Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PRCOL_00001544 Prasinoderma coloniale HOM05D004263 ORTHO05D004931 0.0e+00 3227.2 1667 100.0
Pp3c14_1240 Physcomitrium patens HOM05D004263 ORTHO05D004931 4.1e-126 457.6 1097 32.8
Mapoly0011s0120 Marchantia polymorpha HOM05D004263 ORTHO05D004931 1.9e-123 448.7 1076 33.4
HPP92_004167 Vanilla planifolia HOM05D004263 ORTHO05D004931 1.2e-122 446.0 1065 31.4
TAR627G0082 Trochodendron aralioides HOM05D004263 ORTHO05D004931 2.6e-120 438.3 1081 31.3
Glyma.13G301100 Glycine max HOM05D004263 ORTHO05D004931 3.3e-120 438.0 1067 32.0
Os08g0178100 Oryza sativa ssp. japonica HOM05D004263 ORTHO05D004931 4.4e-120 437.6 1075 32.0
Phvul.005G107700 Phaseolus vulgaris HOM05D004263 ORTHO05D004931 2.8e-119 434.9 1066 31.6
Lj3g0003932 Lotus japonicus HOM05D004263 ORTHO05D004931 3.7e-119 434.5 1065 31.6
Sopen06g001070 Solanum pennellii HOM05D004263 ORTHO05D004931 4.8e-119 434.1 1076 30.8
Ca_01536_v3 Cicer arietinum L. HOM05D004263 ORTHO05D004931 6.3e-119 433.7 1066 31.0
Psat2g144400 Pisum sativum HOM05D004263 ORTHO05D004931 1.1e-118 433.0 1071 31.1
arahy.Tifrunner.gnm1.ann1.RA2UAB Arachis hypogaea HOM05D004263 ORTHO05D004931 1.8e-118 432.2 1090 31.6
Solyc06g005080.4 Solanum lycopersicum HOM05D004263 ORTHO05D004931 1.8e-118 432.2 1076 30.7
CiPaw.03G169700 Carya illinoinensis HOM05D004263 ORTHO05D004931 2.4e-118 431.8 1066 31.4
RcHm_v2.0_Chr2g0161771 Rosa chinensis HOM05D004263 ORTHO05D004931 5.3e-118 430.6 1069 31.5
CSS0035503 Camellia sinensis var. sinensis HOM05D004263 ORTHO05D004931 7.0e-118 430.3 1080 31.3
Cc04_g12270 Coffea canephora HOM05D004263 ORTHO05D004931 9.1e-118 429.9 1063 31.4
Gohir.D01G015400 Gossypium hirsutum HOM05D004263 ORTHO05D004931 9.1e-118 429.9 1067 30.9
THA.LOC104809434 Tarenaya hassleriana HOM05D004263 ORTHO05D004931 9.1e-118 429.9 1080 31.7
CsaV3_7G004120 Cucumis sativus L. HOM05D004263 ORTHO05D004931 1.2e-117 429.5 1097 30.6
Actinidia39296 Actinidia chinensis HOM05D004263 ORTHO05D004931 2.0e-117 428.7 1069 31.5
Gohir.A01G015400 Gossypium hirsutum HOM05D004263 ORTHO05D004931 2.0e-117 428.7 1067 30.7
PSO339G5244 Papaver somniferum HOM05D004263 ORTHO05D004931 2.7e-117 428.3 1063 31.0
Ciclev10014147m.g Citrus clementina HOM05D004263 ORTHO05D004931 3.5e-117 427.9 1070 31.4
PSO801G0468 Papaver somniferum HOM05D004263 ORTHO05D004931 3.5e-117 427.9 1063 31.0
MD14G1065300 Malus domestica HOM05D004263 ORTHO05D004931 4.5e-117 427.6 1069 31.6
Peaxi162Scf00255g01022 Petunia axillaris HOM05D004263 ORTHO05D004931 4.5e-117 427.6 1085 30.4
Potri.013G147600 Populus trichocarpa HOM05D004263 ORTHO05D004931 4.5e-117 427.6 1077 31.3
Gorai.002G017100 Gossypium raimondii HOM05D004263 ORTHO05D004931 5.9e-117 427.2 1067 30.7
TWI75G0058 Tripterygium wilfordii HOM05D004263 ORTHO05D004931 1.0e-116 426.4 1078 31.0
Eucgr.K00914 Eucalyptus grandis HOM05D004263 ORTHO05D004931 1.3e-116 426.0 1077 31.0
Lalb_Chr22g0356351 Lupinus albus HOM05D004263 ORTHO05D004931 1.3e-116 426.0 997 31.9
