Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PRCOL_00001738 Prasinoderma coloniale HOM05D004399 ORTHO05D005303 0.0e+00 1875.1 987 100.0
Mapoly0124s0026 Marchantia polymorpha HOM05D004399 ORTHO05D005303 2.9e-63 248.1 214 59.3
Dinv34060 Davidia involucrata HOM05D004399 ORTHO05D005303 1.7e-58 232.3 218 56.4
QL03p073920 Quercus lobata HOM05D004399 ORTHO05D005303 4.8e-58 230.7 217 55.8
Pp3c2_220 Physcomitrium patens HOM05D004399 ORTHO05D005303 1.1e-57 229.6 215 55.3
SMO196G0238 Selaginella moellendorffii HOM05D004399 ORTHO05D005303 1.1e-57 229.6 214 56.1
Thecc.02G328800 Theobroma cacao HOM05D004399 ORTHO05D005303 1.8e-57 228.8 213 55.4
Cpa.g.sc1.139 Carica papaya HOM05D004399 ORTHO05D005303 6.9e-57 226.9 213 55.4
Gohir.A03G104700 Gossypium hirsutum HOM05D004399 ORTHO05D005303 6.9e-57 226.9 213 55.4
Duzib251G0565 Durio zibethinus HOM05D004399 ORTHO05D005303 1.2e-56 226.1 213 55.4
Nn3g17119 Nelumbo nucifera HOM05D004399 ORTHO05D005303 1.5e-56 225.7 211 55.9
Nn4g24779 Nelumbo nucifera HOM05D004399 ORTHO05D005303 1.5e-56 225.7 211 55.9
Sc11g0002530 Simmondsia chinensis HOM05D004399 ORTHO05D005303 1.5e-56 225.7 212 53.8
CSS0044473 Camellia sinensis var. sinensis HOM05D004399 ORTHO05D005303 2.0e-56 225.3 209 55.5
CAN.G707.11 Capsicum annuum HOM05D004399 ORTHO05D005303 2.6e-56 224.9 223 53.4
Cre03.g154850 Chlamydomonas reinhardtii HOM05D004399 ORTHO05D005303 2.6e-56 224.9 217 55.8
SGA_v2.0_scaffold16G07803 Striga asiatica HOM05D004399 ORTHO05D005303 2.6e-56 224.9 209 56.5
CiPaw.05G124200 Carya illinoinensis HOM05D004399 ORTHO05D005303 3.4e-56 224.6 209 55.5
TWI75G0511 Tripterygium wilfordii HOM05D004399 ORTHO05D005303 3.4e-56 224.6 209 55.5
COL.COLO4_27864 Corchorus olitorius HOM05D004399 ORTHO05D005303 4.5e-56 224.2 213 54.5
MD13G1060600 Malus domestica HOM05D004399 ORTHO05D005303 4.5e-56 224.2 211 54.5
Cfa008867 Carpinus fangiana HOM05D004399 ORTHO05D005303 5.9e-56 223.8 211 55.0
Sopen05g006940 Solanum pennellii HOM05D004399 ORTHO05D005303 5.9e-56 223.8 218 53.7
AagrBONN_evm.TU.Sc2ySwM_368.1886 Anthoceros agrestis HOM05D004399 ORTHO05D005303 7.7e-56 223.4 214 57.5
Haze_11894 Corylus avellana HOM05D004399 ORTHO05D005303 7.7e-56 223.4 211 54.5
Hund05832 Selenicereus undatus HOM05D004399 ORTHO05D005303 7.7e-56 223.4 213 54.9
Solyc05g012150.4 Solanum lycopersicum HOM05D004399 ORTHO05D005303 7.7e-56 223.4 218 53.7
PGSC0003DMG402028313 Solanum tuberosum HOM05D004399 ORTHO05D005303 7.7e-56 223.4 218 53.7
RcHm_v2.0_Chr4g0438081 Rosa chinensis HOM05D004399 ORTHO05D005303 1.0e-55 223.0 209 55.0
Glyma.07G066700 Glycine max HOM05D004399 ORTHO05D005303 1.3e-55 222.6 209 55.5
