Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PRCOL_00001907 Prasinoderma coloniale HOM05D003698 ORTHO05D004320 1.9e-141 505.8 247 100.0
Phvul.008G068100 Phaseolus vulgaris HOM05D003698 ORTHO05D004320 2.2e-100 369.4 239 73.2
Glyma.18G229800 Glycine max HOM05D003698 ORTHO05D004320 1.4e-99 366.7 239 72.8
VMungo1383G3090 Vigna mungo HOM05D003698 ORTHO05D004320 1.4e-99 366.7 239 72.8
Cre14.g626900 Chlamydomonas reinhardtii HOM05D003698 ORTHO05D004320 1.8e-99 366.3 247 72.1
Solyc05g048760.3 Solanum lycopersicum HOM05D003698 ORTHO05D004320 5.3e-99 364.8 239 71.1
PGSC0003DMG400021636 Solanum tuberosum HOM05D003698 ORTHO05D004320 5.3e-99 364.8 239 70.7
THA.LOC104827595 Tarenaya hassleriana HOM05D003698 ORTHO05D004320 5.3e-99 364.8 241 72.2
Gorai.008G117900 Gossypium raimondii HOM05D003698 ORTHO05D004320 9.1e-99 364.0 240 72.9
Solyc08g008670.3 Solanum lycopersicum HOM05D003698 ORTHO05D004320 9.1e-99 364.0 239 71.1
Glyma.09G262400 Glycine max HOM05D003698 ORTHO05D004320 1.2e-98 363.6 239 72.0
Sopen05g028080 Solanum pennellii HOM05D003698 ORTHO05D004320 1.2e-98 363.6 239 70.7
Sopen08g004500 Solanum pennellii HOM05D003698 ORTHO05D004320 1.2e-98 363.6 239 71.1
SGA_v2.0_scaffold11G05655 Striga asiatica HOM05D003698 ORTHO05D004320 1.2e-98 363.6 241 72.2
Gohir.A12G104900 Gossypium hirsutum HOM05D003698 ORTHO05D004320 1.6e-98 363.2 240 72.1
Gohir.D08G151400 Gossypium hirsutum HOM05D003698 ORTHO05D004320 1.6e-98 363.2 240 71.7
BcaC01g05105 Brassica carinata HOM05D003698 ORTHO05D004320 2.0e-98 362.8 241 72.2
BolC3t15377H Brassica oleracea HOM05D003698 ORTHO05D004320 2.0e-98 362.8 241 72.2
Os04g0682300 Oryza sativa ssp. japonica HOM05D003698 ORTHO05D004320 2.0e-98 362.8 240 71.7
BcaB01g03252 Brassica carinata HOM05D003698 ORTHO05D004320 2.6e-98 362.5 241 72.2
COL.COLO4_12672 Corchorus olitorius HOM05D003698 ORTHO05D004320 2.6e-98 362.5 240 71.7
Gohir.D12G108800 Gossypium hirsutum HOM05D003698 ORTHO05D004320 2.6e-98 362.5 240 72.5
C03p30280 Brassica napus HOM05D003698 ORTHO05D004320 3.5e-98 362.1 241 72.2
BraA03t11743Z Brassica rapa HOM05D003698 ORTHO05D004320 4.5e-98 361.7 241 72.2
Gorai.004G157100 Gossypium raimondii HOM05D003698 ORTHO05D004320 4.5e-98 361.7 240 71.2
Nitab4.5_0010110g0030 Nicotiana tabacum HOM05D003698 ORTHO05D004320 4.5e-98 361.7 239 71.1
A03p25370 Brassica napus HOM05D003698 ORTHO05D004320 5.9e-98 361.3 241 71.8
BcaB02g09006 Brassica carinata HOM05D003698 ORTHO05D004320 7.7e-98 360.9 241 71.8
Pp3c23_11670 Physcomitrium patens HOM05D003698 ORTHO05D004320 7.7e-98 360.9 240 71.2
arahy.Tifrunner.gnm1.ann1.51RIH8 Arachis hypogaea HOM05D003698 ORTHO05D004320 1.0e-97 360.5 239 71.5