FvH4_6g44560 Fragaria vesca HOM05D004263 ORTHO05D004931 2.2e-116 425.2 1065 31.2
Manes.12G082900 Manihot esculenta HOM05D004263 ORTHO05D004931 2.2e-116 425.2 1084 31.0
Prupe.3G231000 Prunus persica HOM05D004263 ORTHO05D004931 2.2e-116 425.2 1067 31.6
Sed0028127 Sechium edule HOM05D004263 ORTHO05D004931 2.2e-116 425.2 1086 31.1
MD17G1084700 Malus domestica HOM05D004263 ORTHO05D004931 2.9e-116 424.9 1068 31.5
CARHR012770 Cardamine hirsuta HOM05D004263 ORTHO05D004931 3.8e-116 424.5 1068 31.4
Medtr8g063380 Medicago truncatula HOM05D004263 ORTHO05D004931 3.8e-116 424.5 1082 31.1
SGA_v2.0_scaffold90G27889 Striga asiatica HOM05D004263 ORTHO05D004931 3.8e-116 424.5 1080 31.0
AL1G23830 Arabidopsis lyrata HOM05D004263 ORTHO05D004931 5.0e-116 424.1 1067 31.5
Glyma.12G201100 Glycine max HOM05D004263 ORTHO05D004931 5.0e-116 424.1 1068 31.3
GSVIVG01030005001 Vitis vinifera HOM05D004263 ORTHO05D004931 5.0e-116 424.1 1078 31.2
PGR142G2990 Punica granatum HOM05D004263 ORTHO05D004931 6.5e-116 423.7 1079 31.2
QL08p037295 Quercus lobata HOM05D004263 ORTHO05D004931 6.5e-116 423.7 1072 31.5
CSS0005038 Camellia sinensis var. sinensis HOM05D004263 ORTHO05D004931 8.5e-116 423.3 1081 30.8
Thhalv10006686m.g Eutrema salsugineum HOM05D004263 ORTHO05D004931 1.1e-115 422.9 1068 31.5
CSS0002238 Camellia sinensis var. sinensis HOM05D004263 ORTHO05D004931 1.5e-115 422.5 1091 30.7
Ah.11g047230 Amaranthus hybridus HOM05D004263 ORTHO05D004931 1.9e-115 422.2 1080 30.6
Aqoxy1G01192 Aquilegia oxysepala HOM05D004263 ORTHO05D004931 1.9e-115 422.2 1082 31.0
CANSAT64G2398 Cannabis sativa HOM05D004263 ORTHO05D004931 3.2e-115 421.4 1067 31.0
COL.COLO4_13682 Corchorus olitorius HOM05D004263 ORTHO05D004931 4.2e-115 421.0 1082 31.0
C08p15450 Brassica napus HOM05D004263 ORTHO05D004931 5.5e-115 420.6 1082 30.6
Migut.O00120 Erythranthe guttata HOM05D004263 ORTHO05D004931 7.2e-115 420.2 1064 31.6
Hma1.2p1_0565F.1_g179560 Hydrangea macrophylla HOM05D004263 ORTHO05D004931 1.2e-114 419.5 1063 30.8
arahy.Tifrunner.gnm1.ann1.0PC56D Arachis hypogaea HOM05D004263 ORTHO05D004931 1.6e-114 419.1 1130 30.6
CSS0035062 Camellia sinensis var. sinensis HOM05D004263 ORTHO05D004931 1.6e-114 419.1 1079 31.3
ECA246G4434 Erigeron canadensis HOM05D004263 ORTHO05D004931 1.6e-114 419.1 1064 31.2
SalBow7G3995 Salvia bowleyana HOM05D004263 ORTHO05D004931 1.6e-114 419.1 1073 29.9
Sp1g11070 Schrenkiella parvula HOM05D004263 ORTHO05D004931 1.6e-114 419.1 1069 31.3
BcaB03g13185 Brassica carinata HOM05D004263 ORTHO05D004931 2.1e-114 418.7 1068 31.0
BraA06t24102Z Brassica rapa HOM05D004263 ORTHO05D004931 2.7e-114 418.3 1080 30.8
vmacro09293 Vaccinium macrocarpon HOM05D004263 ORTHO05D004931 2.7e-114 418.3 1095 30.4
AT1G12470 Arabidopsis thaliana HOM05D004263 ORTHO05D004931 3.6e-114 417.9 1067 31.1
FAN14G1228 Fragaria x ananassa HOM05D004263 ORTHO05D004931 3.6e-114 417.9 1086 30.7
Carub.0001s1218 Capsella rubella HOM05D004263 ORTHO05D004931 4.7e-114 417.5 1067 31.2