CBR_g38753 Chara braunii HOM05D004399 ORTHO05D001303 2.2e-55 221.9 220 53.6
PSO832G2862 Papaver somniferum HOM05D004399 ORTHO05D005303 2.2e-55 221.9 211 54.5
Prupe.1G288800 Prunus persica HOM05D004399 ORTHO05D005303 2.2e-55 221.9 209 54.5
A06p42990 Brassica napus HOM05D004399 ORTHO05D005303 2.9e-55 221.5 218 53.7
Lj6A777T47 Lonicera japonica HOM05D004399 ORTHO05D005303 2.9e-55 221.5 210 55.7
Phvul.010G102900 Phaseolus vulgaris HOM05D004399 ORTHO05D005303 2.9e-55 221.5 209 54.5
Lj3C1029T7 Lonicera japonica HOM05D004399 ORTHO05D005303 3.8e-55 221.1 211 54.5
VMungo0331G0538 Vigna mungo HOM05D004399 ORTHO05D005303 3.8e-55 221.1 209 55.0
BcaC06g31162 Brassica carinata HOM05D004399 ORTHO05D005303 5.0e-55 220.7 217 53.9
C07p34040 Brassica napus HOM05D004399 ORTHO05D005303 5.0e-55 220.7 217 53.9
BolC7t43918H Brassica oleracea HOM05D004399 ORTHO05D005303 5.0e-55 220.7 217 53.9
FvH4_4g29830 Fragaria vesca HOM05D004399 ORTHO05D005303 5.0e-55 220.7 209 55.5
Peaxi162Scf00175g00428 Petunia axillaris HOM05D004399 ORTHO05D005303 5.0e-55 220.7 224 52.2
Potri.010G157500 Populus trichocarpa HOM05D004399 ORTHO05D005303 5.0e-55 220.7 209 54.5
Ciclev10032681m.g Citrus clementina HOM05D004399 ORTHO05D005303 6.5e-55 220.3 209 54.5
Migut.L01179 Erythranthe guttata HOM05D004399 ORTHO05D005303 6.5e-55 220.3 211 55.5
Lalb_Chr17g0341271 Lupinus albus HOM05D004399 ORTHO05D005303 6.5e-55 220.3 209 55.0
Ca_25695_v3 Cicer arietinum L. HOM05D004399 ORTHO05D005303 8.5e-55 219.9 209 54.5
A02p33520 Brassica napus HOM05D004399 ORTHO05D005303 1.1e-54 219.5 218 53.2
THA.LOC104805201 Tarenaya hassleriana HOM05D004399 ORTHO05D005303 1.4e-54 219.2 214 53.3
vmacro10433 Vaccinium macrocarpon HOM05D004399 ORTHO05D005303 1.4e-54 219.2 211 55.5
Zm00001eb433530 Zea mays HOM05D004399 ORTHO05D005303 1.4e-54 219.2 212 54.2
Ah.02g126810 Amaranthus hybridus HOM05D004399 ORTHO05D005303 1.9e-54 218.8 215 54.0
CDE02G0376 Ceratophyllum demersum HOM05D004399 ORTHO05D005303 1.9e-54 218.8 212 53.8
Eucgr.B03145 Eucalyptus grandis HOM05D004399 ORTHO05D005303 1.9e-54 218.8 209 55.0
Thhalv10004874m.g Eutrema salsugineum HOM05D004399 ORTHO05D005303 1.9e-54 218.8 218 53.7
Aa31LG2G6990 Aethionema arabicum HOM05D004399 ORTHO05D005303 2.5e-54 218.4 218 53.2
arahy.Tifrunner.gnm1.ann1.MJW4NY Arachis hypogaea HOM05D004399 ORTHO05D005303 2.5e-54 218.4 213 54.5
Sp2g14510 Schrenkiella parvula HOM05D004399 ORTHO05D005303 2.5e-54 218.4 217 53.9
FAN22G0874 Fragaria x ananassa HOM05D004399 ORTHO05D005303 3.2e-54 218.0 209 54.1
PSO017G5651 Papaver somniferum HOM05D004399 ORTHO05D005303 3.2e-54 218.0 211 54.0
