Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PRCOL_00000896 Prasinoderma coloniale HOM05D003895 ORTHO05D004723 0.0e+00 1455.7 721 100.0
Mapoly0035s0052 Marchantia polymorpha HOM05D003895 ORTHO05D004723 3.1e-256 888.6 719 61.5
SMO174G0028 Selaginella moellendorffii HOM05D003895 ORTHO05D004723 4.3e-250 868.2 710 60.1
CBR_g19728 Chara braunii HOM05D003895 ORTHO05D004723 1.9e-245 852.8 739 57.9
MCO17G006 Micromonas commoda HOM05D003895 ORTHO05D004723 2.5e-245 852.4 709 59.9
SEGI_31460 Sequoiadendron giganteum HOM05D003895 ORTHO05D004723 2.5e-245 852.4 702 59.5
Sp1g40750 Schrenkiella parvula HOM05D003895 ORTHO05D004723 3.8e-238 828.6 702 57.8
TWI60G1173 Tripterygium wilfordii HOM05D003895 ORTHO05D004723 5.0e-238 828.2 702 58.5
DCAR_006502 Daucus carota HOM05D003895 ORTHO05D004723 6.5e-238 827.8 702 57.8
Ciclev10024991m.g Citrus clementina HOM05D003895 ORTHO05D004723 1.9e-237 826.2 702 58.5
AL1G63080 Arabidopsis lyrata HOM05D003895 ORTHO05D004723 5.5e-237 824.7 702 57.5
ATR1098G082 Amborella trichopoda HOM05D003895 ORTHO05D004723 9.4e-237 823.9 717 56.8
Ciclev10019024m.g Citrus clementina HOM05D003895 ORTHO05D004723 9.4e-237 823.9 702 58.4
Carub.0001s4358 Capsella rubella HOM05D003895 ORTHO05D004723 1.2e-236 823.5 702 57.4
AT1G55090 Arabidopsis thaliana HOM05D003895 ORTHO05D004723 1.6e-236 823.2 702 57.4
BolC6t36080H Brassica oleracea HOM05D003895 ORTHO05D004723 3.6e-236 822.0 702 57.5
CARHR044680 Cardamine hirsuta HOM05D003895 ORTHO05D004723 7.9e-236 820.8 702 57.3
A06p00400 Brassica napus HOM05D003895 ORTHO05D004723 1.0e-235 820.5 702 57.4
Thhalv10011266m.g Eutrema salsugineum HOM05D003895 ORTHO05D004723 1.0e-235 820.5 702 57.1
BraA06t23255Z Brassica rapa HOM05D003895 ORTHO05D004723 1.4e-235 820.1 702 57.4
Aa31LG2G1550 Aethionema arabicum HOM05D003895 ORTHO05D004723 2.3e-235 819.3 705 57.2
C06p10070 Brassica napus HOM05D003895 ORTHO05D004723 2.3e-235 819.3 702 57.4
Eucgr.E01025 Eucalyptus grandis HOM05D003895 ORTHO05D004723 2.3e-235 819.3 709 57.0
GSVIVG01019608001 Vitis vinifera HOM05D003895 ORTHO05D004723 2.3e-235 819.3 715 57.8
Actinidia04389 Actinidia chinensis HOM05D003895 ORTHO05D004723 3.9e-235 818.5 707 58.0
BcaB07g33238 Brassica carinata HOM05D003895 ORTHO05D004723 5.1e-235 818.1 702 57.3
PGR042G2513 Punica granatum HOM05D003895 ORTHO05D004723 8.8e-235 817.4 702 58.0
SMO358G0326 Selaginella moellendorffii HOM05D003895 ORTHO05D004723 1.1e-234 817.0 702 57.5