arahy.Tifrunner.gnm1.ann1.L2MSK1 Arachis hypogaea HOM05D003698 ORTHO05D004320 1.0e-97 360.5 239 71.5
unitig_22.g6808 Utricularia gibba HOM05D003698 ORTHO05D004320 1.7e-97 359.8 241 71.4
CiPaw.01G057600 Carya illinoinensis HOM05D003698 ORTHO05D004320 2.2e-97 359.4 240 70.8
Medtr7g076670 Medicago truncatula HOM05D003698 ORTHO05D004320 2.9e-97 359.0 239 70.3
Manes.01G259900 Manihot esculenta HOM05D003698 ORTHO05D004320 3.8e-97 358.6 240 70.8
Zm00001eb065790 Zea mays HOM05D003698 ORTHO05D004320 3.8e-97 358.6 240 70.0
CSS0014093 Camellia sinensis var. sinensis HOM05D003698 ORTHO05D004320 5.0e-97 358.2 240 71.2
Dinv43781 Davidia involucrata HOM05D003698 ORTHO05D004320 5.0e-97 358.2 240 70.0
Gohir.A08G129900 Gossypium hirsutum HOM05D003698 ORTHO05D004320 5.0e-97 358.2 240 70.8
Manes.05G037500 Manihot esculenta HOM05D003698 ORTHO05D004320 5.0e-97 358.2 240 70.0
Nitab4.5_0010827g0020 Nicotiana tabacum HOM05D003698 ORTHO05D004320 5.0e-97 358.2 239 71.1
Thecc.01G363600 Theobroma cacao HOM05D003698 ORTHO05D004320 5.0e-97 358.2 239 71.1
CANSAT56G2897 Cannabis sativa HOM05D003698 ORTHO05D004320 6.5e-97 357.8 241 69.3
FAN01G1997 Fragaria x ananassa HOM05D003698 ORTHO05D004320 6.5e-97 357.8 240 70.8
FAN06G0259 Fragaria x ananassa HOM05D003698 ORTHO05D004320 6.5e-97 357.8 240 70.8
RcHm_v2.0_Chr1g0353671 Rosa chinensis HOM05D003698 ORTHO05D004320 6.5e-97 357.8 240 70.8
SMO367G1007 Selaginella moellendorffii HOM05D003698 ORTHO05D004320 6.5e-97 357.8 240 71.2
BcaC02g12181 Brassica carinata HOM05D003698 ORTHO05D004320 8.5e-97 357.5 241 71.4
C04p06720 Brassica napus HOM05D003698 ORTHO05D004320 8.5e-97 357.5 241 71.4
BolC4t22293H Brassica oleracea HOM05D003698 ORTHO05D004320 8.5e-97 357.5 241 71.4
FvH4_7g13630 Fragaria vesca HOM05D003698 ORTHO05D004320 8.5e-97 357.5 240 70.8
Lj1g0021860 Lotus japonicus HOM05D003698 ORTHO05D004320 8.5e-97 357.5 239 70.7
AL4G44990 Arabidopsis lyrata HOM05D003698 ORTHO05D004320 1.1e-96 357.1 241 70.5
CARHR141060 Cardamine hirsuta HOM05D003698 ORTHO05D004320 1.1e-96 357.1 241 70.5
A05p05780 Brassica napus HOM05D003698 ORTHO05D004320 1.5e-96 356.7 241 71.4
BraA05t19544Z Brassica rapa HOM05D003698 ORTHO05D004320 1.5e-96 356.7 241 71.4
SalBow5G4069 Salvia bowleyana HOM05D003698 ORTHO05D004320 1.5e-96 356.7 241 69.3
Cc02_g37580 Coffea canephora HOM05D003698 ORTHO05D004320 1.9e-96 356.3 249 70.3
Duzib133G0563 Durio zibethinus HOM05D003698 ORTHO05D004320 1.9e-96 356.3 240 70.4
Peaxi162Scf00397g00424 Petunia axillaris HOM05D003698 ORTHO05D004320 1.9e-96 356.3 239 71.5
