Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PRCOL_00000848 Prasinoderma coloniale HOM05D020060 ORTHO05D021327 0.0e+00 3977.9 1960 100.0
Cre06.g250902 Chlamydomonas reinhardtii HOM05D020060 ORTHO05D021327 0.0e+00 2309.6 2501 51.3
MCO15G150 Micromonas commoda HOM05D020060 ORTHO05D021327 0.0e+00 1846.2 1292 70.8
AagrBONN_evm.TU.Sc2ySwM_228.5027 Anthoceros agrestis HOM05D020060 ORTHO05D021327 0.0e+00 1687.2 1272 65.6
CBR_g24144 Chara braunii HOM05D020060 ORTHO05D021327 0.0e+00 1620.5 1295 62.9
Pp3s169_110 Physcomitrium patens HOM05D020060 ORTHO05D021327 3.0e-75 288.9 381 42.3
Cpa.g.sc19.28 Carica papaya HOM05D001769 ORTHO05D001695 2.3e-11 76.6 337 25.2
SalBow8G1926 Salvia bowleyana HOM05D001769 ORTHO05D001695 6.7e-11 75.1 292 25.7
Haze_17479 Corylus avellana HOM05D001769 ORTHO05D001695 8.8e-11 74.7 290 23.8
CARHR146880 Cardamine hirsuta HOM05D001769 ORTHO05D001695 2.0e-10 73.6 292 25.7
Aqoxy3G03953 Aquilegia oxysepala HOM05D001769 ORTHO05D001695 2.5e-10 73.2 336 23.2
AL5G14550 Arabidopsis lyrata HOM05D001769 ORTHO05D001695 3.3e-10 72.8 292 25.0
AT3G25900 Arabidopsis thaliana HOM05D001769 ORTHO05D001695 4.3e-10 72.4 292 25.0
CANSAT01G0755 Cannabis sativa HOM05D001769 ORTHO05D001695 4.3e-10 72.4 331 23.3
SEGI_01962 Sequoiadendron giganteum HOM05D001769 ORTHO05D001695 4.3e-10 72.4 299 25.1
Gohir.D02G169700 Gossypium hirsutum HOM05D001769 ORTHO05D001695 7.4e-10 71.6 298 24.5
Gorai.005G190200 Gossypium raimondii HOM05D001769 ORTHO05D001695 7.4e-10 71.6 298 24.5
RcHm_v2.0_Chr4g0435231 Rosa chinensis HOM05D001769 ORTHO05D001695 9.7e-10 71.2 331 23.0
Atru.chr11.1252 Acer truncatum HOM05D001769 ORTHO05D001695 1.3e-09 70.9 337 24.0
Cc11_g10170 Coffea canephora HOM05D001769 ORTHO05D001695 1.3e-09 70.9 295 23.4
CDE09G1215 Ceratophyllum demersum HOM05D001769 ORTHO05D001695 1.7e-09 70.5 295 24.4
Thecc.02G231200 Theobroma cacao HOM05D001769 ORTHO05D001695 1.7e-09 70.5 300 26.0
Sed0027428 Sechium edule HOM05D001769 ORTHO05D001695 2.2e-09 70.1 334 23.1
Cfa018598 Carpinus fangiana HOM05D001769 ORTHO05D001695 2.8e-09 69.7 306 24.2
Dinv21088 Davidia involucrata HOM05D001769 ORTHO05D001695 2.8e-09 69.7 294 23.5
Sed0013266 Sechium edule HOM05D001769 ORTHO05D001695 2.8e-09 69.7 332 23.8
Sed0018164 Sechium edule HOM05D001769 ORTHO05D001695 2.8e-09 69.7 308 23.7
CSS0049904 Camellia sinensis var. sinensis HOM05D001769 ORTHO05D001695 3.7e-09 69.3 337 23.1
Carub.0005s2993 Capsella rubella HOM05D001769 ORTHO05D001695 3.7e-09 69.3 311 24.4
Ciclev10032092m.g Citrus clementina HOM05D001769 ORTHO05D001695 3.7e-09 69.3 308 25.0
COL.COLO4_10979 Corchorus olitorius HOM05D001769 ORTHO05D001695 3.7e-09 69.3 300 24.7
Migut.E00338 Erythranthe guttata HOM05D001769 ORTHO05D001695 3.7e-09 69.3 292 25.0
Oeu039278.1 Olea europaea HOM05D001769 ORTHO05D001695 3.7e-09 69.3 336 23.2
Sp2g15140 Schrenkiella parvula HOM05D001769 ORTHO05D001695 3.7e-09 69.3 283 24.7
C04p29960 Brassica napus HOM05D001769 ORTHO05D001695 4.8e-09 68.9 334 24.0