Aqoxy2G01051 Aquilegia oxysepala HOM05D003895 ORTHO05D004723 1.5e-234 816.6 702 57.7
BcaB04g17002 Brassica carinata HOM05D003895 ORTHO05D004723 1.5e-234 816.6 702 57.7
BcaC08g43605 Brassica carinata HOM05D003895 ORTHO05D004723 1.5e-234 816.6 702 57.4
MELO3C005756.2 Cucumis melo HOM05D003895 ORTHO05D004723 1.5e-234 816.6 705 57.9
RcHm_v2.0_Chr7g0186311 Rosa chinensis HOM05D003895 ORTHO05D004723 1.5e-234 816.6 705 58.2
CANSAT54G0301 Cannabis sativa HOM05D003895 ORTHO05D004723 2.0e-234 816.2 702 58.1
COL.COLO4_10753 Corchorus olitorius HOM05D003895 ORTHO05D004723 2.0e-234 816.2 705 57.3
MSTRG.13762 Avicennia marina HOM05D003895 ORTHO05D004723 3.3e-234 815.5 709 57.5
THA.LOC104823616 Tarenaya hassleriana HOM05D003895 ORTHO05D004723 3.3e-234 815.5 704 57.5
TAR629G1064 Trochodendron aralioides HOM05D003895 ORTHO05D004723 4.4e-234 815.1 702 57.8
Cc05_g02370 Coffea canephora HOM05D003895 ORTHO05D004723 5.7e-234 814.7 705 58.0
Manes.02G005900 Manihot esculenta HOM05D003895 ORTHO05D004723 9.7e-234 813.9 705 57.6
FvH4_5g11490 Fragaria vesca HOM05D003895 ORTHO05D004723 1.3e-233 813.5 705 57.7
Gorai.004G131300 Gossypium raimondii HOM05D003895 ORTHO05D004723 1.7e-233 813.1 721 56.2
HanXRQChr03g0083671 Helianthus annuus HOM05D003895 ORTHO05D004723 1.7e-233 813.1 717 56.8
Nn3g20296 Nelumbo nucifera HOM05D003895 ORTHO05D004723 1.7e-233 813.1 702 57.3
PSO170G0459 Papaver somniferum HOM05D003895 ORTHO05D004723 1.7e-233 813.1 702 57.5
Solyc08g082830.3 Solanum lycopersicum HOM05D003895 ORTHO05D004723 1.7e-233 813.1 702 58.0
Sopen08g031060 Solanum pennellii HOM05D003895 ORTHO05D004723 1.7e-233 813.1 702 58.0
arahy.Tifrunner.gnm1.ann1.M62N24 Arachis hypogaea HOM05D003895 ORTHO05D004723 2.2e-233 812.8 698 57.9
CiPaw.11G115900 Carya illinoinensis HOM05D003895 ORTHO05D004723 2.2e-233 812.8 706 57.2
arahy.Tifrunner.gnm1.ann1.68E5M7 Arachis hypogaea HOM05D003895 ORTHO05D004723 2.8e-233 812.4 702 57.5
FAN08G0955 Fragaria x ananassa HOM05D003895 ORTHO05D004723 2.8e-233 812.4 705 57.7
FAN18G2619 Fragaria x ananassa HOM05D003895 ORTHO05D004723 2.8e-233 812.4 705 57.6
FAN18G3428 Fragaria x ananassa HOM05D003895 ORTHO05D004723 2.8e-233 812.4 705 57.6
SalBow2G2362 Salvia bowleyana HOM05D003895 ORTHO05D004723 4.8e-233 811.6 702 57.3
PGSC0003DMG400012128 Solanum tuberosum HOM05D003895 ORTHO05D004723 4.8e-233 811.6 702 58.0
FAN04G2440 Fragaria x ananassa HOM05D003895 ORTHO05D004723 6.3e-233 811.2 705 57.4
Nitab4.5_0002367g0210 Nicotiana tabacum HOM05D003895 ORTHO05D004723 8.2e-233 810.8 702 57.3
