Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PRCOL_00002029 Prasinoderma coloniale HOM05D004851 ORTHO05D006091 2.2e-252 875.2 451 100.0
MCO11G545 Micromonas commoda HOM05D004851 ORTHO05D006091 1.3e-15 88.6 127 38.6
SMO361G0506 Selaginella moellendorffii HOM05D004851 ORTHO05D006091 1.9e-14 84.7 161 32.9
CBR_g50476 Chara braunii HOM05D004851 ORTHO05D006091 3.1e-12 77.4 124 34.7
Aa31LG2G2120 Aethionema arabicum HOM05D004851 ORTHO05D006091 5.3e-12 76.6 124 32.3
AagrBONN_evm.TU.Sc2ySwM_228.993 Anthoceros agrestis HOM05D004851 ORTHO05D006091 6.9e-12 76.3 117 33.3
Pp3c8_16260 Physcomitrium patens HOM05D004851 ORTHO05D006091 9.0e-12 75.9 220 26.8
Mapoly0098s0036 Marchantia polymorpha HOM05D004851 ORTHO05D006091 1.2e-11 75.5 144 29.2
Carub.0002s0996 Capsella rubella HOM05D004851 ORTHO05D006091 3.4e-11 73.9 211 26.1
PSO170G2140 Papaver somniferum HOM05D004851 ORTHO05D006091 3.4e-11 73.9 124 29.0
CDE02G1790 Ceratophyllum demersum HOM05D004851 ORTHO05D006091 4.5e-11 73.6 227 26.0
AL2G19340 Arabidopsis lyrata HOM05D004851 ORTHO05D006091 5.9e-11 73.2 213 26.3
PRCOL_00000384 Prasinoderma coloniale HOM05D005621 ORTHO05D007248 5.9e-11 73.2 195 28.7
AT1G64880 Arabidopsis thaliana HOM05D004851 ORTHO05D006091 7.7e-11 72.8 213 26.3
A02p23990 Brassica napus HOM05D004851 ORTHO05D006091 1.3e-10 72.0 213 25.8
BraA02t07394Z Brassica rapa HOM05D004851 ORTHO05D006091 1.3e-10 72.0 213 25.8
Thhalv10002490m.g Eutrema salsugineum HOM05D004851 ORTHO05D006091 1.3e-10 72.0 213 25.8
Sp5g19120 Schrenkiella parvula HOM05D004851 ORTHO05D006091 1.3e-10 72.0 213 25.8
Duzib106G1281 Durio zibethinus HOM05D004851 ORTHO05D006091 1.7e-10 71.6 221 25.8
vmacro07474 Vaccinium macrocarpon HOM05D004851 ORTHO05D006091 1.7e-10 71.6 124 30.6
Ca_17637_v3 Cicer arietinum L. HOM05D004851 ORTHO05D006091 2.2e-10 71.2 240 24.6
ECA246G2460 Erigeron canadensis HOM05D004851 ORTHO05D006091 2.2e-10 71.2 226 24.8
Glyma.04G079800 Glycine max HOM05D004851 ORTHO05D006091 2.2e-10 71.2 124 29.8
BcaB05g23595 Brassica carinata HOM05D004851 ORTHO05D006091 2.9e-10 70.9 213 26.3
Medtr8g093680 Medicago truncatula HOM05D004851 ORTHO05D006091 2.9e-10 70.9 256 25.8
BcaC03g16030 Brassica carinata HOM05D004851 ORTHO05D006091 3.8e-10 70.5 227 26.0
C02p37840 Brassica napus HOM05D004851 ORTHO05D006091 3.8e-10 70.5 227 26.0
BolC2t09800H Brassica oleracea HOM05D004851 ORTHO05D006091 3.8e-10 70.5 227 26.0
Nn4g24557 Nelumbo nucifera HOM05D004851 ORTHO05D006091 3.8e-10 70.5 238 25.6
