Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PRCOL_00001807 Prasinoderma coloniale HOM05D005492 ORTHO05D006911 6.2e-99 364.0 167 100.0
Pp3c16_2350 Physcomitrium patens HOM05D005492 ORTHO05D006911 6.6e-77 290.8 165 75.2
SEGI_29138 Sequoiadendron giganteum HOM05D005492 ORTHO05D006911 9.6e-76 287.0 165 72.1
Sed0023469 Sechium edule HOM05D005492 ORTHO05D006911 1.6e-75 286.2 165 73.9
Ah.00g000130 Amaranthus hybridus HOM05D005492 ORTHO05D006911 2.8e-75 285.4 165 73.9
CBR_g37394 Chara braunii HOM05D005492 ORTHO05D006911 2.8e-75 285.4 165 74.5
CsaV3_3G048290 Cucumis sativus L. HOM05D005492 ORTHO05D006911 3.6e-75 285.0 165 72.7
Mapoly0013s0107 Marchantia polymorpha HOM05D005492 ORTHO05D006911 3.6e-75 285.0 165 73.3
SGA_v2.0_scaffold28G11869 Striga asiatica HOM05D005492 ORTHO05D006911 3.6e-75 285.0 165 73.3
THA.LOC104800327 Tarenaya hassleriana HOM05D005492 ORTHO05D006911 4.7e-75 284.6 165 72.7
AL1G40960 Arabidopsis lyrata HOM05D005492 ORTHO05D006911 6.2e-75 284.3 165 72.1
AT1G27530 Arabidopsis thaliana HOM05D005492 ORTHO05D006911 6.2e-75 284.3 165 72.1
Duzib116G0911 Durio zibethinus HOM05D005492 ORTHO05D006911 6.2e-75 284.3 165 72.7
Gohir.A05G264075 Gossypium hirsutum HOM05D005492 ORTHO05D006911 6.2e-75 284.3 165 73.3
Gohir.D05G266500 Gossypium hirsutum HOM05D005492 ORTHO05D006911 6.2e-75 284.3 165 73.3
Gorai.009G278400 Gossypium raimondii HOM05D005492 ORTHO05D006911 6.2e-75 284.3 165 73.3
CANSAT35G2015 Cannabis sativa HOM05D005492 ORTHO05D006911 1.1e-74 283.5 165 72.1
Cpa.g.sc160.3 Carica papaya HOM05D005492 ORTHO05D006911 1.1e-74 283.5 165 72.1
COL.COLO4_35339 Corchorus olitorius HOM05D005492 ORTHO05D006911 1.1e-74 283.5 165 72.7
Duzib041G0144 Durio zibethinus HOM05D005492 ORTHO05D006911 1.1e-74 283.5 165 72.7
HanXRQChr01g0001771 Helianthus annuus HOM05D005492 ORTHO05D006911 1.1e-74 283.5 165 73.3
Gohir.A06G029400 Gossypium hirsutum HOM05D005492 ORTHO05D006911 1.4e-74 283.1 165 72.7
Gohir.D06G028400 Gossypium hirsutum HOM05D005492 ORTHO05D006911 1.4e-74 283.1 165 72.7
Solyc04g076890.4 Solanum lycopersicum HOM05D005492 ORTHO05D006911 1.4e-74 283.1 165 72.7
Sopen04g030660 Solanum pennellii HOM05D005492 ORTHO05D006911 1.4e-74 283.1 165 72.7
PGSC0003DMG400006380 Solanum tuberosum HOM05D005492 ORTHO05D006911 1.4e-74 283.1 165 72.7
C07p17680 Brassica napus HOM05D005492 ORTHO05D006911 1.8e-74 282.7 165 72.1
BolC3t19680H Brassica oleracea HOM05D005492 ORTHO05D006911 1.8e-74 282.7 165 72.1
CAN.G723.31 Capsicum annuum HOM05D005492 ORTHO05D006911 1.8e-74 282.7 165 72.7
Carub.0001s2610 Capsella rubella HOM05D005492 ORTHO05D006911 2.4e-74 282.3 165 71.5
CARHR027130 Cardamine hirsuta HOM05D005492 ORTHO05D006911 2.4e-74 282.3 165 71.5
CiPaw.15G151700 Carya illinoinensis HOM05D005492 ORTHO05D006911 2.4e-74 282.3 165 71.5
Thhalv10008910m.g Eutrema salsugineum HOM05D005492 ORTHO05D006911 2.4e-74 282.3 165 71.5
Glyma.06G091400 Glycine max HOM05D005492 ORTHO05D006911 2.4e-74 282.3 165 72.1
Gorai.010G031300 Gossypium raimondii HOM05D005492 ORTHO05D006911 2.4e-74 282.3 165 72.7
