Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PRCOL_00001495 Prasinoderma coloniale HOM05D003945 ORTHO05D004625 0.0e+00 1746.5 870 100.0
PRCOL_00006675 Prasinoderma coloniale HOM05D003945 ORTHO05D004625 1.4e-48 199.1 735 29.5
Cre01.g001400 Chlamydomonas reinhardtii HOM05D003945 ORTHO05D004625 2.0e-31 142.1 681 27.0
MD08G1036300 Malus domestica HOM05D003945 ORTHO05D004625 1.5e-26 125.9 468 27.1
Mapoly0001s0355 Marchantia polymorpha HOM05D003945 ORTHO05D004625 1.5e-26 125.9 470 28.1
SEGI_23274 Sequoiadendron giganteum HOM05D003945 ORTHO05D004625 1.5e-26 125.9 489 28.8
PRCOL_00003766 Prasinoderma coloniale HOM05D003945 ORTHO05D004625 1.9e-26 125.6 648 26.9
Gorai.009G205100 Gossypium raimondii HOM05D003945 ORTHO05D004625 4.3e-26 124.4 469 28.4
FvH4_2g40290 Fragaria vesca HOM05D003945 ORTHO05D004625 7.3e-26 123.6 469 27.7
FAN27G0143 Fragaria x ananassa HOM05D003945 ORTHO05D004625 7.3e-26 123.6 469 27.7
Gohir.D05G199800 Gossypium hirsutum HOM05D003945 ORTHO05D004625 7.3e-26 123.6 469 28.1
QL02p007358 Quercus lobata HOM05D003945 ORTHO05D004625 7.3e-26 123.6 470 27.9
Prupe.1G383600 Prunus persica HOM05D003945 ORTHO05D004625 9.5e-26 123.2 469 27.5
RcHm_v2.0_Chr6g0300451 Rosa chinensis HOM05D003945 ORTHO05D004625 9.5e-26 123.2 469 27.7
Atru.chr13.549 Acer truncatum HOM05D003945 ORTHO05D004625 1.6e-25 122.5 462 27.7
Haze_17624 Corylus avellana HOM05D003945 ORTHO05D004625 1.6e-25 122.5 470 27.9
Manes.18G029900 Manihot esculenta HOM05D003945 ORTHO05D004625 1.6e-25 122.5 478 27.4
Pp3c15_10300 Physcomitrium patens HOM05D003945 ORTHO05D004625 1.6e-25 122.5 472 28.0
DCAR_019505 Daucus carota HOM05D003945 ORTHO05D004625 2.8e-25 121.7 470 27.9
AagrBONN_evm.TU.Sc2ySwM_228.1369 Anthoceros agrestis HOM05D003945 ORTHO05D004625 3.6e-25 121.3 494 27.9
Cc10_g03360 Coffea canephora HOM05D003945 ORTHO05D004625 4.7e-25 120.9 475 28.0
Gohir.D06G009400 Gossypium hirsutum HOM05D003945 ORTHO05D004625 4.7e-25 120.9 471 28.2
Gorai.010G012200 Gossypium raimondii HOM05D003945 ORTHO05D004625 4.7e-25 120.9 471 28.2
TAR381G0557 Trochodendron aralioides HOM05D003945 ORTHO05D004625 4.7e-25 120.9 470 27.7
Nn5g29493 Nelumbo nucifera HOM05D003945 ORTHO05D004625 6.2e-25 120.6 470 27.4
Thecc.08G022100 Theobroma cacao HOM05D003945 ORTHO05D004625 6.2e-25 120.6 471 28.2
PGR031G2694 Punica granatum HOM05D003945 ORTHO05D004625 8.1e-25 120.2 475 29.1
SEGI_40605 Sequoiadendron giganteum HOM05D003945 ORTHO05D004625 8.1e-25 120.2 470 27.7
THA.LOC104809128 Tarenaya hassleriana HOM05D003945 ORTHO05D004625 8.1e-25 120.2 471 28.0
FAN15G1095 Fragaria x ananassa HOM05D003945 ORTHO05D004625 1.1e-24 119.8 469 27.5
Cpa.g.sc64.47 Carica papaya HOM05D003945 ORTHO05D004625 1.4e-24 119.4 470 27.4