LjContig00389g0015553 Lotus japonicus HOM05D004851 ORTHO05D006091 5.0e-10 70.1 241 24.9
SGA_v2.0_scaffold75G25015 Striga asiatica HOM05D004851 ORTHO05D006091 5.0e-10 70.1 124 29.0
CARHR056280 Cardamine hirsuta HOM05D004851 ORTHO05D006091 6.5e-10 69.7 213 25.4
Solyc11g008710.2 Solanum lycopersicum HOM05D004851 ORTHO05D006091 6.5e-10 69.7 222 24.8
DCAR_008779 Daucus carota HOM05D004851 ORTHO05D006091 8.5e-10 69.3 220 25.9
ECA246G3904 Erigeron canadensis HOM05D004851 ORTHO05D006091 8.5e-10 69.3 124 29.0
Lsat_1_v5_gn_3_23200 Lactuca sativa HOM05D004851 ORTHO05D006091 8.5e-10 69.3 124 29.0
MBI07_g19429_MAGBIO Magnolia biondii HOM05D004851 ORTHO05D006091 8.5e-10 69.3 231 25.5
MBI10_g03402_MAGBIO Magnolia biondii HOM05D004851 ORTHO05D006091 8.5e-10 69.3 231 25.5
Hma1.2p1_2196F.1_g316870 Hydrangea macrophylla HOM05D004851 ORTHO05D006091 1.4e-09 68.6 124 29.0
Lj3g0009966 Lotus japonicus HOM05D004851 ORTHO05D006091 1.4e-09 68.6 241 24.5
VMungo0540G0464 Vigna mungo HOM05D004851 ORTHO05D006091 1.4e-09 68.6 124 29.0
Lalb_Chr01g0022101 Lupinus albus HOM05D004851 ORTHO05D006091 1.9e-09 68.2 124 29.8
Oeu010173.1 Olea europaea HOM05D004851 ORTHO05D006091 1.9e-09 68.2 122 30.3
Peaxi162Scf00254g00512 Petunia axillaris HOM05D004851 ORTHO05D006091 1.9e-09 68.2 222 24.3
SalBow1G3109 Salvia bowleyana HOM05D004851 ORTHO05D006091 1.9e-09 68.2 124 28.2
Sopen11g004490 Solanum pennellii HOM05D004851 ORTHO05D006091 1.9e-09 68.2 222 24.3
CSS0035891 Camellia sinensis var. sinensis HOM05D004851 ORTHO05D006091 2.5e-09 67.8 222 24.3
Eucgr.A00913 Eucalyptus grandis HOM05D004851 ORTHO05D006091 2.5e-09 67.8 124 29.8
PGSC0003DMG402016246 Solanum tuberosum HOM05D004851 ORTHO05D006091 2.5e-09 67.8 222 23.9
TAR628G1149 Trochodendron aralioides HOM05D004851 ORTHO05D006091 2.5e-09 67.8 226 24.3
arahy.Tifrunner.gnm1.ann1.UCI1EL Arachis hypogaea HOM05D004851 ORTHO05D006091 3.2e-09 67.4 134 29.1
MSTRG.27417 Avicennia marina HOM05D004851 ORTHO05D006091 3.2e-09 67.4 124 29.8
PSO017G3120 Papaver somniferum HOM05D004851 ORTHO05D006091 3.2e-09 67.4 221 24.0
THA.LOC104823793 Tarenaya hassleriana HOM05D004851 ORTHO05D006091 3.2e-09 67.4 230 23.9
TWI60G1536 Tripterygium wilfordii HOM05D004851 ORTHO05D006091 3.2e-09 67.4 225 24.4
CANSAT01G3202 Cannabis sativa HOM05D004851 ORTHO05D006091 4.2e-09 67.0 213 25.8
Lj3A883T54 Lonicera japonica HOM05D004851 ORTHO05D006091 4.2e-09 67.0 228 25.4
Nitab4.5_0001003g0170 Nicotiana tabacum HOM05D004851 ORTHO05D006091 4.2e-09 67.0 222 25.7
Nitab4.5_0005243g0030 Nicotiana tabacum HOM05D004851 ORTHO05D006091 4.2e-09 67.0 222 25.7