MSTRG.21544 Avicennia marina HOM05D001769 ORTHO05D001695 6.3e-09 68.6 337 25.5
CARHR291700 Cardamine hirsuta HOM05D001769 ORTHO05D001695 6.3e-09 68.6 351 25.1
Gohir.A03G146600 Gossypium hirsutum HOM05D001769 ORTHO05D001695 6.3e-09 68.6 298 23.8
Hma1.2p1_0061F.1_g033950 Hydrangea macrophylla HOM05D001769 ORTHO05D001695 8.2e-09 68.2 296 25.3
Oeu023619.1 Olea europaea HOM05D001769 ORTHO05D001695 8.2e-09 68.2 348 22.7
Rhsim12G0084400 Rhododendron simsii HOM05D001769 ORTHO05D001695 8.2e-09 68.2 332 22.6
Sed0020839 Sechium edule HOM05D001769 ORTHO05D001695 8.2e-09 68.2 332 23.5
BcaC06g33941 Brassica carinata HOM05D001769 ORTHO05D001695 1.1e-08 67.8 283 24.0
BcaB02g08074 Brassica carinata HOM05D001769 ORTHO05D001695 1.4e-08 67.4 333 23.7
BolC4t24529H Brassica oleracea HOM05D001769 ORTHO05D001695 1.4e-08 67.4 329 23.4
ClCG09G007300 Citrullus lanatus HOM05D001769 ORTHO05D001695 1.4e-08 67.4 334 22.8
A04p00140 Brassica napus HOM05D001769 ORTHO05D001695 1.8e-08 67.0 330 23.9
BraA04t15736Z Brassica rapa HOM05D001769 ORTHO05D001695 1.8e-08 67.0 330 23.9
THA.LOC104824031 Tarenaya hassleriana HOM05D001769 ORTHO05D001695 1.8e-08 67.0 285 24.9
TWI79G0565 Tripterygium wilfordii HOM05D001769 ORTHO05D001695 1.8e-08 67.0 301 25.6
vmacro01381 Vaccinium macrocarpon HOM05D001769 ORTHO05D001695 1.8e-08 67.0 332 22.9
MELO3C012247.2 Cucumis melo HOM05D001769 ORTHO05D001695 2.4e-08 66.6 337 22.3
Nn4g23827 Nelumbo nucifera HOM05D001769 ORTHO05D001695 2.4e-08 66.6 305 24.6
GSVIVG01011899001 Vitis vinifera HOM05D001769 ORTHO05D001695 2.4e-08 66.6 299 24.1
MSTRG.837 Avicennia marina HOM05D001769 ORTHO05D001695 3.1e-08 66.2 289 25.3
AT3G63250 Arabidopsis thaliana HOM05D001769 ORTHO05D001695 4.1e-08 65.9 311 24.8
A06p42390 Brassica napus HOM05D001769 ORTHO05D001695 4.1e-08 65.9 288 25.0
Manes.14G102300 Manihot esculenta HOM05D001769 ORTHO05D001695 4.1e-08 65.9 294 23.1
SGA_v2.0_scaffold14G06861 Striga asiatica HOM05D001769 ORTHO05D001695 4.1e-08 65.9 328 24.1
FvH4_4g27410 Fragaria vesca HOM05D001769 ORTHO05D001695 5.3e-08 65.5 339 23.6
FAN12G1028 Fragaria x ananassa HOM05D001769 ORTHO05D001695 5.3e-08 65.5 339 23.6
FAN15G0114 Fragaria x ananassa HOM05D001769 ORTHO05D001695 5.3e-08 65.5 333 22.2
Glyma.08G261200 Glycine max HOM05D001769 ORTHO05D001695 5.3e-08 65.5 295 23.4
Nn3g17832 Nelumbo nucifera HOM05D001769 ORTHO05D001695 5.3e-08 65.5 331 23.9
Nitab4.5_0003407g0030 Nicotiana tabacum HOM05D001769 ORTHO05D001695 5.3e-08 65.5 325 22.8
CsaV3_2G013530 Cucumis sativus L. HOM05D001769 ORTHO05D001695 6.9e-08 65.1 289 22.8
Duzib251G0409 Durio zibethinus HOM05D001769 ORTHO05D001695 6.9e-08 65.1 295 24.4
Eucgr.G02323 Eucalyptus grandis HOM05D001769 ORTHO05D001695 6.9e-08 65.1 336 24.7
FvH4_2g23130 Fragaria vesca HOM05D001769 ORTHO05D001695 6.9e-08 65.1 333 22.5
FAN24G0229 Fragaria x ananassa HOM05D001769 ORTHO05D001695 6.9e-08 65.1 333 22.5
Manes.06G068700 Manihot esculenta HOM05D001769 ORTHO05D001695 6.9e-08 65.1 294 23.1
SMO347G0239 Selaginella moellendorffii HOM05D001769 ORTHO05D001695 9.1e-08 64.7 293 23.9