Lsat_1_v5_gn_9_81101 Lactuca sativa HOM05D005492 ORTHO05D006911 2.4e-74 282.3 165 72.7
MD08G1209200 Malus domestica HOM05D005492 ORTHO05D006911 2.4e-74 282.3 165 71.5
Oeu026363.1 Olea europaea HOM05D005492 ORTHO05D006911 2.4e-74 282.3 165 72.1
PGR083G0175 Punica granatum HOM05D005492 ORTHO05D006911 2.4e-74 282.3 165 71.5
Thecc.08G078100 Theobroma cacao HOM05D005492 ORTHO05D006911 2.4e-74 282.3 165 72.1
GSVIVG01009242001 Vitis vinifera HOM05D005492 ORTHO05D006911 3.1e-74 282.0 165 71.5
BcaB03g13980 Brassica carinata HOM05D005492 ORTHO05D006911 4.0e-74 281.6 165 70.9
BcaC06g35300 Brassica carinata HOM05D005492 ORTHO05D006911 4.0e-74 281.6 165 71.5
A07p11710 Brassica napus HOM05D005492 ORTHO05D006911 4.0e-74 281.6 165 71.5
A08p26210 Brassica napus HOM05D005492 ORTHO05D006911 4.0e-74 281.6 165 71.5
C03p74220 Brassica napus HOM05D005492 ORTHO05D006911 4.0e-74 281.6 165 71.5
BolC7t42275H Brassica oleracea HOM05D005492 ORTHO05D006911 4.0e-74 281.6 165 71.5
BraA07t28956Z Brassica rapa HOM05D005492 ORTHO05D006911 4.0e-74 281.6 165 71.5
BraA08t34572Z Brassica rapa HOM05D005492 ORTHO05D006911 4.0e-74 281.6 165 71.5
Duzib041G0066 Durio zibethinus HOM05D005492 ORTHO05D006911 4.0e-74 281.6 165 72.1
Potri.002G107600 Populus trichocarpa HOM05D005492 ORTHO05D006911 4.0e-74 281.6 165 72.1
Prupe.1G541400 Prunus persica HOM05D005492 ORTHO05D006911 4.0e-74 281.6 165 72.1
RcHm_v2.0_Chr7g0232851 Rosa chinensis HOM05D005492 ORTHO05D006911 4.0e-74 281.6 165 71.5
Sabra02G0084500 Salix brachista HOM05D005492 ORTHO05D006911 4.0e-74 281.6 165 72.1
TWI12G1341 Tripterygium wilfordii HOM05D005492 ORTHO05D006911 4.0e-74 281.6 165 71.5
BcaC01g06944 Brassica carinata HOM05D005492 ORTHO05D006911 5.2e-74 281.2 165 70.9
Nitab4.5_0000377g0170 Nicotiana tabacum HOM05D005492 ORTHO05D006911 5.2e-74 281.2 165 72.7
Nitab4.5_0005557g0040 Nicotiana tabacum HOM05D005492 ORTHO05D006911 5.2e-74 281.2 165 72.7
PSO210G2227 Papaver somniferum HOM05D005492 ORTHO05D006911 5.2e-74 281.2 165 72.7
PSO761G0095 Papaver somniferum HOM05D005492 ORTHO05D006911 5.2e-74 281.2 165 72.7
QL12p040192 Quercus lobata HOM05D005492 ORTHO05D006911 5.2e-74 281.2 165 70.9
Sp1g23790 Schrenkiella parvula HOM05D005492 ORTHO05D006911 5.2e-74 281.2 165 70.9
Cfa020694 Carpinus fangiana HOM05D005492 ORTHO05D006911 6.9e-74 280.8 165 71.5
Haze_18999 Corylus avellana HOM05D005492 ORTHO05D006911 6.9e-74 280.8 165 71.5
arahy.Tifrunner.gnm1.ann1.7IN1UY Arachis hypogaea HOM05D005492 ORTHO05D006911 9.0e-74 280.4 165 71.5
arahy.Tifrunner.gnm1.ann1.EMS59G Arachis hypogaea HOM05D005492 ORTHO05D006911 9.0e-74 280.4 165 71.5
BcaC01g01601 Brassica carinata HOM05D005492 ORTHO05D006911 9.0e-74 280.4 165 71.5
Ciclev10002666m.g Citrus clementina HOM05D005492 ORTHO05D006911 9.0e-74 280.4 165 71.5
AUR62035408 Chenopodium quinoa HOM05D005492 ORTHO05D006911 1.2e-73 280.0 165 72.7
AUR62035696 Chenopodium quinoa HOM05D005492 ORTHO05D006911 1.2e-73 280.0 165 72.7
ECA232G4293 Erigeron canadensis HOM05D005492 ORTHO05D006911 1.2e-73 280.0 165 71.5