SalBow1G5096 Salvia bowleyana HOM05D004851 ORTHO05D006091 4.2e-09 67.0 171 26.3
Thecc.05G226800 Theobroma cacao HOM05D004851 ORTHO05D006091 4.2e-09 67.0 124 29.0
Aqoxy2G03682 Aquilegia oxysepala HOM05D004851 ORTHO05D006091 5.5e-09 66.6 223 26.0
arahy.Tifrunner.gnm1.ann1.NF9HU2 Arachis hypogaea HOM05D004851 ORTHO05D006091 5.5e-09 66.6 138 28.3
arahy.Tifrunner.gnm1.ann1.VYGS4N Arachis hypogaea HOM05D004851 ORTHO05D006091 5.5e-09 66.6 138 28.3
Cpa.g.sc34.168 Carica papaya HOM05D004851 ORTHO05D006091 5.5e-09 66.6 91 33.0
CDE06G0392 Ceratophyllum demersum HOM05D004851 ORTHO05D006091 5.5e-09 66.6 215 25.6
Duzib128G1329 Durio zibethinus HOM05D004851 ORTHO05D006091 5.5e-09 66.6 223 24.7
CAN.G691.8 Capsicum annuum HOM05D004851 ORTHO05D006091 7.2e-09 66.2 222 23.9
Hma1.2p1_2196F.1_g316860 Hydrangea macrophylla HOM05D004851 ORTHO05D006091 7.2e-09 66.2 226 24.3
unitig_736.g22500 Utricularia gibba HOM05D004851 ORTHO05D006091 7.2e-09 66.2 124 29.8
AUR62028634 Chenopodium quinoa HOM05D004851 ORTHO05D006091 9.4e-09 65.9 124 29.0
CiPaw.06G036900 Carya illinoinensis HOM05D004851 ORTHO05D006091 1.2e-08 65.5 213 23.9
Haze_00352 Corylus avellana HOM05D004851 ORTHO05D006091 1.2e-08 65.5 100 31.0
Phvul.009G105500 Phaseolus vulgaris HOM05D004851 ORTHO05D006091 1.2e-08 65.5 246 23.6
Actinidia08788 Actinidia chinensis HOM05D004851 ORTHO05D006091 1.6e-08 65.1 225 24.9
Glyma.06G081400 Glycine max HOM05D004851 ORTHO05D006091 1.6e-08 65.1 228 24.1
PSO764G0174 Papaver somniferum HOM05D004851 ORTHO05D006091 1.6e-08 65.1 124 25.8
Cfa016106 Carpinus fangiana HOM05D004851 ORTHO05D006091 2.1e-08 64.7 221 24.0
Cfa025590 Carpinus fangiana HOM05D004851 ORTHO05D006091 2.1e-08 64.7 138 29.0
Ciclev10031158m.g Citrus clementina HOM05D004851 ORTHO05D006091 2.1e-08 64.7 213 23.9
COL.COLO4_12970 Corchorus olitorius HOM05D004851 ORTHO05D006091 2.1e-08 64.7 213 23.0
Sc17g0001530 Simmondsia chinensis HOM05D004851 ORTHO05D006091 2.1e-08 64.7 223 24.2
TPR.G37402 Trifolium pratense HOM05D004851 ORTHO05D006091 2.1e-08 64.7 216 23.1
AUR62008058 Chenopodium quinoa HOM05D004851 ORTHO05D006091 2.7e-08 64.3 124 28.2
Cc09_g04170 Coffea canephora HOM05D004851 ORTHO05D006091 2.7e-08 64.3 222 24.3
FAN03G1643 Fragaria x ananassa HOM05D004851 ORTHO05D006091 2.7e-08 64.3 221 22.6
Gohir.A13G158200 Gossypium hirsutum HOM05D004851 ORTHO05D006091 2.7e-08 64.3 213 23.9
FAN10G2942 Fragaria x ananassa HOM05D004851 ORTHO05D006091 3.6e-08 63.9 221 23.1