BcaC06g31106 Brassica carinata HOM05D001769 ORTHO05D001695 1.2e-07 64.3 282 24.5
Lj3C1015T9 Lonicera japonica HOM05D001769 ORTHO05D001695 1.2e-07 64.3 331 23.6
Nitab4.5_0000145g0180 Nicotiana tabacum HOM05D001769 ORTHO05D001695 1.2e-07 64.3 341 22.0
Peaxi162Scf00004g02110 Petunia axillaris HOM05D001769 ORTHO05D001695 1.2e-07 64.3 291 23.4
Hund09519 Selenicereus undatus HOM05D001769 ORTHO05D001695 1.2e-07 64.3 332 22.6
Zm00001eb399940 Zea mays HOM05D001769 ORTHO05D001695 1.2e-07 64.3 293 24.6
CANSAT25G1683 Cannabis sativa HOM05D001769 ORTHO05D001695 1.5e-07 63.9 333 23.4
ClCG06G006370 Citrullus lanatus HOM05D001769 ORTHO05D001695 1.5e-07 63.9 296 22.6
CsaV3_7G027790 Cucumis sativus L. HOM05D001769 ORTHO05D001695 1.5e-07 63.9 334 21.9
MD03G1260400 Malus domestica HOM05D001769 ORTHO05D001695 1.5e-07 63.9 333 21.9
SalBow4G0978 Salvia bowleyana HOM05D001769 ORTHO05D001695 1.5e-07 63.9 344 24.1
Duzib211G0436 Durio zibethinus HOM05D001769 ORTHO05D001695 2.0e-07 63.5 348 20.7
Migut.D00332 Erythranthe guttata HOM05D001769 ORTHO05D001695 2.0e-07 63.5 338 22.8
MD11G1280700 Malus domestica HOM05D001769 ORTHO05D001695 2.0e-07 63.5 333 22.5
SalBow2G2364 Salvia bowleyana HOM05D001769 ORTHO05D001695 2.0e-07 63.5 334 22.8
Sc06g0007430 Simmondsia chinensis HOM05D001769 ORTHO05D001695 2.0e-07 63.5 287 22.3
GSVIVG01018019001 Vitis vinifera HOM05D001769 ORTHO05D001695 2.0e-07 63.5 336 23.5
AL5G46100 Arabidopsis lyrata HOM05D001769 ORTHO05D001695 2.6e-07 63.2 312 25.0
arahy.Tifrunner.gnm1.ann1.0W74TV Arachis hypogaea HOM05D001769 ORTHO05D001695 2.6e-07 63.2 294 22.1
Potri.010G125200 Populus trichocarpa HOM05D001769 ORTHO05D001695 2.6e-07 63.2 299 22.7
TAR374G1391 Trochodendron aralioides HOM05D001769 ORTHO05D001695 2.6e-07 63.2 336 23.2
unitig_8.g3258 Utricularia gibba HOM05D001769 ORTHO05D001695 2.6e-07 63.2 288 23.3
CSS0010339 Camellia sinensis var. sinensis HOM05D001769 ORTHO05D001695 3.4e-07 62.8 331 23.0
CiPaw.15G084800 Carya illinoinensis HOM05D001769 ORTHO05D001695 3.4e-07 62.8 300 23.0
Lj3C730T4 Lonicera japonica HOM05D001769 ORTHO05D001695 3.4e-07 62.8 335 21.5
THA.LOC104823038 Tarenaya hassleriana HOM05D001769 ORTHO05D001695 3.4e-07 62.8 338 23.1
AL3G37050 Arabidopsis lyrata HOM05D001769 ORTHO05D001695 4.5e-07 62.4 345 23.2
Lalb_Chr06g0160701 Lupinus albus HOM05D001769 ORTHO05D001695 4.5e-07 62.4 327 22.6
ECA247G3416 Erigeron canadensis HOM05D001769 ORTHO05D001695 5.9e-07 62.0 338 22.5
Thhalv10006074m.g Eutrema salsugineum HOM05D001769 ORTHO05D001695 5.9e-07 62.0 338 23.4
Prupe.1G310700 Prunus persica HOM05D001769 ORTHO05D001695 5.9e-07 62.0 292 24.3
Solyc09g065520.4 Solanum lycopersicum HOM05D001769 ORTHO05D001695 5.9e-07 62.0 341 22.6
Sopen09g027280 Solanum pennellii HOM05D001769 ORTHO05D001695 5.9e-07 62.0 341 22.6
TAR365G0541 Trochodendron aralioides HOM05D001769 ORTHO05D001695 5.9e-07 62.0 331 21.5
Rhsim01G0272800 Rhododendron simsii HOM05D001769 ORTHO05D001695 7.7e-07 61.6 341 21.4
Sed0003582 Sechium edule HOM05D001769 ORTHO05D001695 7.7e-07 61.6 333 21.6