FAN02G3638 Fragaria x ananassa HOM05D004263 ORTHO05D004931 6.1e-114 417.2 1086 30.8
EL10As1g23122 Beta vulgaris HOM05D004263 ORTHO05D004931 1.8e-113 415.6 1074 30.5
A06p09160 Brassica napus HOM05D004263 ORTHO05D004931 1.8e-113 415.6 1068 31.0
FAN09G1275 Fragaria x ananassa HOM05D004263 ORTHO05D004931 6.8e-113 413.7 1086 30.8
Aa31LG1G2150 Aethionema arabicum HOM05D004263 ORTHO05D004931 8.8e-113 413.3 1071 31.4
BolC5t29815H Brassica oleracea HOM05D004263 ORTHO05D004931 1.2e-112 412.9 1065 30.7
Lsat_1_v5_gn_3_39980 Lactuca sativa HOM05D004263 ORTHO05D004931 4.4e-112 411.0 1077 31.6
A08p32810 Brassica napus HOM05D004263 ORTHO05D004931 1.3e-111 409.5 1083 30.4
Thecc.02G171500 Theobroma cacao HOM05D004263 ORTHO05D004931 1.3e-111 409.5 1069 30.5
Nn2g15850 Nelumbo nucifera HOM05D004263 ORTHO05D004931 1.7e-111 409.1 1029 31.1
Sabra13G0119200 Salix brachista HOM05D004263 ORTHO05D004931 2.2e-111 408.7 1080 30.3
BraA08t35204Z Brassica rapa HOM05D004263 ORTHO05D004931 2.8e-111 408.3 1085 30.3
Duzib248G0991 Durio zibethinus HOM05D004263 ORTHO05D004931 4.8e-111 407.5 941 32.4
Sc08g0004410 Simmondsia chinensis HOM05D004263 ORTHO05D004931 1.1e-110 406.4 988 31.5
HanXRQChr07g0200651 Helianthus annuus HOM05D004263 ORTHO05D004931 1.8e-110 405.6 1071 30.8
C05p10740 Brassica napus HOM05D004263 ORTHO05D004931 3.1e-110 404.8 1066 30.6
Cfa010655 Carpinus fangiana HOM05D004263 ORTHO05D004931 9.1e-110 403.3 1086 29.8
Oeu001693.1 Olea europaea HOM05D004263 ORTHO05D004931 2.0e-109 402.1 1063 30.2
DCAR_009724 Daucus carota HOM05D004263 ORTHO05D004931 5.0e-108 397.5 1064 30.4
Lj8C117G6 Lonicera japonica HOM05D004263 ORTHO05D004931 5.5e-107 394.0 940 32.0
Actinidia30490 Actinidia chinensis HOM05D004263 ORTHO05D004931 7.2e-107 393.7 871 33.1
unitig_0.g1433 Utricularia gibba HOM05D004263 ORTHO05D004931 9.5e-107 393.3 943 32.6
BcaC05g25186 Brassica carinata HOM05D004263 ORTHO05D004931 1.2e-106 392.9 946 31.8
ClCG02G001300 Citrullus lanatus HOM05D004263 ORTHO05D004931 1.2e-106 392.9 1117 29.5
BolC8t49173H Brassica oleracea HOM05D004263 ORTHO05D004931 1.0e-105 389.8 1115 29.3
Atru.chr6.3077 Acer truncatum HOM05D004263 ORTHO05D004931 4.0e-105 387.9 971 31.3
SMO239G0082 Selaginella moellendorffii HOM05D004263 ORTHO05D004931 8.9e-105 386.7 1093 29.3
Haze_13086 Corylus avellana HOM05D004263 ORTHO05D004931 1.2e-104 386.3 1167 28.7
Cpa.g.sc34.88 Carica papaya HOM05D004263 ORTHO05D004931 1.5e-104 386.0 824 34.1
CDE05G0585 Ceratophyllum demersum HOM05D004263 ORTHO05D004931 7.5e-104 383.6 1064 30.0
Rhsim04G0063000 Rhododendron simsii HOM05D004263 ORTHO05D004931 1.3e-103 382.9 813 33.5
MBI02_g13236_MAGBIO Magnolia biondii HOM05D004263 ORTHO05D004931 3.7e-103 381.3 811 33.7
MSTRG.11470 Avicennia marina HOM05D004263 ORTHO05D004931 1.1e-102 379.8 823 32.8
AUR62034472 Chenopodium quinoa HOM05D004263 ORTHO05D004931 1.4e-102 379.4 1067 29.2
Haze_03591 Corylus avellana HOM05D004263 ORTHO05D004931 3.5e-101 374.8 1107 29.0