Manes.08G159500 Manihot esculenta HOM05D004851 ORTHO05D006091 3.6e-08 63.9 237 23.2
GSVIVG01020716001 Vitis vinifera HOM05D004851 ORTHO05D006091 3.6e-08 63.9 226 23.9
FvH4_7g34290 Fragaria vesca HOM05D004851 ORTHO05D006091 4.6e-08 63.5 213 22.5
FAN01G0391 Fragaria x ananassa HOM05D004851 ORTHO05D006091 4.6e-08 63.5 213 22.5
PGR031G1011 Punica granatum HOM05D004851 ORTHO05D006091 4.6e-08 63.5 238 23.5
RcHm_v2.0_Chr1g0384661 Rosa chinensis HOM05D004851 ORTHO05D006091 6.1e-08 63.2 221 23.1
ATR0787G085 Amborella trichopoda HOM05D004851 ORTHO05D006091 7.9e-08 62.8 225 22.2
Dinv29371 Davidia involucrata HOM05D004851 ORTHO05D006091 7.9e-08 62.8 239 24.3
Gohir.D13G162900 Gossypium hirsutum HOM05D004851 ORTHO05D006091 7.9e-08 62.8 213 23.5
Psat7g046360 Pisum sativum HOM05D004851 ORTHO05D006091 7.9e-08 62.8 213 23.5
Prupe.2G329900 Prunus persica HOM05D004851 ORTHO05D006091 7.9e-08 62.8 230 24.8
Sabra13G0065400 Salix brachista HOM05D004851 ORTHO05D006091 7.9e-08 62.8 213 22.1
ClCG02G007800 Citrullus lanatus HOM05D004851 ORTHO05D006091 1.0e-07 62.4 91 29.7
HanXRQChr08g0228141 Helianthus annuus HOM05D004851 ORTHO05D006091 1.0e-07 62.4 213 23.5
Hund21218 Selenicereus undatus HOM05D005621 ORTHO05D007248 1.0e-07 62.4 146 30.8
Atru.chr11.646 Acer truncatum HOM05D004851 ORTHO05D006091 1.4e-07 62.0 209 25.4
Sed0012488 Sechium edule HOM05D004851 ORTHO05D006091 1.8e-07 61.6 223 24.2
EL10Ac8g20402 Beta vulgaris HOM05D005621 ORTHO05D007248 3.0e-07 60.8 130 30.0
MELO3C024747.2 Cucumis melo HOM05D004851 ORTHO05D006091 3.0e-07 60.8 222 22.5
CsaV3_2G035950 Cucumis sativus L. HOM05D004851 ORTHO05D006091 3.9e-07 60.5 222 22.1
MD06G1015700 Malus domestica HOM05D004851 ORTHO05D006091 3.9e-07 60.5 225 24.4
Potri.013G076200 Populus trichocarpa HOM05D004851 ORTHO05D006091 3.9e-07 60.5 269 21.2
Rhsim03G0240200 Rhododendron simsii HOM05D004851 ORTHO05D006091 3.9e-07 60.5 253 24.1
arahy.Tifrunner.gnm1.ann1.BXG275 Arachis hypogaea HOM05D004851 ORTHO05D006091 5.1e-07 60.1 242 22.3
AUR62014837 Chenopodium quinoa HOM05D005621 ORTHO05D007248 5.1e-07 60.1 130 30.0
AUR62017033 Chenopodium quinoa HOM05D005621 ORTHO05D007248 5.1e-07 60.1 130 30.0
Gorai.013G185100 Gossypium raimondii HOM05D004851 ORTHO05D006091 5.1e-07 60.1 199 24.6
Os03g0452300 Oryza sativa ssp. japonica HOM05D005621 ORTHO05D007248 5.1e-07 60.1 166 28.3
Pp3c1_5050 Physcomitrium patens HOM05D005621 ORTHO05D007248 5.1e-07 60.1 234 26.1
SGA_v2.0_scaffold109G31092 Striga asiatica HOM05D005621 ORTHO05D007248 8.8e-07 59.3 146 28.1