CAN.G1402.5 Capsicum annuum HOM05D001769 ORTHO05D001695 1.0e-06 61.2 333 21.9
AUR62032310 Chenopodium quinoa HOM05D001769 ORTHO05D001695 1.0e-06 61.2 334 21.6
HanXRQChr16g0529241 Helianthus annuus HOM05D001769 ORTHO05D001695 1.0e-06 61.2 293 22.9
PGSC0003DMG400019316 Solanum tuberosum HOM05D001769 ORTHO05D001695 1.0e-06 61.2 341 22.9
ATR0665G350 Amborella trichopoda HOM05D001769 ORTHO05D001695 1.3e-06 60.8 333 21.3
Sp5g00280 Schrenkiella parvula HOM05D001769 ORTHO05D001695 1.3e-06 60.8 319 23.5
TAR633G0813 Trochodendron aralioides HOM05D001769 ORTHO05D001695 1.3e-06 60.8 334 21.6
GSVIVG01001192001 Vitis vinifera HOM05D001769 ORTHO05D001695 1.3e-06 60.8 330 23.0
AagrBONN_evm.TU.Sc2ySwM_228.4938 Anthoceros agrestis HOM05D001769 ORTHO05D001695 1.7e-06 60.5 335 21.8
Os10g0422200 Oryza sativa ssp. japonica HOM05D001769 ORTHO05D001695 1.7e-06 60.5 295 22.0
Ah.03g137660 Amaranthus hybridus HOM05D001769 ORTHO05D001695 2.2e-06 60.1 306 23.2
ATR0171G038 Amborella trichopoda HOM05D001769 ORTHO05D001695 2.2e-06 60.1 295 22.0
AT3G22740 Arabidopsis thaliana HOM05D001769 ORTHO05D001695 2.2e-06 60.1 352 23.0
CARHR098590 Cardamine hirsuta HOM05D001769 ORTHO05D001695 2.2e-06 60.1 301 22.3
BcaB06g26382 Brassica carinata HOM05D001769 ORTHO05D001695 2.9e-06 59.7 352 23.6
Carub.0003s2287 Capsella rubella HOM05D001769 ORTHO05D001695 2.9e-06 59.7 302 23.8
Cc03_g04100 Coffea canephora HOM05D001769 ORTHO05D001695 2.9e-06 59.7 341 21.1
MD00G1181400 Malus domestica HOM05D001769 ORTHO05D001695 2.9e-06 59.7 295 23.7
TWI75G1394 Tripterygium wilfordii HOM05D001769 ORTHO05D001695 2.9e-06 59.7 331 22.4
arahy.Tifrunner.gnm1.ann1.2XQ2YI Arachis hypogaea HOM05D001769 ORTHO05D001695 3.8e-06 59.3 292 20.9
arahy.Tifrunner.gnm1.ann1.8L0DUY Arachis hypogaea HOM05D001769 ORTHO05D001695 5.0e-06 58.9 292 20.5
BcaC05g28026 Brassica carinata HOM05D001769 ORTHO05D001695 5.0e-06 58.9 338 22.8
C05p40390 Brassica napus HOM05D001769 ORTHO05D001695 5.0e-06 58.9 338 22.8
BolC5t32780H Brassica oleracea HOM05D001769 ORTHO05D001695 5.0e-06 58.9 338 22.8
HanXRQChr08g0213361 Helianthus annuus HOM05D001769 ORTHO05D001695 5.0e-06 58.9 333 21.6
Nn1g02391 Nelumbo nucifera HOM05D001769 ORTHO05D001695 5.0e-06 58.9 334 23.4
Nitab4.5_0009452g0020 Nicotiana tabacum HOM05D001769 ORTHO05D001695 5.0e-06 58.9 344 22.7
Cfa006178 Carpinus fangiana HOM05D001769 ORTHO05D001695 6.5e-06 58.5 336 22.3
Ca_10863_v3 Cicer arietinum L. HOM05D001769 ORTHO05D001695 6.5e-06 58.5 337 22.6
DCAR_030677 Daucus carota HOM05D001769 ORTHO05D000003 6.5e-06 58.5 357 22.1
MD16G1043200 Malus domestica HOM05D001769 ORTHO05D001695 6.5e-06 58.5 292 21.6
Manes.01G205100 Manihot esculenta HOM05D001769 ORTHO05D001695 6.5e-06 58.5 338 21.9
RcHm_v2.0_Chr6g0290381 Rosa chinensis HOM05D001769 ORTHO05D001695 6.5e-06 58.5 337 21.4
Manes.05G078500 Manihot esculenta HOM05D001769 ORTHO05D001695 8.5e-06 58.2 343 22.2


User provided reference genes

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