Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PRCOL_00002078 Prasinoderma coloniale HOM05D004853 ORTHO05D005865 0.0e+00 1125.9 584 100.0
CBR_g40148 Chara braunii HOM05D004853 ORTHO05D005865 1.6e-69 268.1 606 32.5
Pp3c23_19980 Physcomitrium patens HOM05D004853 ORTHO05D005865 6.3e-66 256.1 599 33.9
Aqoxy1G00113 Aquilegia oxysepala HOM05D004853 ORTHO05D005865 1.4e-65 255.0 597 31.8
MCO03G169 Micromonas commoda HOM05D004853 ORTHO05D005865 6.5e-63 246.1 635 31.5
AT3G25100 Arabidopsis thaliana HOM05D004853 ORTHO05D005865 3.2e-62 243.8 585 32.0
MSTRG.18839 Avicennia marina HOM05D004853 ORTHO05D005865 7.2e-62 242.7 583 32.2
SalBow6G4054 Salvia bowleyana HOM05D004853 ORTHO05D005865 9.4e-62 242.3 596 31.2
SEGI_13565 Sequoiadendron giganteum HOM05D004853 ORTHO05D005865 9.4e-62 242.3 591 32.0
BcaC06g35779 Brassica carinata HOM05D004853 ORTHO05D005865 1.2e-61 241.9 576 31.8
BolC7t41562H Brassica oleracea HOM05D004853 ORTHO05D005865 1.2e-61 241.9 576 31.8
ClCG09G008800 Citrullus lanatus HOM05D004853 ORTHO05D005865 1.2e-61 241.9 577 30.7
CsaV3_7G026150 Cucumis sativus L. HOM05D004853 ORTHO05D005865 1.6e-61 241.5 587 30.5
Duzib138G1868 Durio zibethinus HOM05D004853 ORTHO05D005865 2.7e-61 240.7 602 29.4
CSS0034871 Camellia sinensis var. sinensis HOM05D004853 ORTHO05D005865 4.7e-61 240.0 608 30.9
COL.COLO4_15628 Corchorus olitorius HOM05D004853 ORTHO05D005865 4.7e-61 240.0 594 30.5
MBI19_g34091_MAGBIO Magnolia biondii HOM05D004853 ORTHO05D005865 4.7e-61 240.0 584 31.8
Oeu037767.1 Olea europaea HOM05D004853 ORTHO05D005865 4.7e-61 240.0 582 32.3
Phvul.008G130700 Phaseolus vulgaris HOM05D004853 ORTHO05D005865 6.1e-61 239.6 574 30.3
CARHR101430 Cardamine hirsuta HOM05D004853 ORTHO05D005865 8.0e-61 239.2 585 31.3
Solyc09g059440.1 Solanum lycopersicum HOM05D004853 ORTHO05D005865 1.4e-60 238.4 579 31.3
AUR62038821 Chenopodium quinoa HOM05D004853 ORTHO05D005865 1.8e-60 238.0 557 29.3
SGA_v2.0_scaffold18G08333 Striga asiatica HOM05D004853 ORTHO05D005865 1.8e-60 238.0 576 31.4
A07p07260 Brassica napus HOM05D004853 ORTHO05D005865 2.3e-60 237.7 572 30.4
AL3G40790 Arabidopsis lyrata HOM05D004853 ORTHO05D005865 3.0e-60 237.3 589 31.6
MELO3C021058.2 Cucumis melo HOM05D004853 ORTHO05D005865 3.0e-60 237.3 577 30.5
Glyma.18G167000 Glycine max HOM05D004853 ORTHO05D005865 3.0e-60 237.3 580 29.8
unitig_899.g15017 Utricularia gibba HOM05D004853 ORTHO05D005865 3.0e-60 237.3 586 32.3
BraA07t28514Z Brassica rapa HOM05D004853 ORTHO05D005865 4.0e-60 236.9 572 30.4
Aa31LG8G11930 Aethionema arabicum HOM05D004853 ORTHO05D005865 5.2e-60 236.5 596 31.5
Carub.0003s2543 Capsella rubella HOM05D004853 ORTHO05D005865 5.2e-60 236.5 592 31.2
Gorai.001G232300 Gossypium raimondii HOM05D004853 ORTHO05D005865 5.2e-60 236.5 593 31.4
Sed0013559 Sechium edule HOM05D004853 ORTHO05D005865 5.2e-60 236.5 585 30.6
Gohir.D07G206000 Gossypium hirsutum HOM05D004853 ORTHO05D005865 6.8e-60 236.1 594 29.8
AUR62043704 Chenopodium quinoa HOM05D004853 ORTHO05D005865 8.8e-60 235.7 557 29.1
