO05D004924 8.7e-102 377.5 969 33.4
Zm00001eb208180 Zea mays HOM05D003193 ORTHO05D004924 3.3e-85 322.4 348 49.7
Actinidia03821 Actinidia chinensis HOM05D003193 ORTHO05D004924 5.0e-81 308.5 978 30.5
Psat2g117360 Pisum sativum HOM05D003193 ORTHO05D004924 9.4e-80 304.3 503 40.6
Actinidia06816 Actinidia chinensis HOM05D003193 ORTHO05D004924 9.7e-77 294.3 752 33.5
CDE09G0101 Ceratophyllum demersum HOM05D003193 ORTHO05D004924 1.5e-72 280.4 615 35.3
Zm00001eb208190 Zea mays HOM05D003193 ORTHO05D004924 5.7e-69 268.5 829 31.4
Lsat_1_v5_gn_7_43461 Lactuca sativa HOM05D003193 ORTHO05D004924 1.4e-62 247.3 445 36.9
Nitab4.5_0000841g0120 Nicotiana tabacum HOM05D003193 ORTHO05D004924 1.4e-62 247.3 729 31.4
SalBow1G3637 Salvia bowleyana HOM05D003193 ORTHO05D004924 7.0e-59 235.0 518 35.9
Peaxi162Scf00071g02610 Petunia axillaris HOM05D003193 ORTHO05D004924 5.0e-49 202.2 1239 26.2
MCO13G622 Micromonas commoda HOM05D000681 ORTHO05D025872 1.9e-48 200.3 441 32.9
Solyc04g050520.3 Solanum lycopersicum HOM05D003193 ORTHO05D004924 8.9e-46 191.4 1172 26.4
CAN.G131.16 Capsicum annuum HOM05D003193 ORTHO05D004924 2.0e-45 190.3 775 28.5
Hund28419 Selenicereus undatus HOM05D003193 ORTHO05D004924 2.6e-45 189.9 514 32.7
Hund28421 Selenicereus undatus HOM05D003193 ORTHO05D004924 2.6e-45 189.9 514 32.7
FAN09G1546 Fragaria x ananassa HOM05D003193 ORTHO05D004924 1.6e-42 180.6 1300 25.2
Lsat_1_v5_gn_8_84401 Lactuca sativa HOM05D003193 ORTHO05D004924 7.8e-42 178.3 385 33.0
SEGI_04281 Sequoiadendron giganteum HOM05D003193 ORTHO05D004924 1.1e-40 174.5 406 35.5
Lsat_1_v5_gn_3_136501 Lactuca sativa HOM05D003193 ORTHO05D004924 1.5e-40 174.1 392 32.4
Lsat_1_v5_gn_2_9720 Lactuca sativa HOM05D003193 ORTHO05D004924 4.3e-40 172.6 370 34.6
Nitab4.5_0019712g0010 Nicotiana tabacum HOM05D003193 ORTHO05D004924 3.7e-36 159.5 139 53.2
Nitab4.5_0018351g0010 Nicotiana tabacum HOM05D003193 ORTHO05D023334 1.6e-34 154.1 443 30.5
Actinidia26097 Actinidia chinensis HOM05D003193 ORTHO05D004924 5.1e-33 149.1 231 42.0
PRCOL_00000464 Prasinoderma coloniale HOM05D000681 ORTHO05D025872 8.6e-33 148.3 267 34.8
Psat2g117480 Pisum sativum HOM05D003193 ORTHO05D029199 1.4e-30 141.0 143 52.4
Cre14.g615950 Chlamydomonas reinhardtii HOM05D000681 ORTHO05D028791 1.3e-28 134.4 293 32.1
Lsat_1_v5_gn_8_52980 Lactuca sativa HOM05D003193 ORTHO05D004924 9.2e-27 128.3 195 39.0
Cre04.g222700 Chlamydomonas reinhardtii HOM05D000681 ORTHO05D028791 2.7e-26 126.7 293 30.0
PRCOL_00007280 Prasinoderma coloniale HOM05D000681 ORTHO05D028791 7.6e-21 108.6 296 28.4
Lsat_1_v5_gn_2_111060 Lactuca sativa HOM05D003193 ORTHO05D000541 7.1e-19 102.1 111 49.5
SEGI_23671 Sequoiadendron giganteum HOM05D003193 ORTHO05D004924 7.8e-18 98.6 314 30.6
Actinidia06817 Actinidia chinensis HOM05D003193 ORTHO05D004924 5.1e-17 95.9 119 42.0
Nitab4.5_0019712g0020 Nicotiana tabacum HOM05D003193 ORTHO05D004924 2.4e-14 87.0 79 57.0
Lsat_1_v5_gn_5_100381 Lactuca sativa HOM05D003193 ORTHO05D036451 1.5e-13 84.3 134 40.3
Actinidia06820 Actinidia chinensis HOM05D003193 ORTHO05D004924 2.4e-11 77.0 144 38.9
DCAR_025592 Daucus carota HOM05D003193 ORTHO05D029199 1.2e-10 74.7 52 67.3
Ah.02g118650 Amaranthus hybridus HOM05D003193 ORTHO05D004924 1.6e-10 74.3 69 49.3
Nitab4.5_0001498g0050 Nicotiana tabacum HOM05D003193 ORTHO05D004924 2.7e-10 73.6 1083 23.0
Lsat_1_v5_gn_5_158740 Lactuca sativa HOM05D000727 ORTHO05D000541 1.7e-09 70.9 84 48.8
Lsat_1_v5_gn_1_12580 Lactuca sativa HOM05D003193 ORTHO05D036451 3.9e-09 69.7 170 34.7
Lj2A47G46 Lonicera japonica HOM05D003193 ORTHO05D004924 3.9e-09 69.7 402 28.9
AL2G19220 Arabidopsis lyrata HOM05D003193 ORTHO05D004924 1.5e-08 67.8 103 38.8
Lsat_1_v5_gn_8_87461 Lactuca sativa HOM05D003193 ORTHO05D000541 6.2e-07 62.4 68 44.1
DCAR_015795 Daucus carota HOM05D003193 ORTHO05D029199 1.4e-06 61.2 44 65.9


User provided reference genes

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