Cc06_g15640 Coffea canephora HOM05D004399 ORTHO05D005303 4.2e-54 217.6 211 53.6
ECA233G2368 Erigeron canadensis HOM05D004399 ORTHO05D005303 4.2e-54 217.6 209 54.5
Gorai.005G145900 Gossypium raimondii HOM05D004399 ORTHO05D005303 4.2e-54 217.6 207 54.6
BcaB07g30287 Brassica carinata HOM05D004399 ORTHO05D005303 5.5e-54 217.2 218 53.2
Ca_08608_v3 Cicer arietinum L. HOM05D004399 ORTHO05D005303 5.5e-54 217.2 211 54.0
DCAR_024127 Daucus carota HOM05D004399 ORTHO05D005303 5.5e-54 217.2 213 52.6
FAN12G0059 Fragaria x ananassa HOM05D004399 ORTHO05D005303 5.5e-54 217.2 209 55.0
Hma1.2p1_0566F.1_g179870 Hydrangea macrophylla HOM05D004399 ORTHO05D005303 5.5e-54 217.2 209 54.1
Manes.05G109300 Manihot esculenta HOM05D004399 ORTHO05D005303 5.5e-54 217.2 213 53.5
Psat3g063920 Pisum sativum HOM05D004399 ORTHO05D005303 5.5e-54 217.2 209 54.1
Potri.008G097100 Populus trichocarpa HOM05D004399 ORTHO05D005303 5.5e-54 217.2 209 53.6
PGR083G0959 Punica granatum HOM05D004399 ORTHO05D005303 5.5e-54 217.2 210 53.8
Ah.03g138840 Amaranthus hybridus HOM05D004399 ORTHO05D005303 7.2e-54 216.9 211 53.6
MSTRG.7738 Avicennia marina HOM05D004399 ORTHO05D005303 7.2e-54 216.9 211 54.5
BcaC06g31172 Brassica carinata HOM05D004399 ORTHO05D005303 7.2e-54 216.9 218 53.2
DCAR_026680 Daucus carota HOM05D004399 ORTHO05D005303 9.4e-54 216.5 213 54.5
FAN17G2847 Fragaria x ananassa HOM05D004399 ORTHO05D005303 9.4e-54 216.5 209 54.1
MBI14_g37191_MAGBIO Magnolia biondii HOM05D004399 ORTHO05D005303 9.4e-54 216.5 212 53.3
Glyma.16G032800 Glycine max HOM05D004399 ORTHO05D005303 1.2e-53 216.1 209 54.5
Medtr4g094990 Medicago truncatula HOM05D004399 ORTHO05D005303 1.2e-53 216.1 209 53.6
Aqoxy3G03260 Aquilegia oxysepala HOM05D004399 ORTHO05D005303 1.6e-53 215.7 211 54.0
AL5G13480 Arabidopsis lyrata HOM05D004399 ORTHO05D005303 1.6e-53 215.7 218 53.7
Lj1g0019699 Lotus japonicus HOM05D004399 ORTHO05D005303 1.6e-53 215.7 213 54.0
SalBow4G1206 Salvia bowleyana HOM05D004399 ORTHO05D005303 1.6e-53 215.7 216 52.8
ClCG08G010510 Citrullus lanatus HOM05D004399 ORTHO05D005303 2.1e-53 215.3 209 54.5
Lsat_1_v5_gn_8_46460 Lactuca sativa HOM05D004399 ORTHO05D005303 2.1e-53 215.3 209 53.6
BcaC03g17230 Brassica carinata HOM05D004399 ORTHO05D005303 3.6e-53 214.5 217 53.0
BolC2t11249H Brassica oleracea HOM05D004399 ORTHO05D005303 3.6e-53 214.5 217 53.0
Carub.0005s0281 Capsella rubella HOM05D004399 ORTHO05D005303 3.6e-53 214.5 218 53.2
Gohir.D02G129900 Gossypium hirsutum HOM05D004399 ORTHO05D005303 3.6e-53 214.5 207 53.6
AT2G03690 Arabidopsis thaliana HOM05D004399 ORTHO05D005303 4.7e-53 214.2 218 52.8