Gohir.A07G199600 Gossypium hirsutum HOM05D004853 ORTHO05D005865 8.8e-60 235.7 595 31.1
Gorai.007G156000 Gossypium raimondii HOM05D004853 ORTHO05D005865 8.8e-60 235.7 594 31.1
Actinidia09471 Actinidia chinensis HOM05D004853 ORTHO05D005865 1.2e-59 235.3 604 30.3
TAR623G1093 Trochodendron aralioides HOM05D004853 ORTHO05D005865 1.2e-59 235.3 583 30.9
Manes.13G048900 Manihot esculenta HOM05D004853 ORTHO05D005865 1.5e-59 235.0 589 30.9
QL09p052469 Quercus lobata HOM05D004853 ORTHO05D005865 1.5e-59 235.0 586 31.4
Thecc.01G221500 Theobroma cacao HOM05D004853 ORTHO05D005865 1.5e-59 235.0 597 28.8
BcaC01g03244 Brassica carinata HOM05D004853 ORTHO05D005865 2.0e-59 234.6 581 31.3
C03p54420 Brassica napus HOM05D004853 ORTHO05D005865 2.0e-59 234.6 581 31.3
BolC3t17728H Brassica oleracea HOM05D004853 ORTHO05D005865 2.0e-59 234.6 581 31.3
Sp3g22680 Schrenkiella parvula HOM05D004853 ORTHO05D005865 2.0e-59 234.6 601 30.1
Thhalv10002454m.g Eutrema salsugineum HOM05D004853 ORTHO05D005865 2.6e-59 234.2 585 31.3
QL09p051756 Quercus lobata HOM05D004853 ORTHO05D005865 2.6e-59 234.2 586 31.4
THA.LOC104808789 Tarenaya hassleriana HOM05D004853 ORTHO05D005865 2.6e-59 234.2 590 31.7
VMungo1383G0658 Vigna mungo HOM05D004853 ORTHO05D005865 2.6e-59 234.2 576 30.4
Psat3g148200 Pisum sativum HOM05D004853 ORTHO05D005865 3.4e-59 233.8 619 29.4
Actinidia23713 Actinidia chinensis HOM05D004853 ORTHO05D005865 4.4e-59 233.4 596 30.4
Nitab4.5_0007437g0010 Nicotiana tabacum HOM05D004853 ORTHO05D005865 5.7e-59 233.0 579 31.1
Potri.015G090600 Populus trichocarpa HOM05D004853 ORTHO05D005865 5.7e-59 233.0 578 31.1
Sopen09g022590 Solanum pennellii HOM05D004853 ORTHO05D005865 5.7e-59 233.0 579 30.9
TAR376G0972 Trochodendron aralioides HOM05D004853 ORTHO05D005865 5.7e-59 233.0 584 31.0
BraA03t13534Z Brassica rapa HOM05D004853 ORTHO05D005865 7.5e-59 232.6 585 30.9
Nitab4.5_0000045g0440 Nicotiana tabacum HOM05D004853 ORTHO05D005865 7.5e-59 232.6 579 31.3
Lj3C839T9 Lonicera japonica HOM05D004853 ORTHO05D005865 9.8e-59 232.3 595 30.9
FAN24G1506 Fragaria x ananassa HOM05D004853 ORTHO05D005865 1.7e-58 231.5 591 27.4
BcaB06g26724 Brassica carinata HOM05D004853 ORTHO05D005865 2.2e-58 231.1 600 30.5
Duzib133G1132 Durio zibethinus HOM05D004853 ORTHO05D005865 2.2e-58 231.1 600 28.8
Glyma.08G349400 Glycine max HOM05D004853 ORTHO05D005865 2.2e-58 231.1 583 29.7
CDE07G1728 Ceratophyllum demersum HOM05D004853 ORTHO05D005865 2.8e-58 230.7 580 29.1
Os12g0124700 Oryza sativa ssp. japonica HOM05D004853 ORTHO05D005865 2.8e-58 230.7 595 32.1
Cfa004377 Carpinus fangiana HOM05D004853 ORTHO05D005865 3.7e-58 230.3 585 29.2
Prupe.8G199700 Prunus persica HOM05D004853 ORTHO05D005865 3.7e-58 230.3 590 28.8
FvH4_2g18640 Fragaria vesca HOM05D004853 ORTHO05D005865 4.9e-58 229.9 593 27.2
FAN27G1226 Fragaria x ananassa HOM05D004853 ORTHO05D005865 4.9e-58 229.9 591 27.4
MD10G1160500 Malus domestica HOM05D004853 ORTHO05D005865 4.9e-58 229.9 590 27.5
