Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PRCOL_00001778 Prasinoderma coloniale HOM05D003871 ORTHO05D004621 4.2e-235 817.8 453 100.0
Mapoly0035s0029 Marchantia polymorpha HOM05D003871 ORTHO05D004621 3.7e-114 416.0 401 54.4
Pp3c11_20980 Physcomitrium patens HOM05D003871 ORTHO05D004621 8.2e-114 414.8 407 53.1
SMO365G0068 Selaginella moellendorffii HOM05D003871 ORTHO05D004621 2.2e-111 406.8 401 52.1
Atru.chr5.417 Acer truncatum HOM05D003871 ORTHO05D004621 5.0e-111 405.6 398 54.8
BcaC08g45104 Brassica carinata HOM05D003871 ORTHO05D004621 1.5e-110 404.1 398 53.5
Os03g0116500 Oryza sativa ssp. japonica HOM05D003871 ORTHO05D004621 2.5e-110 403.3 398 54.0
Ciclev10020177m.g Citrus clementina HOM05D003871 ORTHO05D004621 3.2e-110 402.9 397 54.2
Zm00001eb001110 Zea mays HOM05D003871 ORTHO05D004621 3.2e-110 402.9 400 53.8
QL08p050260 Quercus lobata HOM05D003871 ORTHO05D004621 7.2e-110 401.7 398 54.0
BcaB02g07388 Brassica carinata HOM05D003871 ORTHO05D004621 9.4e-110 401.4 398 53.0
Carub.0005s2779 Capsella rubella HOM05D003871 ORTHO05D004621 3.6e-109 399.4 398 53.0
AL5G43380 Arabidopsis lyrata HOM05D003871 ORTHO05D004621 4.7e-109 399.1 398 53.5
AT3G61140 Arabidopsis thaliana HOM05D003871 ORTHO05D004621 4.7e-109 399.1 398 53.8
CANSAT56G3752 Cannabis sativa HOM05D003871 ORTHO05D004621 4.7e-109 399.1 408 52.0
Glyma.03G016800 Glycine max HOM05D003871 ORTHO05D004621 8.0e-109 398.3 397 53.4
BcaC07g42655 Brassica carinata HOM05D003871 ORTHO05D004621 1.0e-108 397.9 398 52.8
CARHR171420 Cardamine hirsuta HOM05D003871 ORTHO05D004621 1.4e-108 397.5 400 53.2
Manes.05G039500 Manihot esculenta HOM05D003871 ORTHO05D004621 1.4e-108 397.5 397 53.4
Hma1.2p1_0033F.1_g020520 Hydrangea macrophylla HOM05D003871 ORTHO05D004621 1.8e-108 397.1 398 53.3
TWI14G1012 Tripterygium wilfordii HOM05D003871 ORTHO05D004621 1.8e-108 397.1 407 53.3
arahy.Tifrunner.gnm1.ann1.AB99XC Arachis hypogaea HOM05D003871 ORTHO05D004621 3.0e-108 396.4 403 52.9
BcaC07g40617 Brassica carinata HOM05D003871 ORTHO05D004621 3.0e-108 396.4 398 52.5
TWI23G1177 Tripterygium wilfordii HOM05D003871 ORTHO05D004621 3.0e-108 396.4 398 54.0
PGR042G2189 Punica granatum HOM05D003871 ORTHO05D004621 4.0e-108 396.0 398 52.8
Sp5g02240 Schrenkiella parvula HOM05D003871 ORTHO05D004621 4.0e-108 396.0 398 52.8
Sopen01g037420 Solanum pennellii HOM05D003871 ORTHO05D004621 4.0e-108 396.0 400 52.5
C06p27130 Brassica napus HOM05D003871 ORTHO05D004621 5.2e-108 395.6 408 52.2
THA.LOC104802015 Tarenaya hassleriana HOM05D003871 ORTHO05D004621 5.2e-108 395.6 398 53.5