Cfa018443 Carpinus fangiana HOM05D003945 ORTHO05D004625 1.4e-24 119.4 470 27.7
Duzib093G0983 Durio zibethinus HOM05D003945 ORTHO05D004625 1.4e-24 119.4 473 28.1
Gohir.A06G012000 Gossypium hirsutum HOM05D003945 ORTHO05D004625 1.4e-24 119.4 471 28.2
Dinv36042 Davidia involucrata HOM05D003945 ORTHO05D004625 1.8e-24 119.0 469 27.5
FAN20G0651 Fragaria x ananassa HOM05D003945 ORTHO05D004625 1.8e-24 119.0 469 27.3
Ciclev10000250m.g Citrus clementina HOM05D003945 ORTHO05D004625 2.3e-24 118.6 474 27.4
CsaV3_2G028440 Cucumis sativus L. HOM05D003945 ORTHO05D004625 2.3e-24 118.6 471 27.6
Manes.05G163500 Manihot esculenta HOM05D003945 ORTHO05D004625 2.3e-24 118.6 435 27.6
PSO675G7084 Papaver somniferum HOM05D003945 ORTHO05D004625 2.3e-24 118.6 470 27.4
Sed0019202 Sechium edule HOM05D003945 ORTHO05D004625 2.3e-24 118.6 471 27.4
CiPaw.15G072600 Carya illinoinensis HOM05D003945 ORTHO05D004625 3.1e-24 118.2 470 27.4
Nn1g05109 Nelumbo nucifera HOM05D003945 ORTHO05D004625 3.1e-24 118.2 467 28.5
PSO541G5148 Papaver somniferum HOM05D003945 ORTHO05D004625 3.1e-24 118.2 470 27.4
Phvul.009G055900 Phaseolus vulgaris HOM05D003945 ORTHO05D004625 3.1e-24 118.2 469 27.7
Sed0018308 Sechium edule HOM05D003945 ORTHO05D004625 3.1e-24 118.2 471 27.4
Sc02g0006540 Simmondsia chinensis HOM05D003945 ORTHO05D004625 3.1e-24 118.2 470 28.1
Potri.002G133300 Populus trichocarpa HOM05D003945 ORTHO05D004625 5.2e-24 117.5 470 27.2
Zm00001eb056220 Zea mays HOM05D003945 ORTHO05D004625 5.2e-24 117.5 470 27.7
Lj5g0000532 Lotus japonicus HOM05D003945 ORTHO05D004625 6.8e-24 117.1 488 27.5
Lalb_Chr14g0369061 Lupinus albus HOM05D003945 ORTHO05D004625 6.8e-24 117.1 468 28.2
Peaxi162Scf00057g01112 Petunia axillaris HOM05D003945 ORTHO05D004625 6.8e-24 117.1 469 26.9
Pp3c9_8900 Physcomitrium patens HOM05D003945 ORTHO05D004625 6.8e-24 117.1 470 27.0
ATR0733G077 Amborella trichopoda HOM05D003945 ORTHO05D004625 8.9e-24 116.7 473 27.3
Phvul.001G016500 Phaseolus vulgaris HOM05D003945 ORTHO05D004625 8.9e-24 116.7 470 27.4
DCAR_012756 Daucus carota HOM05D003945 ORTHO05D004625 1.2e-23 116.3 471 27.2
Dinv39382 Davidia involucrata HOM05D003945 ORTHO05D004625 1.2e-23 116.3 471 27.6
Eucgr.A00488 Eucalyptus grandis HOM05D003945 ORTHO05D004625 1.2e-23 116.3 468 27.6
Glyma.06G034400 Glycine max HOM05D003945 ORTHO05D004625 1.2e-23 116.3 468 27.6
Lsat_1_v5_gn_1_18561 Lactuca sativa HOM05D003945 ORTHO05D004625 1.2e-23 116.3 469 27.3
Nitab4.5_0000110g0200 Nicotiana tabacum HOM05D003945 ORTHO05D004625 1.2e-23 116.3 482 26.8
Actinidia22566 Actinidia chinensis HOM05D003945 ORTHO05D004625 1.5e-23 115.9 470 27.2
TWI12G1285 Tripterygium wilfordii HOM05D003945 ORTHO05D004625 1.5e-23 115.9 470 27.7