Aa31LG9G4920 Aethionema arabicum HOM05D004853 ORTHO05D005865 6.3e-58 229.6 588 31.6
FAN15G3437 Fragaria x ananassa HOM05D004853 ORTHO05D005865 6.3e-58 229.6 593 27.2
Os11g0128400 Oryza sativa ssp. japonica HOM05D004853 ORTHO05D005865 6.3e-58 229.6 607 31.8
Peaxi162Scf00238g00032 Petunia axillaris HOM05D004853 ORTHO05D005865 6.3e-58 229.6 577 30.3
RcHm_v2.0_Chr6g0284201 Rosa chinensis HOM05D004853 ORTHO05D005865 8.3e-58 229.2 589 29.5
CiPaw.02G023000 Carya illinoinensis HOM05D004853 ORTHO05D005865 1.1e-57 228.8 594 29.8
Cc01_g16780 Coffea canephora HOM05D004853 ORTHO05D005865 1.1e-57 228.8 603 29.7
Nn7g37081 Nelumbo nucifera HOM05D004853 ORTHO05D005865 1.1e-57 228.8 583 29.8
TWI36G0697 Tripterygium wilfordii HOM05D004853 ORTHO05D005865 1.1e-57 228.8 591 29.3
Ca_06554_v3 Cicer arietinum L. HOM05D004853 ORTHO05D005865 1.4e-57 228.4 603 28.5
Hma1.2p1_0226F.1_g095440 Hydrangea macrophylla HOM05D004853 ORTHO05D005865 1.4e-57 228.4 582 30.4
Hma1.2p1_2668F.1_g326580 Hydrangea macrophylla HOM05D004853 ORTHO05D005865 1.4e-57 228.4 582 30.4
BcaB08g34434 Brassica carinata HOM05D004853 ORTHO05D005865 1.8e-57 228.0 598 30.8
C07p10970 Brassica napus HOM05D004853 ORTHO05D005865 1.8e-57 228.0 521 30.7
Ciclev10019411m.g Citrus clementina HOM05D004853 ORTHO05D005865 1.8e-57 228.0 585 29.7
Dinv12655 Davidia involucrata HOM05D004853 ORTHO05D005865 2.4e-57 227.6 606 31.4
Sabra15G0112700 Salix brachista HOM05D004853 ORTHO05D005865 2.4e-57 227.6 586 30.5
CiPaw.01G049500 Carya illinoinensis HOM05D004853 ORTHO05D005865 3.1e-57 227.3 604 28.3
Eucgr.H00778 Eucalyptus grandis HOM05D004853 ORTHO05D005865 3.1e-57 227.3 581 30.3
Cpa.g.sc43.113 Carica papaya HOM05D004853 ORTHO05D005865 4.1e-57 226.9 602 28.7
MD05G1172300 Malus domestica HOM05D004853 ORTHO05D005865 4.1e-57 226.9 590 28.3
SMO307G0064 Selaginella moellendorffii HOM05D004853 ORTHO05D005865 4.1e-57 226.9 558 28.7
Haze_15035 Corylus avellana HOM05D004853 ORTHO05D005865 5.4e-57 226.5 581 28.9
Lsat_1_v5_gn_8_89600 Lactuca sativa HOM05D004853 ORTHO05D005865 5.4e-57 226.5 602 29.9
PGSC0003DMG400027946 Solanum tuberosum HOM05D004853 ORTHO05D005865 7.0e-57 226.1 579 30.4
EL10Ac7g17891 Beta vulgaris HOM05D004853 ORTHO05D005865 9.1e-57 225.7 587 30.0
CANSAT01G2121 Cannabis sativa HOM05D004853 ORTHO05D005865 9.1e-57 225.7 589 29.9
CDE04G0889 Ceratophyllum demersum HOM05D004853 ORTHO05D005865 1.2e-56 225.3 557 29.8
DCAR_004725 Daucus carota HOM05D004853 ORTHO05D005865 1.2e-56 225.3 594 30.5
Rhsim09G0044900 Rhododendron simsii HOM05D004853 ORTHO05D005865 1.2e-56 225.3 587 29.6
unitig_736.g22343 Utricularia gibba HOM05D004853 ORTHO05D005865 1.2e-56 225.3 586 29.2
Mapoly0045s0042 Marchantia polymorpha HOM05D004853 ORTHO05D005865 3.5e-56 223.8 593 30.7
Ah.15g093470 Amaranthus hybridus HOM05D004853 ORTHO05D005865 5.9e-56 223.0 578 31.1
Lj1g0018468 Lotus japonicus HOM05D004853 ORTHO05D005865 5.9e-56 223.0 594 29.5
Sc17g0002190 Simmondsia chinensis HOM05D004853 ORTHO05D005865 5.9e-56 223.0 604 29.0