Potri.014G080500 Populus trichocarpa HOM05D003698 ORTHO05D004320 1.9e-96 356.3 241 69.7
Nitab4.5_0001702g0210 Nicotiana tabacum HOM05D003698 ORTHO05D004320 2.5e-96 355.9 239 70.7
AT2G45790 Arabidopsis thaliana HOM05D003698 ORTHO05D004320 4.2e-96 355.1 241 70.5
Prupe.2G162400 Prunus persica HOM05D003698 ORTHO05D004320 4.2e-96 355.1 240 70.8
PGR042G0708 Punica granatum HOM05D003698 ORTHO05D004320 4.2e-96 355.1 241 70.5
Carub.0004s2849 Capsella rubella HOM05D003698 ORTHO05D004320 5.5e-96 354.8 241 70.5
Ca_07888_v3 Cicer arietinum L. HOM05D003698 ORTHO05D004320 7.2e-96 354.4 239 68.6
THA.LOC104817282 Tarenaya hassleriana HOM05D003698 ORTHO05D004320 7.2e-96 354.4 241 70.5
Sp4g27860 Schrenkiella parvula HOM05D003698 ORTHO05D004320 9.4e-96 354.0 241 70.1
Aa31LG1G27240 Aethionema arabicum HOM05D003698 ORTHO05D004320 1.2e-95 353.6 241 70.5
CDE05G2621 Ceratophyllum demersum HOM05D003698 ORTHO05D004320 1.2e-95 353.6 240 70.4
TWI14G1008 Tripterygium wilfordii HOM05D003698 ORTHO05D004320 1.2e-95 353.6 240 70.0
Dinv32446 Davidia involucrata HOM05D003698 ORTHO05D004320 1.6e-95 353.2 239 70.7
Thhalv10001604m.g Eutrema salsugineum HOM05D003698 ORTHO05D004320 1.6e-95 353.2 241 70.5
TWI59G0439 Tripterygium wilfordii HOM05D003698 ORTHO05D004320 1.6e-95 353.2 240 70.0
MSTRG.4868 Avicennia marina HOM05D003698 ORTHO05D004320 2.1e-95 352.8 241 70.5
TWI59G0409 Tripterygium wilfordii HOM05D003698 ORTHO05D004320 2.1e-95 352.8 239 70.7
GSVIVG01026838001 Vitis vinifera HOM05D003698 ORTHO05D004320 2.1e-95 352.8 240 70.0
PGR044G0179 Punica granatum HOM05D003698 ORTHO05D004320 2.7e-95 352.4 240 70.4
Cfa003959 Carpinus fangiana HOM05D003698 ORTHO05D004320 3.6e-95 352.1 240 69.2
Dinv43783 Davidia involucrata HOM05D003698 ORTHO05D004320 4.7e-95 351.7 240 68.8
Mapoly0004s0121 Marchantia polymorpha HOM05D003698 ORTHO05D004320 4.7e-95 351.7 239 71.1
Nn1g01429 Nelumbo nucifera HOM05D003698 ORTHO05D004320 4.7e-95 351.7 247 68.4
BraA04t18865Z Brassica rapa HOM05D003698 ORTHO05D004320 6.1e-95 351.3 241 69.7
Eucgr.E00182 Eucalyptus grandis HOM05D003698 ORTHO05D004320 6.1e-95 351.3 241 70.1
MD01G1053400 Malus domestica HOM05D003698 ORTHO05D004320 6.1e-95 351.3 240 69.6
PGSC0003DMG400013702 Solanum tuberosum HOM05D003698 ORTHO05D004320 6.1e-95 351.3 240 68.8
ATR0680G146 Amborella trichopoda HOM05D003698 ORTHO05D004320 1.0e-94 350.5 239 69.9
CDE08G1212 Ceratophyllum demersum HOM05D003698 ORTHO05D004320 1.0e-94 350.5 240 70.0
Psat3g111000 Pisum sativum HOM05D003698 ORTHO05D004320 1.0e-94 350.5 239 69.0
Actinidia09997 Actinidia chinensis HOM05D003698 ORTHO05D004320 1.4e-94 350.1 240 69.2