Migut.H01481 Erythranthe guttata HOM05D005621 ORTHO05D007248 1.1e-06 58.9 146 28.1
SalBow7G0434 Salvia bowleyana HOM05D005621 ORTHO05D007248 1.1e-06 58.9 146 28.8
SalBow7G3926 Salvia bowleyana HOM05D005621 ORTHO05D007248 1.1e-06 58.9 146 28.8
Ah.09g237450 Amaranthus hybridus HOM05D005621 ORTHO05D007248 1.5e-06 58.5 130 28.5
Ah.14g089540 Amaranthus hybridus HOM05D005621 ORTHO05D007248 1.5e-06 58.5 130 28.5
ATR0217G013 Amborella trichopoda HOM05D005621 ORTHO05D007248 1.5e-06 58.5 146 28.8
AagrBONN_evm.TU.Sc2ySwM_344.1949 Anthoceros agrestis HOM05D005621 ORTHO05D007248 1.5e-06 58.5 146 28.1
Oeu029361.1 Olea europaea HOM05D005621 ORTHO05D007248 1.5e-06 58.5 146 28.1
Sc05g0007560 Simmondsia chinensis HOM05D005621 ORTHO05D007248 1.5e-06 58.5 130 29.2
Pp3c7_18380 Physcomitrium patens HOM05D005621 ORTHO05D007248 2.0e-06 58.2 175 26.9
Aqoxy1G02371 Aquilegia oxysepala HOM05D005621 ORTHO05D007248 2.5e-06 57.8 176 28.4
MSTRG.14706 Avicennia marina HOM05D005621 ORTHO05D007248 3.3e-06 57.4 146 28.8
CDE02G0355 Ceratophyllum demersum HOM05D005621 ORTHO05D007248 3.3e-06 57.4 176 28.4
CDE05G0202 Ceratophyllum demersum HOM05D005621 ORTHO05D007248 3.3e-06 57.4 176 28.4
FAN16G3294 Fragaria x ananassa HOM05D005621 ORTHO05D007248 3.3e-06 57.4 146 28.1
CAN.G529.17 Capsicum annuum HOM05D005621 ORTHO05D007248 4.3e-06 57.0 174 28.2
DCAR_004062 Daucus carota HOM05D005621 ORTHO05D007248 4.3e-06 57.0 146 28.8
Dinv17326 Davidia involucrata HOM05D005621 ORTHO05D007248 4.3e-06 57.0 146 28.8
FAN11G2270 Fragaria x ananassa HOM05D005621 ORTHO05D007248 4.3e-06 57.0 146 28.1
Pp3c11_10680 Physcomitrium patens HOM05D005621 ORTHO05D007248 4.3e-06 57.0 175 26.3
Cc02_g13570 Coffea canephora HOM05D005621 ORTHO05D007248 5.7e-06 56.6 187 28.3
Dinv40577 Davidia involucrata HOM05D005621 ORTHO05D007248 5.7e-06 56.6 146 27.4
Hma1.2p1_0208F.1_g088250 Hydrangea macrophylla HOM05D005621 ORTHO05D007248 5.7e-06 56.6 146 28.1
MBI18_g13183_MAGBIO Magnolia biondii HOM05D005621 ORTHO05D007248 5.7e-06 56.6 146 27.4
Mapoly0008s0189 Marchantia polymorpha HOM05D005621 ORTHO05D007248 5.7e-06 56.6 259 26.3
ECA236G3692 Erigeron canadensis HOM05D005621 ORTHO05D007248 7.4e-06 56.2 146 28.1
Lj2A290T34 Lonicera japonica HOM05D005621 ORTHO05D007248 7.4e-06 56.2 174 27.6
ClCG01G023060 Citrullus lanatus HOM05D005621 ORTHO05D007248 9.7e-06 55.8 177 27.7
Lsat_1_v5_gn_7_21701 Lactuca sativa HOM05D005621 ORTHO05D007248 9.7e-06 55.8 167 27.5


User provided reference genes

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