CAN.G128.1 Capsicum annuum HOM05D004853 ORTHO05D005865 1.3e-55 221.9 580 29.8
HanXRQChr14g0439971 Helianthus annuus HOM05D004853 ORTHO05D005865 1.3e-55 221.9 598 28.8
PSO384G4190 Papaver somniferum HOM05D004853 ORTHO05D005865 2.9e-55 220.7 580 29.3
Zm00001eb405460 Zea mays HOM05D004853 ORTHO05D005865 2.9e-55 220.7 600 30.0
HanXRQChr10g0288791 Helianthus annuus HOM05D004853 ORTHO05D005865 6.6e-55 219.5 577 29.6
Atru.chr6.1420 Acer truncatum HOM05D004853 ORTHO05D005865 1.5e-54 218.4 583 29.5
Migut.D02501 Erythranthe guttata HOM05D004853 ORTHO05D005865 1.9e-54 218.0 590 29.0
Medtr7g056153 Medicago truncatula HOM05D004853 ORTHO05D005865 2.5e-54 217.6 589 29.5
A03p44030 Brassica napus HOM05D004853 ORTHO05D005865 4.3e-54 216.9 495 32.5
Lalb_Chr03g0041521 Lupinus albus HOM05D004853 ORTHO05D005865 9.5e-54 215.7 584 27.6
CAN.G257.5 Capsicum annuum HOM05D004853 ORTHO05D005865 4.7e-53 213.4 492 31.7
ECA236G0997 Erigeron canadensis HOM05D004853 ORTHO05D005865 2.3e-52 211.1 580 29.8
ATR0068G062 Amborella trichopoda HOM05D004853 ORTHO05D005865 1.3e-50 205.3 552 28.8
GSVIVG01000797001 Vitis vinifera HOM05D004853 ORTHO05D005865 1.7e-50 204.9 553 27.1
Gohir.D07G205900 Gossypium hirsutum HOM05D004853 ORTHO05D005865 1.1e-49 202.2 594 26.9
Gohir.D11G145500 Gossypium hirsutum HOM05D004853 ORTHO05D005865 1.3e-47 195.3 406 30.5
DCAR_004733 Daucus carota HOM05D004853 ORTHO05D005865 2.3e-47 194.5 561 27.5
AL706U10010 Arabidopsis lyrata HOM05D004853 ORTHO05D005865 1.5e-46 191.8 449 32.3
Gohir.A11G139300 Gossypium hirsutum HOM05D004853 ORTHO05D005865 5.6e-46 189.9 601 28.5
TPR.G6418 Trifolium pratense HOM05D004853 ORTHO05D005865 6.8e-44 183.0 628 27.2
Dinv19180 Davidia involucrata HOM05D004853 ORTHO05D005865 2.4e-41 174.5 548 27.4
Gorai.001G232100 Gossypium raimondii HOM05D004853 ORTHO05D005865 3.5e-40 170.6 559 26.5
AagrBONN_evm.TU.Sc2ySwM_117.731 Anthoceros agrestis HOM05D004853 ORTHO05D005865 2.3e-39 167.9 600 25.5
CBR_g23403 Chara braunii HOM05D004853 ORTHO05D005865 4.3e-38 163.7 326 34.7
CSS0045377 Camellia sinensis var. sinensis HOM05D004853 ORTHO05D005865 1.2e-35 155.6 471 28.7
Gohir.A07G199500 Gossypium hirsutum HOM05D004853 ORTHO05D005865 2.1e-32 144.8 555 23.6
CAN.G186.62 Capsicum annuum HOM05D004853 ORTHO05D005865 3.3e-22 110.9 191 33.0
arahy.Tifrunner.gnm1.ann1.23GIHT Arachis hypogaea HOM05D004853 ORTHO05D005865 9.9e-19 99.4 320 25.3
Cre06.g270250 Chlamydomonas reinhardtii HOM05D004853 ORTHO05D005865 1.3e-15 89.0 608 20.6
CSS0009877 Camellia sinensis var. sinensis HOM05D004853 ORTHO05D005865 2.5e-14 84.7 133 32.3
HPP92_007506 Vanilla planifolia HOM05D004853 ORTHO05D005865 1.3e-10 72.4 208 30.3
Sabra02G0118100 Salix brachista HOM05D004853 ORTHO05D005865 2.4e-09 68.2 136 29.4
Ah.03g146210 Amaranthus hybridus HOM05D004853 ORTHO05D005865 1.3e-07 62.4 151 30.5
CBR_g23402 Chara braunii HOM05D004853 ORTHO05D005865 9.6e-06 56.2 135 32.6
Zm00001eb163660 Zea mays HOM05D004853 ORTHO05D005865 9.6e-06 56.2 116 31.9


User provided reference genes

Program Settings