Aqoxy7G00375 Aquilegia oxysepala HOM05D003698 ORTHO05D004320 2.3e-94 349.4 240 69.6
CBR_g41657 Chara braunii HOM05D003698 ORTHO05D004320 3.0e-94 349.0 246 67.1
TAR629G2702 Trochodendron aralioides HOM05D003698 ORTHO05D004320 3.0e-94 349.0 249 68.3
A04p34040 Brassica napus HOM05D003698 ORTHO05D004320 4.0e-94 348.6 241 69.3
HanXRQChr06g0169891 Helianthus annuus HOM05D003698 ORTHO05D004320 4.0e-94 348.6 239 67.8
Hma1.2p1_0033F.1_g020410 Hydrangea macrophylla HOM05D003698 ORTHO05D004320 4.0e-94 348.6 240 68.8
Lalb_Chr04g0256721 Lupinus albus HOM05D003698 ORTHO05D004320 5.2e-94 348.2 240 68.8
PSO478G0134 Papaver somniferum HOM05D003698 ORTHO05D004320 5.2e-94 348.2 240 67.9
BcaC02g07054 Brassica carinata HOM05D003698 ORTHO05D004320 8.8e-94 347.4 241 69.7
CBR_g44345 Chara braunii HOM05D003698 ORTHO05D004320 1.2e-93 347.1 246 66.7
Oeu014677.1 Olea europaea HOM05D003698 ORTHO05D004320 1.2e-93 347.1 240 68.3
Hund16943 Selenicereus undatus HOM05D003698 ORTHO05D004320 1.5e-93 346.7 240 68.3
Sc02g0002070 Simmondsia chinensis HOM05D003698 ORTHO05D004320 2.0e-93 346.3 240 68.3
Solyc05g046340.2 Solanum lycopersicum HOM05D003698 ORTHO05D004320 2.0e-93 346.3 238 68.5
BolC4t28682H Brassica oleracea HOM05D003698 ORTHO05D004320 2.6e-93 345.9 241 68.9
PSO782G3808 Papaver somniferum HOM05D003698 ORTHO05D004320 2.6e-93 345.9 240 67.5
C04p71840 Brassica napus HOM05D003698 ORTHO05D004320 4.4e-93 345.1 239 68.6
Potri.014G080300 Populus trichocarpa HOM05D003698 ORTHO05D004320 4.4e-93 345.1 241 68.0
Rhsim07G0018200 Rhododendron simsii HOM05D003698 ORTHO05D004320 7.5e-93 344.4 240 67.9
ClCG11G000500 Citrullus lanatus HOM05D003698 ORTHO05D004320 1.3e-92 343.6 238 69.7
MELO3C026482.2 Cucumis melo HOM05D003698 ORTHO05D004320 1.3e-92 343.6 238 69.3
Sed0025976 Sechium edule HOM05D003698 ORTHO05D004320 1.7e-92 343.2 238 68.5
ECA236G4925 Erigeron canadensis HOM05D003698 ORTHO05D004320 2.8e-92 342.4 240 67.1
QL08p049567 Quercus lobata HOM05D003698 ORTHO05D004320 2.8e-92 342.4 240 66.7
MD07G1141700 Malus domestica HOM05D003698 ORTHO05D004320 4.8e-92 341.7 240 68.3
vmacro20957 Vaccinium macrocarpon HOM05D003698 ORTHO05D004320 4.8e-92 341.7 279 60.9
MBI18_g09776_MAGBIO Magnolia biondii HOM05D003698 ORTHO05D004320 1.4e-91 340.1 287 61.0
Sabra14G0058400 Salix brachista HOM05D003698 ORTHO05D004320 1.4e-91 340.1 242 67.8
arahy.Tifrunner.gnm1.ann1.0R79PA Arachis hypogaea HOM05D003698 ORTHO05D004320 1.8e-91 339.7 222 72.1
FAN10G2510 Fragaria x ananassa HOM05D004612 ORTHO05D004940 5.4e-91 338.2 225 71.6
SGA_v2.0_scaffold43G16443 Striga asiatica HOM05D003698 ORTHO05D004320 1.6e-90 336.7 230 70.9