Aqoxy6G01012 Aquilegia oxysepala HOM05D003945 ORTHO05D004625 2.6e-23 115.2 469 26.7
Nitab4.5_0003588g0030 Nicotiana tabacum HOM05D003945 ORTHO05D004625 2.6e-23 115.2 479 26.9
SalBow8G1011 Salvia bowleyana HOM05D003945 ORTHO05D004625 2.6e-23 115.2 470 27.7
SalBow8G4281 Salvia bowleyana HOM05D003945 ORTHO05D004625 2.6e-23 115.2 470 27.7
SGA_v2.0_scaffold48G18049 Striga asiatica HOM05D003945 ORTHO05D004625 2.6e-23 115.2 510 27.8
GSVIVG01009647001 Vitis vinifera HOM05D003945 ORTHO05D004625 2.6e-23 115.2 470 26.8
arahy.Tifrunner.gnm1.ann1.6F7CQG Arachis hypogaea HOM05D003945 ORTHO05D004625 3.4e-23 114.8 467 27.6
arahy.Tifrunner.gnm1.ann1.SKM2GN Arachis hypogaea HOM05D003945 ORTHO05D004625 3.4e-23 114.8 467 27.6
Glyma.14G077200 Glycine max HOM05D003945 ORTHO05D004625 3.4e-23 114.8 490 27.8
Glyma.17G248400 Glycine max HOM05D003945 ORTHO05D004625 3.4e-23 114.8 474 27.6
MBI16_g13147_MAGBIO Magnolia biondii HOM05D003945 ORTHO05D004625 3.4e-23 114.8 471 28.0
Sabra14G0029800 Salix brachista HOM05D003945 ORTHO05D004625 3.4e-23 114.8 470 27.7
CiPaw.16G054000 Carya illinoinensis HOM05D003945 ORTHO05D004625 4.4e-23 114.4 475 27.2
Lalb_Chr24g0399061 Lupinus albus HOM05D003945 ORTHO05D004625 4.4e-23 114.4 470 27.7
Sopen04g033470 Solanum pennellii HOM05D003945 ORTHO05D004625 4.4e-23 114.4 470 27.2
AUR62033857 Chenopodium quinoa HOM05D003945 ORTHO05D004625 5.8e-23 114.0 471 27.0
TWI56G0898 Tripterygium wilfordii HOM05D003945 ORTHO05D004625 5.8e-23 114.0 470 27.0
CDE04G0514 Ceratophyllum demersum HOM05D003945 ORTHO05D004625 7.5e-23 113.6 470 27.0
ECA247G1056 Erigeron canadensis HOM05D003945 ORTHO05D004625 9.9e-23 113.2 468 27.1
Lj4C783T17 Lonicera japonica HOM05D003945 ORTHO05D004625 9.9e-23 113.2 413 27.8
Psat6g032680 Pisum sativum HOM05D003945 ORTHO05D004625 9.9e-23 113.2 468 27.4
Os03g0731500 Oryza sativa ssp. japonica HOM05D003945 ORTHO05D004625 1.3e-22 112.8 470 26.6
Potri.014G040800 Populus trichocarpa HOM05D003945 ORTHO05D004625 1.3e-22 112.8 470 27.0
PGSC0003DMG400016879 Solanum tuberosum HOM05D003945 ORTHO05D004625 1.3e-22 112.8 470 27.0
Duzib116G0373 Durio zibethinus HOM05D003945 ORTHO05D004625 1.7e-22 112.5 471 27.6
HanXRQChr09g0268441 Helianthus annuus HOM05D003945 ORTHO05D004625 1.7e-22 112.5 469 27.3
VMungo0647G1838 Vigna mungo HOM05D003945 ORTHO05D004625 1.7e-22 112.5 472 27.1
EL10Ac1g01765 Beta vulgaris HOM05D003945 ORTHO05D004625 2.2e-22 112.1 470 26.4
ECA232G0159 Erigeron canadensis HOM05D003945 ORTHO05D004625 2.2e-22 112.1 467 27.2
HanXRQChr04g0104741 Helianthus annuus HOM05D003945 ORTHO05D004625 2.2e-22 112.1 489 26.4
Solyc04g079900.3 Solanum lycopersicum HOM05D003945 ORTHO05D004625 2.2e-22 112.1 467 27.2