Hund14202 Selenicereus undatus HOM05D003895 ORTHO05D004723 8.2e-233 810.8 702 57.5
HPP92_025338 Vanilla planifolia HOM05D003895 ORTHO05D004723 1.1e-232 810.4 710 56.3
Cfa011961 Carpinus fangiana HOM05D003895 ORTHO05D004723 1.8e-232 809.7 706 56.7
BcaC01g01456 Brassica carinata HOM05D003895 ORTHO05D004723 2.4e-232 809.3 702 57.0
Migut.E00651 Erythranthe guttata HOM05D003895 ORTHO05D004723 2.4e-232 809.3 702 56.6
A08p01020 Brassica napus HOM05D003895 ORTHO05D004723 3.1e-232 808.9 702 56.7
Cc08_g16460 Coffea canephora HOM05D003895 ORTHO05D004723 3.1e-232 808.9 705 57.4
Duzib068G0704 Durio zibethinus HOM05D003895 ORTHO05D004723 3.1e-232 808.9 705 56.7
Potri.001G087400 Populus trichocarpa HOM05D003895 ORTHO05D004723 3.1e-232 808.9 702 57.4
VMungo0251G3777 Vigna mungo HOM05D003895 ORTHO05D004723 3.1e-232 808.9 702 57.4
Lj4g0018300 Lotus japonicus HOM05D003895 ORTHO05D004723 4.1e-232 808.5 702 57.5
Potri.003G143700 Populus trichocarpa HOM05D003895 ORTHO05D004723 4.1e-232 808.5 702 57.1
Cpa.g.sc15.11 Carica papaya HOM05D003895 ORTHO05D004723 5.3e-232 808.1 714 57.3
Gohir.D08G124600 Gossypium hirsutum HOM05D003895 ORTHO05D004723 5.3e-232 808.1 721 56.0
Nitab4.5_0002439g0120 Nicotiana tabacum HOM05D003895 ORTHO05D004723 7.0e-232 807.7 702 57.1
Cre10.g435250 Chlamydomonas reinhardtii HOM05D003895 ORTHO05D004723 1.2e-231 807.0 796 54.4
TPR.G3395 Trifolium pratense HOM05D003895 ORTHO05D004723 1.2e-231 807.0 705 56.9
Thecc.03G303200 Theobroma cacao HOM05D003895 ORTHO05D004723 1.6e-231 806.6 705 56.3
HanXRQChr06g0166321 Helianthus annuus HOM05D003895 ORTHO05D004723 2.6e-231 805.8 717 56.3
Psat7g023560 Pisum sativum HOM05D003895 ORTHO05D004723 2.6e-231 805.8 702 57.1
Ca_17453_v3 Cicer arietinum L. HOM05D003895 ORTHO05D004723 3.5e-231 805.4 702 57.4
Oeu009988.1 Olea europaea HOM05D003895 ORTHO05D004723 3.5e-231 805.4 702 56.6
Phvul.002G328900 Phaseolus vulgaris HOM05D003895 ORTHO05D004723 3.5e-231 805.4 702 56.8
Lj4g0016220 Lotus japonicus HOM05D003895 ORTHO05D004723 5.9e-231 804.7 702 57.4
CAN.G567.61 Capsicum annuum HOM05D003895 ORTHO05D004723 7.7e-231 804.3 702 57.5
QL02p029300 Quercus lobata HOM05D003895 ORTHO05D004723 7.7e-231 804.3 709 56.3
EL10Ac5g12963 Beta vulgaris HOM05D003895 ORTHO05D004723 1.3e-230 803.5 702 56.3
Glyma.05G219500 Glycine max HOM05D003895 ORTHO05D004723 1.3e-230 803.5 702 57.8
ECA240G1010 Erigeron canadensis HOM05D003895 ORTHO05D004723 2.2e-230 802.7 717 56.1