MD15G1393200 Malus domestica HOM05D005492 ORTHO05D006911 1.2e-73 280.0 165 70.9
TWI32G1091 Tripterygium wilfordii HOM05D005492 ORTHO05D006911 1.2e-73 280.0 165 70.3
Aa31LG7G10120 Aethionema arabicum HOM05D005492 ORTHO05D006911 1.5e-73 279.6 165 70.9
Ca_15548_v3 Cicer arietinum L. HOM05D005492 ORTHO05D006911 1.5e-73 279.6 165 70.3
Eucgr.F00462 Eucalyptus grandis HOM05D005492 ORTHO05D006911 1.5e-73 279.6 165 71.5
MSTRG.24417 Avicennia marina HOM05D005492 ORTHO05D006911 2.0e-73 279.3 165 71.5
BcaC05g26754 Brassica carinata HOM05D005492 ORTHO05D006911 2.0e-73 279.3 165 70.9
Lj1g0026792 Lotus japonicus HOM05D005492 ORTHO05D006911 2.0e-73 279.3 165 70.9
Oeu002945.1 Olea europaea HOM05D005492 ORTHO05D006911 2.0e-73 279.3 165 71.5
vmacro21373 Vaccinium macrocarpon HOM05D005492 ORTHO05D006911 2.0e-73 279.3 165 70.9
Manes.18G054601 Manihot esculenta HOM05D005492 ORTHO05D006911 2.6e-73 278.9 165 70.9
CSS0048416 Camellia sinensis var. sinensis HOM05D005492 ORTHO05D006911 3.4e-73 278.5 165 69.7
VMungo1309G2191 Vigna mungo HOM05D005492 ORTHO05D006911 3.4e-73 278.5 165 70.9
Dinv44895 Davidia involucrata HOM05D005492 ORTHO05D006911 4.4e-73 278.1 165 69.7
FAN08G0693 Fragaria x ananassa HOM05D005492 ORTHO05D006911 4.4e-73 278.1 165 70.3
FAN18G0360 Fragaria x ananassa HOM05D005492 ORTHO05D006911 4.4e-73 278.1 165 70.3
vmacro04619 Vaccinium macrocarpon HOM05D005492 ORTHO05D006911 4.4e-73 278.1 165 69.1
Migut.N02829 Erythranthe guttata HOM05D005492 ORTHO05D006911 5.8e-73 277.7 165 70.9
Migut.O00437 Erythranthe guttata HOM05D005492 ORTHO05D006911 5.8e-73 277.7 165 70.9
Lj4A81T75 Lonicera japonica HOM05D005492 ORTHO05D006911 5.8e-73 277.7 165 70.3
FAN04G2818 Fragaria x ananassa HOM05D005492 ORTHO05D006911 7.6e-73 277.3 165 69.7
Glyma.04G089600 Glycine max HOM05D005492 ORTHO05D006911 7.6e-73 277.3 165 70.9
Psat5g017920 Pisum sativum HOM05D005492 ORTHO05D006911 7.6e-73 277.3 165 70.9
Lalb_Chr08g0242711 Lupinus albus HOM05D005492 ORTHO05D006911 9.9e-73 276.9 165 70.3
Medtr3g111110 Medicago truncatula HOM05D005492 ORTHO05D006911 9.9e-73 276.9 165 70.3
Dinv22020 Davidia involucrata HOM05D005492 ORTHO05D006911 2.2e-72 275.8 165 69.7
Hma1.2p1_1548F.1_g290020 Hydrangea macrophylla HOM05D005492 ORTHO05D006911 2.2e-72 275.8 165 69.1
unitig_8.g4867 Utricularia gibba HOM05D002193 ORTHO05D002631 2.9e-72 275.4 165 68.5
CDE04G0412 Ceratophyllum demersum HOM05D005492 ORTHO05D006911 3.8e-72 275.0 165 68.5
Sc02g0008380 Simmondsia chinensis HOM05D005492 ORTHO05D006911 3.8e-72 275.0 165 70.3
TAR628G0115 Trochodendron aralioides HOM05D005492 ORTHO05D006911 3.8e-72 275.0 165 69.1
Aqoxy5G01947 Aquilegia oxysepala HOM05D005492 ORTHO05D006911 4.9e-72 274.6 165 70.3
Cc10_g08150 Coffea canephora HOM05D005492 ORTHO05D006911 4.9e-72 274.6 165 70.9
TPR.G12370 Trifolium pratense HOM05D005492 ORTHO05D006911 4.9e-72 274.6 165 69.7
Actinidia10257 Actinidia chinensis HOM05D005492 ORTHO05D006911 8.4e-72 273.9 165 69.7