Hma1.2p1_0565F.1_g179570 Hydrangea macrophylla HOM05D004263 ORTHO05D004931 4.5e-101 374.4 869 31.9
MELO3C018764.2 Cucumis melo HOM05D004263 ORTHO05D004931 2.3e-100 372.1 899 31.8
AagrBONN_evm.TU.Sc2ySwM_228.3812 Anthoceros agrestis HOM05D004263 ORTHO05D004931 5.8e-96 357.5 918 31.9
Medtr5g026090 Medicago truncatula HOM05D004263 ORTHO05D004931 1.3e-95 356.3 826 32.2
AUR62041769 Chenopodium quinoa HOM05D004263 ORTHO05D004931 8.3e-95 353.6 1067 28.5
MCO01G063 Micromonas commoda HOM05D004263 ORTHO05D004931 4.1e-94 351.3 575 37.7
Cfa014543 Carpinus fangiana HOM05D004263 ORTHO05D004931 3.5e-93 348.2 889 30.8
Zm00001eb412950 Zea mays HOM05D004263 ORTHO05D004931 1.1e-91 343.2 689 34.4
ATR0737G173 Amborella trichopoda HOM05D004263 ORTHO05D004931 3.1e-89 335.1 1030 28.6
Lj1C736G5 Lonicera japonica HOM05D004263 ORTHO05D004931 3.4e-88 331.6 786 32.3
Cre07.g328550 Chlamydomonas reinhardtii HOM05D004263 ORTHO05D004931 5.6e-83 314.3 976 30.5
Dinv23716 Davidia involucrata HOM05D004263 ORTHO05D004931 4.6e-77 294.7 636 33.5
CSS0039065 Camellia sinensis var. sinensis HOM05D004263 ORTHO05D004931 2.5e-75 288.9 755 31.1
Cfa022578 Carpinus fangiana HOM05D004263 ORTHO05D004931 9.9e-64 250.4 1067 25.4
Oeu001695.1 Olea europaea HOM05D004263 ORTHO05D004931 2.4e-62 245.7 520 33.5
Nitab4.5_0001514g0010 Nicotiana tabacum HOM05D004263 ORTHO05D004931 4.6e-61 241.5 670 29.1
QL08p037237 Quercus lobata HOM05D004263 ORTHO05D004931 1.3e-52 213.4 708 28.0
SHI10474 Sapria himalayana HOM05D004263 ORTHO05D004931 2.3e-52 212.6 661 28.7
Nitab4.5_0000025g0490 Nicotiana tabacum HOM05D004263 ORTHO05D004931 7.6e-48 197.6 633 27.8
TPR.G26159 Trifolium pratense HOM05D004263 ORTHO05D004931 2.9e-47 195.7 507 30.4
Nitab4.5_0000025g0510 Nicotiana tabacum HOM05D004263 ORTHO05D004931 9.3e-46 190.7 335 38.2
Nitab4.5_0001514g0020 Nicotiana tabacum HOM05D004263 ORTHO05D004931 1.2e-40 173.7 324 34.9
CBR_g50947 Chara braunii HOM05D004263 ORTHO05D004931 1.0e-39 170.6 275 39.3
CAN.G224.16 Capsicum annuum HOM05D004263 ORTHO05D004931 7.9e-37 161.0 289 37.0
VMungo1080G0385 Vigna mungo HOM05D004263 ORTHO05D004931 1.7e-31 143.3 447 28.2
CAN.G2148.2 Capsicum annuum HOM05D004263 ORTHO05D004931 2.6e-24 119.4 282 31.6
CBR_g40703 Chara braunii HOM05D004263 ORTHO05D004931 4.4e-19 102.1 454 24.9
Dinv23715 Davidia involucrata HOM05D004263 ORTHO05D004931 1.8e-17 96.7 337 26.1
MCO10G067 Micromonas commoda HOM05D004263 ORTHO05D004931 3.1e-17 95.9 466 26.8
CBR_g40701 Chara braunii HOM05D004263 ORTHO05D004931 5.0e-15 88.6 178 34.8
SEGI_16142 Sequoiadendron giganteum HOM05D004263 ORTHO05D004931 3.3e-11 75.9 87 46.0
Cpa.g.sc34.89 Carica papaya HOM05D004263 ORTHO05D004931 6.5e-07 61.6 175 28.6
TPR.G28496 Trifolium pratense HOM05D004086 ORTHO05D004641 1.1e-06 60.8 178 25.3
C09p48310 Brassica napus HOM05D005294 ORTHO05D006720 1.5e-06 60.5 126 35.7
BolC9t57681H Brassica oleracea HOM05D005294 ORTHO05D006720 7.2e-06 58.2 122 35.2


User provided reference genes

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