Duzib041G0798 Durio zibethinus HOM05D003945 ORTHO05D004625 2.9e-22 111.7 470 27.0
Glyma.04G034200 Glycine max HOM05D003945 ORTHO05D004625 2.9e-22 111.7 471 27.6
Lsat_1_v5_gn_4_119740 Lactuca sativa HOM05D003945 ORTHO05D004625 2.9e-22 111.7 470 26.8
Aa31LG9G12670 Aethionema arabicum HOM05D003945 ORTHO05D004625 3.7e-22 111.3 470 26.6
Thhalv10022547m.g Eutrema salsugineum HOM05D003945 ORTHO05D004625 3.7e-22 111.3 470 26.8
Sabra02G0104100 Salix brachista HOM05D003945 ORTHO05D004625 3.7e-22 111.3 471 26.3
THA.LOC104806880 Tarenaya hassleriana HOM05D003945 ORTHO05D004625 3.7e-22 111.3 471 27.0
CSS0008782 Camellia sinensis var. sinensis HOM05D003945 ORTHO05D004625 4.9e-22 110.9 487 26.9
Lalb_Chr22g0355401 Lupinus albus HOM05D003945 ORTHO05D004625 6.4e-22 110.5 472 27.1
SGA_v2.0_scaffold24G10266 Striga asiatica HOM05D003945 ORTHO05D004625 6.4e-22 110.5 334 29.3
CAN.G371.130 Capsicum annuum HOM05D003945 ORTHO05D004625 8.3e-22 110.2 467 26.6
HanXRQChr00c0117g0571731 Helianthus annuus HOM05D003945 ORTHO05D004625 8.3e-22 110.2 470 27.2
CDE07G1908 Ceratophyllum demersum HOM05D003945 ORTHO05D004625 1.4e-21 109.4 474 26.6
Medtr1g021950 Medicago truncatula HOM05D003945 ORTHO05D004625 1.9e-21 109.0 470 27.0
Carub.0008s0641 Capsella rubella HOM05D003945 ORTHO05D004625 2.4e-21 108.6 470 26.4
Lj1g0024333 Lotus japonicus HOM05D003945 ORTHO05D004625 2.4e-21 108.6 467 26.6
Medtr3g111630 Medicago truncatula HOM05D003945 ORTHO05D004625 2.4e-21 108.6 471 27.4
Psat5g018920 Pisum sativum HOM05D003945 ORTHO05D004625 2.4e-21 108.6 469 26.7
CANSAT25G0653 Cannabis sativa HOM05D003945 ORTHO05D004625 3.2e-21 108.2 474 27.0
Gohir.A05G196700 Gossypium hirsutum HOM05D003945 ORTHO05D004625 3.2e-21 108.2 395 27.8
AL8G18650 Arabidopsis lyrata HOM05D003945 ORTHO05D004625 4.1e-21 107.8 465 26.7
AT5G42620 Arabidopsis thaliana HOM05D003945 ORTHO05D004625 4.1e-21 107.8 465 26.7
MSTRG.24306 Avicennia marina HOM05D003945 ORTHO05D004625 4.1e-21 107.8 466 27.0
Gorai.009G274100 Gossypium raimondii HOM05D003945 ORTHO05D004625 4.1e-21 107.8 471 27.0
vmacro21611 Vaccinium macrocarpon HOM05D003945 ORTHO05D004625 4.1e-21 107.8 467 25.7
ClCG08G015350 Citrullus lanatus HOM05D003945 ORTHO05D004625 5.4e-21 107.5 330 29.1
BcaC02g10772 Brassica carinata HOM05D003945 ORTHO05D004625 7.1e-21 107.1 439 26.2
C04p25260 Brassica napus HOM05D003945 ORTHO05D004625 7.1e-21 107.1 439 26.2
BolC4t24032H Brassica oleracea HOM05D003945 ORTHO05D004625 7.1e-21 107.1 439 26.2
AUR62041666 Chenopodium quinoa HOM05D003945 ORTHO05D004625 7.1e-21 107.1 496 26.2
Sp2g07000 Schrenkiella parvula HOM05D003945 ORTHO05D004625 7.1e-21 107.1 465 26.5
SpUn0022_0010 Schrenkiella parvula HOM05D003945 ORTHO05D004625 7.1e-21 107.1 465 26.5