MBI16_g26726_MAGBIO Magnolia biondii HOM05D005492 ORTHO05D006911 1.4e-71 273.1 165 67.9
Actinidia19266 Actinidia chinensis HOM05D005492 ORTHO05D006911 2.4e-71 272.3 165 68.5
MSTRG.22188 Avicennia marina HOM05D005492 ORTHO05D006911 3.2e-71 271.9 165 71.5
Cre02.g142350 Chlamydomonas reinhardtii HOM05D005492 ORTHO05D006911 5.4e-71 271.2 164 69.5
Rhsim07G0214900 Rhododendron simsii HOM05D005492 ORTHO05D006911 1.6e-70 269.6 165 67.3
Atru.BG.248.p Acer truncatum HOM05D005492 ORTHO05D006911 1.7e-69 266.2 165 69.7
Os10g0205200 Oryza sativa ssp. japonica HOM05D005492 ORTHO05D006911 6.6e-69 264.2 165 66.1
HPP92_010753 Vanilla planifolia HOM05D005492 ORTHO05D006911 8.7e-69 263.8 165 66.1
Zm00001eb010950 Zea mays HOM05D005492 ORTHO05D006911 1.1e-68 263.5 165 65.5
TAR381G0934 Trochodendron aralioides HOM05D005492 ORTHO05D006911 1.5e-68 263.1 165 67.9
ATR0767G107 Amborella trichopoda HOM05D005492 ORTHO05D006911 1.9e-68 262.7 163 66.9
Hund05232 Selenicereus undatus HOM05D005492 ORTHO05D006911 9.9e-65 250.4 234 51.3
ClCG11G014860 Citrullus lanatus HOM05D005492 ORTHO05D006911 6.4e-64 247.7 140 74.3
Peaxi162Scf00626g00718 Petunia axillaris HOM05D005492 ORTHO05D006911 1.7e-56 223.0 171 59.6
Phvul.009G146200 Phaseolus vulgaris HOM05D005492 ORTHO05D006911 3.8e-56 221.9 131 70.2
DCAR_009548 Daucus carota HOM05D005492 ORTHO05D006911 5.5e-55 218.0 131 69.5
TAR381G1662 Trochodendron aralioides HOM05D005492 ORTHO05D006911 2.1e-54 216.1 131 67.9
Cfa015905 Carpinus fangiana HOM05D005492 ORTHO05D000088 2.7e-54 215.7 164 60.4
Haze_27628 Corylus avellana HOM05D005492 ORTHO05D006911 5.6e-52 208.0 165 55.2
Atru.chr13.934 Acer truncatum HOM05D005492 ORTHO05D006911 1.1e-47 193.7 125 65.6
Duzib093G0511 Durio zibethinus HOM05D005492 ORTHO05D006911 6.0e-46 188.0 108 74.1
MELO3C003490.2 Cucumis melo HOM05D005492 ORTHO05D006911 2.3e-45 186.0 124 63.7
AagrBONN_evm.TU.Sc2ySwM_369.477 Anthoceros agrestis HOM05D005492 ORTHO05D006911 4.3e-44 181.8 112 67.0
FvH4_5g33720 Fragaria vesca HOM05D005492 ORTHO05D006911 1.1e-42 177.2 112 65.2
THA.LOC104807850 Tarenaya hassleriana HOM05D005492 ORTHO05D006911 2.4e-42 176.0 125 59.2
Prupe.7G085600 Prunus persica HOM05D005492 ORTHO05D006911 1.2e-38 163.7 104 68.3
MBI16_g14677_MAGBIO Magnolia biondii HOM05D005492 ORTHO05D006911 2.7e-38 162.5 114 60.5
Nn2g14030 Nelumbo nucifera HOM05D005492 ORTHO05D006911 1.4e-34 150.2 143 51.0
MD08G1145300 Malus domestica HOM05D005492 ORTHO05D006911 1.3e-32 143.7 88 70.5
CSS0004398 Camellia sinensis var. sinensis HOM05D005492 ORTHO05D006911 2.7e-30 136.0 91 60.4
MD16G1251000 Malus domestica HOM05D005492 ORTHO05D245813 1.9e-23 113.2 109 50.5
Dinv07042 Davidia involucrata HOM05D005492 ORTHO05D185078 3.2e-23 112.5 167 40.1
MD05G1007500 Malus domestica HOM05D005492 ORTHO05D006911 4.7e-22 108.6 103 51.5
Nn5g29750 Nelumbo nucifera HOM05D005492 ORTHO05D006911 7.4e-20 101.3 52 78.8
MD00G1203800 Malus domestica HOM05D005492 ORTHO05D247194 5.5e-15 85.1 92 43.5


User provided reference genes

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