MD16G1059800 Malus domestica HOM05D004399 ORTHO05D005303 4.7e-53 214.2 211 53.1
TAR622G1336 Trochodendron aralioides HOM05D004399 ORTHO05D005303 4.7e-53 214.2 209 54.5
arahy.Tifrunner.gnm1.ann1.E76E6E Arachis hypogaea HOM05D004399 ORTHO05D005303 6.1e-53 213.8 213 54.0
Nitab4.5_0007061g0010 Nicotiana tabacum HOM05D004399 ORTHO05D005303 6.1e-53 213.8 211 54.0
EL10Ac6g15013 Beta vulgaris HOM05D004399 ORTHO05D005303 7.9e-53 213.4 209 54.1
CANSAT11G0637 Cannabis sativa HOM05D004399 ORTHO05D005303 7.9e-53 213.4 209 53.1
CDE04G3031 Ceratophyllum demersum HOM05D004399 ORTHO05D005303 7.9e-53 213.4 212 52.4
AL5G13460 Arabidopsis lyrata HOM05D004399 ORTHO05D005303 1.0e-52 213.0 218 53.2
HanXRQChr12g0363151 Helianthus annuus HOM05D004399 ORTHO05D005303 1.0e-52 213.0 209 53.1
Rhsim09G0126300 Rhododendron simsii HOM05D004399 ORTHO05D005303 1.0e-52 213.0 224 52.7
CANSAT64G2641 Cannabis sativa HOM05D004399 ORTHO05D005303 1.4e-52 212.6 209 53.1
AUR62003087 Chenopodium quinoa HOM05D004399 ORTHO05D005303 1.8e-52 212.2 213 53.1
Oeu031535.3 Olea europaea HOM05D004399 ORTHO05D005303 1.8e-52 212.2 238 50.0
Aqoxy4G03091 Aquilegia oxysepala HOM05D004399 ORTHO05D005303 2.3e-52 211.8 209 54.1
CARHR146010 Cardamine hirsuta HOM05D004399 ORTHO05D005303 3.0e-52 211.5 218 52.8
Medtr7g095060 Medicago truncatula HOM05D004399 ORTHO05D005303 3.0e-52 211.5 209 52.6
Nitab4.5_0000231g0090 Nicotiana tabacum HOM05D004399 ORTHO05D005303 3.0e-52 211.5 244 48.0
Os04g0674200 Oryza sativa ssp. japonica HOM05D004399 ORTHO05D005303 3.0e-52 211.5 212 52.4
Os05g0188800 Oryza sativa ssp. japonica HOM05D004399 ORTHO05D005303 3.9e-52 211.1 212 52.4
PSO478G0010 Papaver somniferum HOM05D004399 ORTHO05D005303 3.9e-52 211.1 211 53.6
Sabra08G0073300 Salix brachista HOM05D004399 ORTHO05D005303 3.9e-52 211.1 209 53.1
AUR62007904 Chenopodium quinoa HOM05D004399 ORTHO05D005303 6.7e-52 210.3 213 53.1
MELO3C011412.2 Cucumis melo HOM05D004399 ORTHO05D005303 6.7e-52 210.3 213 52.1
CsaV3_6G033760 Cucumis sativus L. HOM05D004399 ORTHO05D005303 6.7e-52 210.3 209 52.6
HanXRQChr08g0211681 Helianthus annuus HOM05D004399 ORTHO05D005303 6.7e-52 210.3 209 52.2
Sed0000590 Sechium edule HOM05D004399 ORTHO05D005303 6.7e-52 210.3 209 52.6
Medtr4g094998 Medicago truncatula HOM05D004399 ORTHO05D005303 5.7e-51 207.2 209 51.7
SEGI_29941 Sequoiadendron giganteum HOM05D004399 ORTHO05D005303 1.3e-50 206.1 214 50.9
Atru.chr11.1611 Acer truncatum HOM05D004399 ORTHO05D005303 6.3e-50 203.8 211 51.7
SalBow2G2941 Salvia bowleyana HOM05D004399 ORTHO05D005303 1.1e-49 203.0 271 44.3
Sed0002833 Sechium edule HOM05D004399 ORTHO05D005303 1.4e-49 202.6 209 51.7