SpUn0026_0070 Schrenkiella parvula HOM05D003945 ORTHO05D004625 7.1e-21 107.1 465 26.5
SpUn0029_0030 Schrenkiella parvula HOM05D003945 ORTHO05D004625 7.1e-21 107.1 465 26.5
BcaC06g31752 Brassica carinata HOM05D003945 ORTHO05D004625 9.2e-21 106.7 470 26.6
Migut.C00687 Erythranthe guttata HOM05D003945 ORTHO05D004625 9.2e-21 106.7 469 26.2
Lj4A44G44 Lonicera japonica HOM05D003945 ORTHO05D004625 9.2e-21 106.7 476 27.1
Oeu009604.1 Olea europaea HOM05D003945 ORTHO05D004625 9.2e-21 106.7 485 27.2
Ah.11g043210 Amaranthus hybridus HOM05D003945 ORTHO05D004625 1.2e-20 106.3 396 27.8
CSS0002441 Camellia sinensis var. sinensis HOM05D003945 ORTHO05D004625 1.2e-20 106.3 396 27.8
CARHR181510 Cardamine hirsuta HOM05D003945 ORTHO05D004625 1.2e-20 106.3 465 26.0
MSTRG.1299 Avicennia marina HOM05D003945 ORTHO05D004625 1.6e-20 105.9 471 26.3
MELO3C010920.2 Cucumis melo HOM05D003945 ORTHO05D004625 1.6e-20 105.9 396 27.5
A06p48280 Brassica napus HOM05D003945 ORTHO05D004625 2.1e-20 105.5 470 26.6
BraA06t27697Z Brassica rapa HOM05D003945 ORTHO05D004625 2.1e-20 105.5 470 26.6
Rhsim06G0036600 Rhododendron simsii HOM05D003945 ORTHO05D004625 2.1e-20 105.5 392 26.0
TPR.G12378 Trifolium pratense HOM05D003945 ORTHO05D004625 4.6e-20 104.4 465 27.1
Gohir.A05G260400 Gossypium hirsutum HOM05D003945 ORTHO05D004625 7.8e-20 103.6 467 26.3
Gohir.D05G262200 Gossypium hirsutum HOM05D003945 ORTHO05D004625 3.9e-19 101.3 469 25.8
Ca_13337_v3 Cicer arietinum L. HOM05D003945 ORTHO05D004625 5.1e-19 100.9 449 26.7
Oeu019083.2 Olea europaea HOM05D003945 ORTHO05D004625 8.6e-19 100.1 469 26.9
TPR.G15756 Trifolium pratense HOM05D003945 ORTHO05D004625 1.1e-18 99.8 501 25.5
Hund17646 Selenicereus undatus HOM05D003945 ORTHO05D004625 1.5e-18 99.4 467 25.3
VMungo1309G1712 Vigna mungo HOM05D003945 ORTHO05D004625 1.5e-18 99.4 472 26.3
SHI08218 Sapria himalayana HOM05D003945 ORTHO05D004625 1.2e-17 96.3 390 27.4
Ca_15527_v3 Cicer arietinum L. HOM05D003945 ORTHO05D004625 4.0e-16 91.3 446 26.5
COL.COLO4_26375 Corchorus olitorius HOM05D003945 ORTHO05D004625 5.2e-16 90.9 330 27.6
CBR_g32472 Chara braunii HOM05D000019 ORTHO05D000002 6.4e-14 84.0 335 24.2
CBR_g38919 Chara braunii HOM05D000019 ORTHO05D000353 2.3e-11 75.5 344 25.9
unitig_899.g15618 Utricularia gibba HOM05D003945 ORTHO05D004625 3.9e-11 74.7 270 27.4
TAR625G0556 Trochodendron aralioides HOM05D003945 ORTHO05D004625 2.6e-07 62.0 181 30.9
Actinidia15302 Actinidia chinensis HOM05D003945 ORTHO05D004625 2.2e-06 58.9 178 30.9
TAR625G1327 Trochodendron aralioides HOM05D003945 ORTHO05D004625 8.4e-06 57.0 171 31.0


User provided reference genes

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