Medtr8g099885 Medicago truncatula HOM05D003895 ORTHO05D004723 8.5e-230 800.8 702 57.1
Sabra01G0063700 Salix brachista HOM05D003895 ORTHO05D004723 8.5e-230 800.8 702 56.8
CSS0003453 Camellia sinensis var. sinensis HOM05D003895 ORTHO05D004723 1.9e-229 799.7 702 57.3
MD06G1113100 Malus domestica HOM05D003895 ORTHO05D004723 1.9e-229 799.7 713 55.7
MD14G1134200 Malus domestica HOM05D003895 ORTHO05D004723 1.9e-229 799.7 702 56.6
Lalb_Chr16g0390761 Lupinus albus HOM05D003895 ORTHO05D004723 2.5e-229 799.3 702 57.0
Prupe.5G126000 Prunus persica HOM05D003895 ORTHO05D004723 4.2e-229 798.5 702 56.4
Pp3c17_21910 Physcomitrium patens HOM05D003895 ORTHO05D004723 5.5e-229 798.1 636 62.9
CSS0024936 Camellia sinensis var. sinensis HOM05D003895 ORTHO05D004723 7.2e-229 797.7 702 57.1
Rhsim07G0079800 Rhododendron simsii HOM05D003895 ORTHO05D004723 7.2e-229 797.7 702 56.8
AUR62029097 Chenopodium quinoa HOM05D003895 ORTHO05D004723 2.1e-228 796.2 704 56.1
Sabra03G0104100 Salix brachista HOM05D003895 ORTHO05D004723 6.1e-228 794.7 760 53.9
TPR.G18245 Trifolium pratense HOM05D003895 ORTHO05D004723 8.0e-228 794.3 702 56.7
Zm00001eb094700 Zea mays HOM05D003895 ORTHO05D004723 5.2e-227 791.6 718 55.6
AUR62015016 Chenopodium quinoa HOM05D003895 ORTHO05D004723 8.8e-227 790.8 717 55.4
MBI02_g10555_MAGBIO Magnolia biondii HOM05D003895 ORTHO05D004723 2.2e-225 786.2 702 55.8
Haze_09120 Corylus avellana HOM05D003895 ORTHO05D004723 3.7e-225 785.4 721 55.2
Psat7g023520 Pisum sativum HOM05D003895 ORTHO05D004723 1.1e-224 783.9 702 55.8
TPR.G3413 Trifolium pratense HOM05D003895 ORTHO05D004723 1.6e-223 780.0 702 54.8
vmacro13870 Vaccinium macrocarpon HOM05D003895 ORTHO05D004723 2.7e-223 779.2 744 54.4
BolC3t21537H Brassica oleracea HOM05D003895 ORTHO05D004723 1.7e-222 776.5 714 54.9
BraA08t32154Z Brassica rapa HOM05D003895 ORTHO05D004723 3.8e-222 775.4 713 55.0
C03p92220 Brassica napus HOM05D003895 ORTHO05D004723 5.0e-222 775.0 714 54.8
vmacro10679 Vaccinium macrocarpon HOM05D003895 ORTHO05D004723 5.0e-222 775.0 749 53.4
vmacro22441 Vaccinium macrocarpon HOM05D003895 ORTHO05D004723 5.0e-222 775.0 749 53.4
PSO339G2482 Papaver somniferum HOM05D003895 ORTHO05D004723 6.5e-222 774.6 702 54.7
Oeu059576.4 Olea europaea HOM05D003895 ORTHO05D004723 2.5e-221 772.7 754 52.4
Lsat_1_v5_gn_6_83601 Lactuca sativa HOM05D003895 ORTHO05D004723 4.0e-219 765.4 717 55.0
AagrBONN_evm.TU.Sc2ySwM_228.4970 Anthoceros agrestis HOM05D003895 ORTHO05D004723 7.5e-218 761.1 629 59.3