Duzib138G1891 Durio zibethinus HOM05D003871 ORTHO05D004621 6.8e-108 395.2 398 52.5
Thhalv10005978m.g Eutrema salsugineum HOM05D003871 ORTHO05D004621 6.8e-108 395.2 397 52.9
Lj3g0009639 Lotus japonicus HOM05D003871 ORTHO05D004621 6.8e-108 395.2 398 53.3
Thecc.01G366900 Theobroma cacao HOM05D003871 ORTHO05D004621 6.8e-108 395.2 398 52.8
CSS0031493 Camellia sinensis var. sinensis HOM05D003871 ORTHO05D004621 8.8e-108 394.8 398 52.5
CSS0038711 Camellia sinensis var. sinensis HOM05D003871 ORTHO05D004621 8.8e-108 394.8 398 52.5
Dinv43765 Davidia involucrata HOM05D003871 ORTHO05D004621 8.8e-108 394.8 398 53.5
A09p53200 Brassica napus HOM05D003871 ORTHO05D004621 1.2e-107 394.4 401 52.1
BolC6t37886H Brassica oleracea HOM05D003871 ORTHO05D004621 1.2e-107 394.4 409 52.1
AagrBONN_evm.TU.Sc2ySwM_362.2141 Anthoceros agrestis HOM05D003871 ORTHO05D004621 2.0e-107 393.7 367 55.0
arahy.Tifrunner.gnm1.ann1.6U8ZH2 Arachis hypogaea HOM05D003871 ORTHO05D004621 2.6e-107 393.3 403 52.6
Gohir.D11G089800 Gossypium hirsutum HOM05D003871 ORTHO05D004621 2.6e-107 393.3 397 52.6
Solyc01g091650.3 Solanum lycopersicum HOM05D003871 ORTHO05D004621 2.6e-107 393.3 400 52.2
MSTRG.4874 Avicennia marina HOM05D003871 ORTHO05D004621 3.4e-107 392.9 398 52.3
VMungo0331G1218 Vigna mungo HOM05D003871 ORTHO05D004621 3.4e-107 392.9 398 52.3
CDE02G2895 Ceratophyllum demersum HOM05D003871 ORTHO05D004621 4.4e-107 392.5 397 52.6
COL.COLO4_12614 Corchorus olitorius HOM05D003871 ORTHO05D004621 4.4e-107 392.5 397 52.4
FvH4_7g13330 Fragaria vesca HOM05D003871 ORTHO05D004621 4.4e-107 392.5 400 52.8
unitig_22.g5361 Utricularia gibba HOM05D003871 ORTHO05D004621 4.4e-107 392.5 398 52.5
GSVIVG01027510001 Vitis vinifera HOM05D003871 ORTHO05D004621 4.4e-107 392.5 399 52.9
C08p35990 Brassica napus HOM05D003871 ORTHO05D004621 5.7e-107 392.1 400 52.2
BolC8t51181H Brassica oleracea HOM05D003871 ORTHO05D004621 5.7e-107 392.1 400 52.2
CSS0039371 Camellia sinensis var. sinensis HOM05D003871 ORTHO05D004621 5.7e-107 392.1 401 52.6
CsaV3_3G009220 Cucumis sativus L. HOM05D003871 ORTHO05D004621 5.7e-107 392.1 401 52.4
Gohir.A11G085600 Gossypium hirsutum HOM05D003871 ORTHO05D004621 7.5e-107 391.7 397 52.4
Hund16957 Selenicereus undatus HOM05D003871 ORTHO05D004621 7.5e-107 391.7 398 52.3
PGSC0003DMG400027768 Solanum tuberosum HOM05D003871 ORTHO05D004621 7.5e-107 391.7 400 52.2
EL10Ac1g00989 Beta vulgaris HOM05D003871 ORTHO05D004621 9.8e-107 391.3 398 52.8
Sed0001471 Sechium edule HOM05D003871 ORTHO05D004621 9.8e-107 391.3 398 52.8
A07p25320 Brassica napus HOM05D003871 ORTHO05D004621 1.3e-106 391.0 408 51.7