Peaxi162Scf00246g01118 Petunia axillaris HOM05D003698 ORTHO05D004320 7.7e-90 334.3 239 67.8
AUR62036720 Chenopodium quinoa HOM05D003698 ORTHO05D004320 1.0e-89 334.0 240 66.2
Atru.chr5.444 Acer truncatum HOM05D003698 ORTHO05D004320 6.5e-89 331.3 223 70.0
Ciclev10024269m.g Citrus clementina HOM05D003698 ORTHO05D004320 6.5e-89 331.3 273 60.8
CSS0025539 Camellia sinensis var. sinensis HOM05D003698 ORTHO05D004320 1.5e-88 330.1 220 70.9
CiPaw.02G028200 Carya illinoinensis HOM05D003698 ORTHO05D004320 3.2e-88 328.9 241 66.8
CsaV3_5G014110 Cucumis sativus L. HOM05D003698 ORTHO05D004320 7.2e-88 327.8 233 68.2
HanXRQChr04g0121661 Helianthus annuus HOM05D003698 ORTHO05D004320 2.7e-87 325.9 222 67.6
MCO01G022 Micromonas commoda HOM05D003698 ORTHO05D004320 1.8e-86 323.2 235 64.7
Ah.13g077050 Amaranthus hybridus HOM05D003698 ORTHO05D004320 4.0e-86 322.0 265 60.4
Oeu014681.1 Olea europaea HOM05D003698 ORTHO05D004320 6.8e-86 321.2 224 67.9
Sopen05g027620 Solanum pennellii HOM05D003698 ORTHO05D004320 1.5e-85 320.1 240 64.2
CSS0039842 Camellia sinensis var. sinensis HOM05D003698 ORTHO05D004320 3.4e-85 318.9 244 64.8
CBR_g4022 Chara braunii HOM05D003698 ORTHO05D004320 1.3e-84 317.0 240 60.4
SHI30460 Sapria himalayana HOM05D003698 ORTHO05D004320 1.3e-84 317.0 224 67.0
TWI59G0950 Tripterygium wilfordii HOM05D003698 ORTHO05D004320 1.8e-83 313.2 206 72.8
PGSC0003DMG400005806 Solanum tuberosum HOM05D003698 ORTHO05D004320 2.7e-82 309.3 223 66.4
AagrBONN_evm.TU.Sc2ySwM_117.907 Anthoceros agrestis HOM05D003698 ORTHO05D004320 1.0e-81 307.4 206 71.4
SalBow5G5099 Salvia bowleyana HOM05D003698 ORTHO05D004320 1.7e-81 306.6 206 69.9
Lj7A516T66 Lonicera japonica HOM05D003698 ORTHO05D004320 2.9e-81 305.8 222 66.7
Lsat_1_v5_gn_7_5261 Lactuca sativa HOM05D003698 ORTHO05D004320 1.9e-80 303.1 240 60.4
Cfa027079 Carpinus fangiana HOM05D003698 ORTHO05D004320 2.5e-80 302.8 248 58.1
EL10Ac1g02076 Beta vulgaris HOM05D003698 ORTHO05D004320 8.9e-78 294.3 346 46.5
DCAR_008599 Daucus carota HOM05D003698 ORTHO05D004320 2.0e-77 293.1 204 67.2
Migut.N01427 Erythranthe guttata HOM05D003698 ORTHO05D004320 1.7e-76 290.0 186 73.1
CAN.G134.78 Capsicum annuum HOM05D003698 ORTHO05D004320 2.4e-75 286.2 202 65.8
Eucgr.E00184 Eucalyptus grandis HOM05D003698 ORTHO05D004320 3.5e-74 282.3 185 71.4
EL10Ac7g16340 Beta vulgaris HOM05D003698 ORTHO05D004320 2.1e-71 273.1 224 60.3
MSTRG.28213 Avicennia marina HOM05D003698 ORTHO05D004320 9.8e-69 264.2 175 72.6
RhsimUnG0002300 Rhododendron simsii HOM05D003698 ORTHO05D004320 1.3e-68 263.8 308 49.0
Haze_24893 Corylus avellana HOM05D003698 ORTHO05D004320 8.9e-62 241.1 206 59.7