Peaxi162Scf00074g00431 Petunia axillaris HOM05D003895 ORTHO05D004723 2.2e-217 759.6 702 55.3
Lj2C160T5 Lonicera japonica HOM05D003895 ORTHO05D004723 3.1e-216 755.7 702 55.0
unitig_21.g20891 Utricularia gibba HOM05D003895 ORTHO05D004723 3.1e-216 755.7 713 54.4
ClCG01G001820 Citrullus lanatus HOM05D003895 ORTHO05D004723 1.2e-215 753.8 803 49.8
Sc01g0010470 Simmondsia chinensis HOM05D003895 ORTHO05D004723 7.7e-215 751.1 677 56.0
Glyma.08G025800 Glycine max HOM05D003895 ORTHO05D004723 1.5e-213 746.9 673 56.6
EL10Ac5g12472 Beta vulgaris HOM05D003895 ORTHO05D004723 4.4e-210 735.3 709 53.2
CsaV3_5G001970 Cucumis sativus L. HOM05D003895 ORTHO05D004723 1.3e-209 733.8 650 56.9
PSO017G1958 Papaver somniferum HOM05D003895 ORTHO05D004723 1.8e-208 729.9 702 53.4
SGA_v2.0_scaffold295G47513 Striga asiatica HOM05D003895 ORTHO05D004723 3.1e-208 729.2 702 53.4
Sed0021355 Sechium edule HOM05D003895 ORTHO05D004723 7.3e-197 691.4 629 56.0
Hma1.2p1_1835F.1_g304665 Hydrangea macrophylla HOM05D003895 ORTHO05D004723 4.0e-195 685.6 629 55.8
Cfa024512 Carpinus fangiana HOM05D003895 ORTHO05D004723 3.7e-193 679.1 704 49.9
Manes.02G005800 Manihot esculenta HOM05D003895 ORTHO05D004723 3.9e-190 669.1 706 50.4
Ah.12g052950 Amaranthus hybridus HOM05D003895 ORTHO05D004723 3.7e-185 652.5 717 50.1
FAN13G0619 Fragaria x ananassa HOM05D003895 ORTHO05D004723 4.6e-183 645.6 705 48.7
Dinv34692 Davidia involucrata HOM05D003895 ORTHO05D004723 1.3e-182 644.0 598 55.4
AUR62019884 Chenopodium quinoa HOM05D003895 ORTHO05D004723 3.6e-180 636.0 703 48.4
Os07g0167100 Oryza sativa ssp. japonica HOM05D003895 ORTHO05D004723 5.2e-179 632.1 548 59.5
Gohir.A08G111660 Gossypium hirsutum HOM05D003895 ORTHO05D004723 1.6e-156 557.4 496 57.9
Migut.E01630 Erythranthe guttata HOM05D003895 ORTHO05D004723 6.1e-127 459.1 511 47.4
Hma1.2p1_0077F.1_g039630 Hydrangea macrophylla HOM05D003895 ORTHO05D004723 2.6e-125 453.8 418 54.8
MBI02_g43672_MAGBIO Magnolia biondii HOM05D003895 ORTHO05D004723 1.3e-113 414.8 431 49.9
PSO210G1536 Papaver somniferum HOM05D003895 ORTHO05D004723 2.0e-106 391.0 369 52.8
Aqoxy456s001 Aquilegia oxysepala HOM05D003895 ORTHO05D004723 1.5e-96 358.2 314 59.9
MBI05_g40947_MAGBIO Magnolia biondii HOM05D003895 ORTHO05D004723 3.6e-95 353.6 315 56.5
AUR62007020 Chenopodium quinoa HOM05D003895 ORTHO05D004723 6.8e-94 349.4 276 61.2
MBI15_g06349_MAGBIO Magnolia biondii HOM05D003895 ORTHO05D004723 1.4e-83 315.1 312 53.2
ECA246G1101 Erigeron canadensis HOM05D003895 ORTHO05D004723 1.7e-81 308.1 304 53.9