MELO3C006142.2 Cucumis melo HOM05D003871 ORTHO05D004621 1.3e-106 391.0 401 52.1
Potri.002G154500 Populus trichocarpa HOM05D003871 ORTHO05D004621 1.3e-106 391.0 399 52.1
Duzib133G0086 Durio zibethinus HOM05D003871 ORTHO05D004621 2.2e-106 390.2 398 52.0
Gohir.A12G104100 Gossypium hirsutum HOM05D003871 ORTHO05D004621 2.2e-106 390.2 398 52.3
Gorai.008G117100 Gossypium raimondii HOM05D003871 ORTHO05D004621 2.2e-106 390.2 398 52.3
MD07G1127800 Malus domestica HOM05D003871 ORTHO05D004621 2.2e-106 390.2 398 52.5
Sabra02G0122500 Salix brachista HOM05D003871 ORTHO05D004621 2.2e-106 390.2 399 52.1
AUR62004300 Chenopodium quinoa HOM05D003871 ORTHO05D004621 2.8e-106 389.8 398 52.0
Potri.014G075500 Populus trichocarpa HOM05D003871 ORTHO05D004621 2.8e-106 389.8 400 52.2
Sc23g0003210 Simmondsia chinensis HOM05D003871 ORTHO05D004621 2.8e-106 389.8 398 52.8
Phvul.010G090500 Phaseolus vulgaris HOM05D003871 ORTHO05D004621 4.8e-106 389.0 397 52.1
Sed0018711 Sechium edule HOM05D003871 ORTHO05D004621 4.8e-106 389.0 401 52.4
CDE11G1114 Ceratophyllum demersum HOM05D003871 ORTHO05D004621 6.3e-106 388.7 397 52.4
Glyma.07G077100 Glycine max HOM05D003871 ORTHO05D004621 6.3e-106 388.7 397 52.4
FAN10G0206 Fragaria x ananassa HOM05D003871 ORTHO05D004621 1.1e-105 387.9 404 52.2
Gohir.D12G107500 Gossypium hirsutum HOM05D003871 ORTHO05D004621 1.1e-105 387.9 398 52.0
HanXRQChr17g0560011 Helianthus annuus HOM05D003871 ORTHO05D004621 1.1e-105 387.9 398 51.8
Migut.B01700 Erythranthe guttata HOM05D003871 ORTHO05D004621 1.4e-105 387.5 397 52.1
Eucgr.E00211 Eucalyptus grandis HOM05D003871 ORTHO05D004621 1.8e-105 387.1 403 51.6
TAR374G1595 Trochodendron aralioides HOM05D003871 ORTHO05D004621 1.8e-105 387.1 397 52.6
Dinv16518 Davidia involucrata HOM05D003871 ORTHO05D004621 2.4e-105 386.7 403 52.9
HanXRQChr16g0523641 Helianthus annuus HOM05D003871 ORTHO05D004621 2.4e-105 386.7 398 51.8
BraA09t40745Z Brassica rapa HOM05D003871 ORTHO05D004621 3.1e-105 386.3 399 51.9
Haze_15212 Corylus avellana HOM05D003871 ORTHO05D004621 3.1e-105 386.3 428 49.8
HPP92_007366 Vanilla planifolia HOM05D003871 ORTHO05D004621 3.1e-105 386.3 397 51.6
FAN03G3137 Fragaria x ananassa HOM05D003871 ORTHO05D004621 7.0e-105 385.2 412 51.5
Cc02_g37360 Coffea canephora HOM05D003871 ORTHO05D004621 9.1e-105 384.8 398 51.8
FAN10G4186 Fragaria x ananassa HOM05D003871 ORTHO05D004621 9.1e-105 384.8 398 52.5
FAN01G1876 Fragaria x ananassa HOM05D003871 ORTHO05D004621 1.2e-104 384.4 412 51.2
FAN06G4052 Fragaria x ananassa HOM05D003871 ORTHO05D004621 1.2e-104 384.4 412 51.2