TPR.G29232 Trifolium pratense HOM05D004399 ORTHO05D005303 1.4e-49 202.6 209 53.6
MCO10G350 Micromonas commoda HOM05D004399 ORTHO05D005303 5.9e-48 197.2 223 48.4
C02p51640 Brassica napus HOM05D004399 ORTHO05D005303 1.0e-47 196.4 201 52.2
AUR62019674 Chenopodium quinoa HOM05D004399 ORTHO05D005303 2.2e-42 178.7 220 47.3
MD13G1061300 Malus domestica HOM05D004399 ORTHO05D005303 6.8e-36 157.1 152 55.9
ATR1120G108 Amborella trichopoda HOM05D004399 ORTHO05D005303 1.5e-35 156.0 169 47.3
Sed0017877 Sechium edule HOM05D004399 ORTHO05D005303 3.4e-35 154.8 153 49.0
GSVIVG01000552001 Vitis vinifera HOM05D004399 ORTHO05D005303 7.5e-35 153.7 149 57.0
SalBow4G2688 Salvia bowleyana HOM05D004399 ORTHO05D005303 4.8e-34 151.0 151 51.7
TPR.G35678 Trifolium pratense HOM05D004399 ORTHO05D005303 2.9e-31 141.7 128 53.1
Cfa024149 Carpinus fangiana HOM05D004399 ORTHO05D005303 5.0e-31 141.0 219 38.8
SalBow4G1336 Salvia bowleyana HOM05D004399 ORTHO05D005303 8.0e-29 133.7 166 44.0
HanXRQChr10g0298331 Helianthus annuus HOM05D004399 ORTHO05D005303 2.6e-27 128.6 128 50.0
Phvul.007G165400 Phaseolus vulgaris HOM05D004399 ORTHO05D005303 8.3e-26 123.6 108 52.8
SMO187G0002 Selaginella moellendorffii HOM05D004399 ORTHO05D005303 1.8e-25 122.5 137 48.2
Glyma.02G119500 Glycine max HOM05D004399 ORTHO05D005303 1.6e-24 119.4 108 54.6
vmacro20929 Vaccinium macrocarpon HOM05D004399 ORTHO05D005303 2.0e-24 119.0 134 53.0
unitig_8.g3180 Utricularia gibba HOM05D004399 ORTHO05D005303 1.8e-20 105.9 136 44.9
MBI14_g45258_MAGBIO Magnolia biondii HOM05D004399 ORTHO05D005303 1.2e-16 93.2 88 50.0
Carub.0005s2415 Capsella rubella HOM05D004399 ORTHO05D005303 1.7e-15 89.4 102 50.0
SalBow4G1755 Salvia bowleyana HOM05D004399 ORTHO05D005303 8.3e-10 70.5 61 54.1
Phvul.007G165450 Phaseolus vulgaris HOM05D004399 ORTHO05D005303 4.1e-09 68.2 66 57.6
SalBow4G1060 Salvia bowleyana HOM05D004399 ORTHO05D005303 4.1e-09 68.2 65 50.8
FAN04G2106 Fragaria x ananassa HOM05D004399 ORTHO05D005303 7.0e-09 67.4 75 49.3
Actinidia12918 Actinidia chinensis HOM05D004399 ORTHO05D005303 1.2e-08 66.6 65 49.2
HanXRQChr13g0414251 Helianthus annuus HOM05D004399 ORTHO05D005303 1.7e-07 62.8 87 48.3
TPR.G35682 Trifolium pratense HOM05D004399 ORTHO05D005303 1.7e-07 62.8 52 63.5
RcHm_v2.0_Chr7g0182561 Rosa chinensis HOM05D004399 ORTHO05D005303 1.5e-06 59.7 53 64.2
SalBow4G1426 Salvia bowleyana HOM05D000195 ORTHO05D000377 1.9e-06 59.3 48 64.6
ATR1120G192 Amborella trichopoda HOM05D004399 ORTHO05D005303 2.5e-06 58.9 48 62.5


User provided reference genes

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