Nn6g33536 Nelumbo nucifera HOM05D003698 ORTHO05D004320 1.2e-61 240.7 233 55.4
SEGI_40114 Sequoiadendron giganteum HOM05D003698 ORTHO05D004320 3.4e-61 239.2 162 70.4
Haze_15453 Corylus avellana HOM05D003698 ORTHO05D004320 4.9e-60 235.3 155 69.7
FAN06G0644 Fragaria x ananassa HOM05D003698 ORTHO05D004320 2.7e-58 229.6 142 76.1
Cpa.g.sc170.35 Carica papaya HOM05D003698 ORTHO05D004320 6.0e-58 228.4 152 69.1
Lj9A580G54 Lonicera japonica HOM05D003698 ORTHO05D004320 6.0e-58 228.4 152 67.8
HPP92_000764 Vanilla planifolia HOM05D003698 ORTHO05D004320 1.1e-51 207.6 216 52.3
AUR62013874 Chenopodium quinoa HOM05D003698 ORTHO05D004320 3.2e-51 206.1 147 65.3
CSS0016921 Camellia sinensis var. sinensis HOM05D003698 ORTHO05D004320 2.1e-50 203.4 135 69.6
Haze_05811 Corylus avellana HOM05D003698 ORTHO05D004320 8.1e-47 191.4 154 59.1
CSS0047600 Camellia sinensis var. sinensis HOM05D003698 ORTHO05D004320 6.4e-44 181.8 174 54.6
FAN03G0966 Fragaria x ananassa HOM05D003698 ORTHO05D004320 2.7e-42 176.4 122 67.2
Cpa.g.c40434 Carica papaya HOM05D003698 ORTHO05D004320 2.6e-37 159.8 108 70.4
Cpa.g.c46781 Carica papaya HOM05D003698 ORTHO05D004320 3.8e-36 156.0 94 77.7
RcHm_v2.0_Chr1g0364561 Rosa chinensis HOM05D003698 ORTHO05D004320 3.0e-33 146.4 87 77.0
TPR.G40455 Trifolium pratense HOM05D003698 ORTHO05D004320 1.6e-26 124.0 78 75.6
Prupe.8G033900 Prunus persica HOM05D003698 ORTHO05D004320 1.0e-25 121.3 91 60.4
MBI17_g19515_MAGBIO Magnolia biondii HOM05D003698 ORTHO05D004320 1.9e-24 117.1 90 65.6
Solyc08g076550.3 Solanum lycopersicum HOM05D005023 ORTHO05D006009 1.1e-19 101.3 73 60.3
RcHm_v2.0_Chr4g0404481 Rosa chinensis HOM05D003698 ORTHO05D004320 7.1e-19 98.6 89 57.3
CANSAT25G0181 Cannabis sativa HOM05D003698 ORTHO05D004320 1.0e-17 94.7 70 60.0
TPR.G18261 Trifolium pratense HOM05D003698 ORTHO05D004320 5.1e-17 92.4 78 61.5
RcHm_v2.0_Chr5g0045001 Rosa chinensis HOM05D003698 ORTHO05D004320 7.4e-16 88.6 155 41.9
CAN.G134.80 Capsicum annuum HOM05D003698 ORTHO05D004320 1.1e-14 84.7 54 75.9
Haze_05812 Corylus avellana HOM05D003698 ORTHO05D004320 4.6e-10 69.3 49 67.3
Hund27303 Selenicereus undatus HOM05D000402 ORTHO05D000263 3.9e-09 66.2 37 81.1
CANSAT11G2537 Cannabis sativa HOM05D003698 ORTHO05D004320 1.5e-08 64.3 45 60.0
TAR636G2570 Trochodendron aralioides HOM05D003698 ORTHO05D004320 1.3e-07 61.2 60 53.3
PGR044G1122 Punica granatum HOM05D003698 ORTHO05D004320 2.2e-07 60.5 108 37.0
Solyc08g076560.1 Solanum lycopersicum HOM05D003698 ORTHO05D391923 3.7e-07 59.7 39 66.7


User provided reference genes

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