PSO478G4452 Papaver somniferum HOM05D003871 ORTHO05D004621 1.2e-104 384.4 396 51.0
Cre05.g234300 Chlamydomonas reinhardtii HOM05D003871 ORTHO05D004621 1.6e-104 384.0 400 52.0
Ca_23740_v3 Cicer arietinum L. HOM05D003871 ORTHO05D004621 1.6e-104 384.0 399 51.1
PSO782G3116 Papaver somniferum HOM05D003871 ORTHO05D004621 1.6e-104 384.0 396 51.0
Prupe.2G156700 Prunus persica HOM05D003871 ORTHO05D004621 1.6e-104 384.0 398 51.8
CAN.G170.26 Capsicum annuum HOM05D003871 ORTHO05D004621 2.0e-104 383.6 405 50.9
DCAR_016001 Daucus carota HOM05D003871 ORTHO05D004621 2.0e-104 383.6 397 52.1
CiPaw.02G026000 Carya illinoinensis HOM05D003871 ORTHO05D004621 2.7e-104 383.3 398 51.8
SGA_v2.0_scaffold153G37076 Striga asiatica HOM05D003871 ORTHO05D004621 2.7e-104 383.3 398 51.3
FAN06G3893 Fragaria x ananassa HOM05D003871 ORTHO05D004621 3.5e-104 382.9 412 51.0
Aqoxy7G00418 Aquilegia oxysepala HOM05D003871 ORTHO05D004621 5.9e-104 382.1 397 50.9
CiPaw.02G026100 Carya illinoinensis HOM05D003871 ORTHO05D004621 5.9e-104 382.1 398 51.5
Lalb_Chr10g0097451 Lupinus albus HOM05D003871 ORTHO05D004621 5.9e-104 382.1 400 51.8
Lalb_Chr17g0339991 Lupinus albus HOM05D003871 ORTHO05D004621 5.9e-104 382.1 410 50.7
Aa31LG10G15210 Aethionema arabicum HOM05D003871 ORTHO05D004621 1.3e-103 380.9 411 50.9
MSTRG.20801 Avicennia marina HOM05D003871 ORTHO05D004621 2.3e-103 380.2 399 51.6
Medtr8g432630 Medicago truncatula HOM05D003871 ORTHO05D004621 3.8e-103 379.4 398 50.0
SEGI_36445 Sequoiadendron giganteum HOM05D003871 ORTHO05D004621 6.6e-103 378.6 408 51.2
Psat4g151960 Pisum sativum HOM05D003871 ORTHO05D004621 1.5e-102 377.5 398 50.3
TPR.G17571 Trifolium pratense HOM05D003871 ORTHO05D004621 1.5e-102 377.5 399 50.6
arahy.Tifrunner.gnm1.ann1.I68A9W Arachis hypogaea HOM05D003871 ORTHO05D004621 1.9e-102 377.1 429 48.5
Peaxi162Scf00021g00920 Petunia axillaris HOM05D003871 ORTHO05D004621 4.2e-102 375.9 402 51.2
arahy.Tifrunner.gnm1.ann1.WVA4TF Arachis hypogaea HOM05D003871 ORTHO05D004621 5.5e-102 375.6 429 48.3
Ca_07858_v3 Cicer arietinum L. HOM05D003871 ORTHO05D004621 1.6e-101 374.0 391 52.2
Nn1g01381 Nelumbo nucifera HOM05D003871 ORTHO05D004621 2.8e-101 373.2 428 49.3
Nitab4.5_0005109g0020 Nicotiana tabacum HOM05D003871 ORTHO05D004621 2.8e-101 373.2 435 47.8
Nitab4.5_0004973g0020 Nicotiana tabacum HOM05D003871 ORTHO05D004621 3.6e-101 372.9 401 50.9
SalBow3G3192 Salvia bowleyana HOM05D003871 ORTHO05D004621 3.6e-101 372.9 405 50.9
ECA234G1945 Erigeron canadensis HOM05D003871 ORTHO05D005816 1.0e-100 371.3 400 50.2