MBI05_g43497_MAGBIO Magnolia biondii HOM05D003895 ORTHO05D004723 1.9e-80 304.7 276 55.4
Haze_09105 Corylus avellana HOM05D003895 ORTHO05D004723 4.9e-68 263.5 368 45.4
Psat7g023400 Pisum sativum HOM05D003895 ORTHO05D004723 5.6e-64 250.0 368 42.1
SalBow2G1745 Salvia bowleyana HOM05D003895 ORTHO05D004723 5.2e-62 243.4 335 43.6
MBI05_g40946_MAGBIO Magnolia biondii HOM05D003895 ORTHO05D004723 4.0e-54 217.2 223 52.0
Gohir.A08G111640 Gossypium hirsutum HOM05D003895 ORTHO05D004723 3.5e-50 204.1 182 48.4
SalBow2G2695 Salvia bowleyana HOM05D003895 ORTHO05D004723 6.6e-49 199.9 213 48.4
AagrBONN_evm.TU.Sc2ySwM_228.4951 Anthoceros agrestis HOM05D003895 ORTHO05D004723 4.8e-47 193.7 219 43.8
BcaB04g17000 Brassica carinata HOM05D003895 ORTHO05D004723 4.0e-46 190.7 182 53.3
BcaB04g16999 Brassica carinata HOM05D003895 ORTHO05D004723 1.0e-41 176.0 168 54.8
SalBow2G0791 Salvia bowleyana HOM05D003895 ORTHO05D004723 2.3e-41 174.9 183 45.9
arahy.Tifrunner.gnm1.ann1.RT27P1 Arachis hypogaea HOM05D003895 ORTHO05D004723 7.4e-32 143.3 368 33.7
DCAR_006503 Daucus carota HOM05D001368 ORTHO05D003846 3.5e-26 124.4 140 48.6
BcaB04g17001 Brassica carinata HOM05D003895 ORTHO05D004723 1.1e-24 119.4 168 42.9
BcaB05g22068 Brassica carinata HOM05D003895 ORTHO05D004723 1.5e-21 109.0 101 46.5
BcaB01g00975 Brassica carinata HOM05D003895 ORTHO05D004723 1.7e-20 105.5 118 44.1
BcaC01g01457 Brassica carinata HOM05D003895 ORTHO05D004723 6.5e-20 103.6 96 49.0
MBI15_g06350_MAGBIO Magnolia biondii HOM05D000011 ORTHO05D000018 6.1e-18 97.1 76 59.2
BcaB01g02352 Brassica carinata HOM05D003895 ORTHO05D004723 2.2e-15 88.6 139 36.0
Sopen06g027550 Solanum pennellii HOM05D003895 ORTHO05D004723 1.5e-13 82.4 166 34.3
Nitab4.5_0000974g0050 Nicotiana tabacum HOM05D003895 ORTHO05D285369 7.7e-13 80.1 106 42.5
BcaB04g16998 Brassica carinata HOM05D003895 ORTHO05D004723 3.2e-11 74.7 40 72.5
CARHR106400 Cardamine hirsuta HOM05D003895 ORTHO05D004723 1.8e-09 68.9 48 58.3
CARHR260480 Cardamine hirsuta HOM05D003895 ORTHO05D004723 8.8e-09 66.6 41 65.9
Lj4g0022111 Lotus japonicus HOM05D019175 ORTHO05D018974 2.6e-08 65.1 91 44.0
Nitab4.5_0001308g0060 Nicotiana tabacum HOM05D003895 ORTHO05D282403 3.3e-08 64.7 79 45.6
Solyc06g071240.3 Solanum lycopersicum HOM05D003895 ORTHO05D004723 1.3e-07 62.8 137 34.3
Nitab4.5_0004376g0060 Nicotiana tabacum HOM05D003895 ORTHO05D286866 2.2e-07 62.0 49 63.3


User provided reference genes

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