ClCG05G001830 Citrullus lanatus HOM05D003871 ORTHO05D004621 8.9e-100 368.2 407 49.9
TPR.G37846 Trifolium pratense HOM05D003871 ORTHO05D004621 3.4e-99 366.3 408 48.5
SHI13479 Sapria himalayana HOM05D003871 ORTHO05D004621 1.3e-98 364.4 398 49.5
Medtr7g076160 Medicago truncatula HOM05D003871 ORTHO05D004621 3.7e-98 362.8 398 50.5
Psat3g113760 Pisum sativum HOM05D003871 ORTHO05D004621 3.7e-98 362.8 409 47.4
MCO11G248 Micromonas commoda HOM05D003871 ORTHO05D004621 1.6e-96 357.5 402 48.3
vmacro20965 Vaccinium macrocarpon HOM05D003871 ORTHO05D004621 1.3e-95 354.4 451 45.2
Cpa.g.sc18.218 Carica papaya HOM05D003871 ORTHO05D004621 2.9e-95 353.2 304 58.6
Rhsim07G0020500 Rhododendron simsii HOM05D003871 ORTHO05D004621 6.6e-95 352.1 458 45.2
ATR0757G035 Amborella trichopoda HOM05D003871 ORTHO05D004621 7.3e-94 348.6 348 53.4
Lsat_1_v5_gn_4_37061 Lactuca sativa HOM05D003871 ORTHO05D004621 3.6e-93 346.3 398 48.5
Gorai.007G095800 Gossypium raimondii HOM05D003871 ORTHO05D004621 6.1e-93 345.5 348 52.9
MBI12_g36508_MAGBIO Magnolia biondii HOM05D003871 ORTHO05D004621 1.5e-91 340.9 399 48.9
Hund27317 Selenicereus undatus HOM05D003871 ORTHO05D004621 6.4e-90 335.5 348 53.2
MD01G1050400 Malus domestica HOM05D003871 ORTHO05D004621 5.4e-89 332.4 440 44.3
SGA_v2.0_scaffold95G28865 Striga asiatica HOM05D003871 ORTHO05D004621 9.2e-89 331.6 428 45.8
Actinidia38296 Actinidia chinensis HOM05D003871 ORTHO05D004621 3.0e-87 326.6 294 55.8
CSS0026628 Camellia sinensis var. sinensis HOM05D003871 ORTHO05D004621 1.5e-86 324.3 339 52.2
Rhsim01G0153400 Rhododendron simsii HOM05D003871 ORTHO05D004621 2.5e-86 323.6 501 40.1
Haze_27079 Corylus avellana HOM05D003871 ORTHO05D004621 1.1e-84 318.2 411 43.6
Ca_23745_v3 Cicer arietinum L. HOM05D003871 ORTHO05D004621 2.3e-84 317.0 399 45.4
Sabra14G0056300 Salix brachista HOM05D003871 ORTHO05D004621 4.1e-81 306.2 458 41.7
vmacro13332 Vaccinium macrocarpon HOM05D003871 ORTHO05D004621 1.2e-80 304.7 434 42.9
CSS0019666 Camellia sinensis var. sinensis HOM05D003871 ORTHO05D004621 3.3e-78 296.6 388 44.8
PSO782G0235 Papaver somniferum HOM05D003871 ORTHO05D004621 5.2e-76 289.3 385 42.3
Lj7C518G12 Lonicera japonica HOM05D003871 ORTHO05D004621 6.4e-74 282.3 396 42.7
TAR375G0585 Trochodendron aralioides HOM05D003871 ORTHO05D004621 1.1e-73 281.6 296 50.7
Pp3c7_5660 Physcomitrium patens HOM05D003871 ORTHO05D004621 1.9e-70 270.8 271 52.4
SEGI_15431 Sequoiadendron giganteum HOM05D003871 ORTHO05D004621 1.8e-60 237.7 278 48.9
AUR62022749 Chenopodium quinoa HOM05D000087 ORTHO05D004621 3.8e-58 229.9 243 51.4
RcHm_v2.0_Chr1g0352641 Rosa chinensis HOM05D003871 ORTHO05D004621 3.5e-56 223.4 243 52.7
CARHR257760 Cardamine hirsuta HOM05D003871 ORTHO05D004621 1.5e-54 218.0 244 48.8
Cfa025745 Carpinus fangiana HOM05D003871 ORTHO05D004621 9.6e-54 215.3 434 35.9
Actinidia32928 Actinidia chinensis HOM05D003871 ORTHO05D004621 1.8e-52 211.1 387 36.7
Peaxi162Scf00233g00516 Petunia axillaris HOM05D003871 ORTHO05D004621 1.6e-48 198.0 243 43.6
AL8G39820 Arabidopsis lyrata HOM05D003871 ORTHO05D004621 8.7e-47 192.2 291 36.8
Carub.0003s3282 Capsella rubella HOM05D003871 ORTHO05D004621 6.7e-39 166.0 267 38.2
EL10Ac1g00724 Beta vulgaris HOM05D003871 ORTHO05D004621 7.6e-35 152.5 158 52.5
RcHm_v2.0_Chr1g0352651 Rosa chinensis HOM05D003871 ORTHO05D004621 2.7e-32 144.1 128 55.5
BolC3t17208H Brassica oleracea HOM05D003843 ORTHO05D004621 6.1e-32 142.9 205 38.0
Medtr6g025300 Medicago truncatula HOM05D003871 ORTHO05D004621 7.9e-32 142.5 222 36.9
C03p49270 Brassica napus HOM05D003871 ORTHO05D004621 5.1e-31 139.8 372 29.6
CBR_g34614 Chara braunii HOM05D000019 ORTHO05D000002 2.8e-29 134.0 119 57.1
BcaC01g03725 Brassica carinata HOM05D003871 ORTHO05D004621 1.4e-28 131.7 297 31.6
Oeu038681.1 Olea europaea HOM05D003871 ORTHO05D004621 2.4e-20 104.4 98 54.1
Hma1.2p1_0775F.1_g216560 Hydrangea macrophylla HOM05D003871 ORTHO05D004621 6.9e-20 102.8 98 54.1
Cre13.g581450 Chlamydomonas reinhardtii HOM05D003221 ORTHO05D004432 1.2e-19 102.1 364 27.2
PRCOL_00002590 Prasinoderma coloniale HOM05D003221 ORTHO05D004432 5.1e-15 86.7 354 25.1
Zm00001eb403970 Zea mays HOM05D003871 ORTHO05D004621 2.6e-14 84.3 123 44.7
SMO118G0024 Selaginella moellendorffii HOM05D003221 ORTHO05D004432 1.3e-13 82.0 364 21.7
BcaC01g03724 Brassica carinata HOM05D003871 ORTHO05D039068 3.1e-12 77.4 85 43.5
Pp3c12_14600 Physcomitrium patens HOM05D003221 ORTHO05D004432 3.1e-12 77.4 360 21.4
HPP92_024646 Vanilla planifolia HOM05D003221 ORTHO05D004432 3.1e-12 77.4 346 24.6
TAR375G0392 Trochodendron aralioides HOM05D003871 ORTHO05D004621 5.3e-12 76.6 74 51.4
HPP92_007379 Vanilla planifolia HOM05D003871 ORTHO05D004621 5.3e-12 76.6 74 52.7
BraA07t30175Z Brassica rapa HOM05D003871 ORTHO05D004621 1.5e-11 75.1 74 50.0
CBR_g40800 Chara braunii HOM05D003221 ORTHO05D004432 3.5e-11 73.9 312 21.8
Haze_26412 Corylus avellana HOM05D003221 ORTHO05D004432 6.5e-10 69.7 243 26.3
arahy.Tifrunner.gnm1.ann1.GU6ASX Arachis hypogaea HOM05D003871 ORTHO05D004621 4.7e-08 63.5 87 43.7
ClCG06G000070 Citrullus lanatus HOM05D002904 ORTHO05D003206 2.3e-07 61.2 296 25.7


User provided reference genes

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