Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PRCOL_00000716 Prasinoderma coloniale HOM05D002468 ORTHO05D009172 2.7e-126 455.3 224 100.0
Carub.0006s1157 Capsella rubella HOM05D002468 ORTHO05D009172 3.5e-49 199.1 168 60.1
Thhalv10014743m.g Eutrema salsugineum HOM05D002468 ORTHO05D009172 6.0e-49 198.4 168 59.5
AT5G13410 Arabidopsis thaliana HOM05D002468 ORTHO05D009172 7.8e-49 198.0 168 60.1
BcaNung01882 Brassica carinata HOM05D002468 ORTHO05D009172 7.8e-49 198.0 168 58.3
AL6G24030 Arabidopsis lyrata HOM05D002468 ORTHO05D009172 1.3e-48 197.2 168 59.5
TPR.G9727 Trifolium pratense HOM05D002468 ORTHO05D009172 1.7e-48 196.8 168 60.1
Lj1g0015804 Lotus japonicus HOM05D002468 ORTHO05D009172 2.3e-48 196.4 168 60.7
BcaNung01157 Brassica carinata HOM05D002468 ORTHO05D009172 3.0e-48 196.1 168 58.3
DCAR_026442 Daucus carota HOM05D002468 ORTHO05D009172 3.0e-48 196.1 168 61.3
Medtr7g006570 Medicago truncatula HOM05D002468 ORTHO05D009172 3.0e-48 196.1 168 58.9
A02p01900 Brassica napus HOM05D002468 ORTHO05D009172 3.9e-48 195.7 168 58.3
BraA02t05163Z Brassica rapa HOM05D002468 ORTHO05D009172 3.9e-48 195.7 168 58.3
CARHR200020 Cardamine hirsuta HOM05D002468 ORTHO05D009172 5.1e-48 195.3 168 58.9
Manes.08G100500 Manihot esculenta HOM05D002468 ORTHO05D009172 5.1e-48 195.3 168 59.5
Zm00001eb040970 Zea mays HOM05D002468 ORTHO05D009172 6.6e-48 194.9 168 58.3
Haze_12509 Corylus avellana HOM05D002468 ORTHO05D005371 8.7e-48 194.5 168 60.7
THA.LOC104825606 Tarenaya hassleriana HOM05D002468 ORTHO05D009172 8.7e-48 194.5 168 58.9
TAR622G1298 Trochodendron aralioides HOM05D002468 ORTHO05D009172 8.7e-48 194.5 169 60.4
GSVIVG01001099001 Vitis vinifera HOM05D002468 ORTHO05D009172 8.7e-48 194.5 168 60.7
ATR0582G095 Amborella trichopoda HOM05D002468 ORTHO05D009172 1.1e-47 194.1 168 60.1
Cfa009456 Carpinus fangiana HOM05D002468 ORTHO05D009172 1.5e-47 193.7 168 60.7
Ciclev10005642m.g Citrus clementina HOM05D002468 ORTHO05D009172 1.5e-47 193.7 168 59.5
Lalb_Chr04g0257311 Lupinus albus HOM05D002468 ORTHO05D009172 1.5e-47 193.7 168 58.9
CANSAT80G1997 Cannabis sativa HOM05D002468 ORTHO05D009172 1.9e-47 193.4 168 59.5
Sed0016874 Sechium edule HOM05D002468 ORTHO05D009172 1.9e-47 193.4 168 58.9
vmacro01016 Vaccinium macrocarpon HOM05D002468 ORTHO05D009172 1.9e-47 193.4 168 60.1
Actinidia30582 Actinidia chinensis HOM05D002468 ORTHO05D009172 2.5e-47 193.0 168 59.5
PSO017G2800 Papaver somniferum HOM05D002468 ORTHO05D009172 2.5e-47 193.0 168 58.3
AagrBONN_evm.TU.Sc2ySwM_344.1577 Anthoceros agrestis HOM05D002468 ORTHO05D009172 7.3e-47 191.4 168 57.7
CDE06G1087 Ceratophyllum demersum HOM05D002468 ORTHO05D009172 7.3e-47 191.4 168 58.3
Cc11_g14950 Coffea canephora HOM05D002468 ORTHO05D009172 7.3e-47 191.4 168 58.9
Eucgr.G01979 Eucalyptus grandis HOM05D002468 ORTHO05D009172 7.3e-47 191.4 168 58.9
Glyma.18G292600 Glycine max HOM05D002468 ORTHO05D009172 7.3e-47 191.4 168 59.5
Potri.001G068300 Populus trichocarpa HOM05D002468 ORTHO05D009172 7.3e-47 191.4 173 59.0
Rhsim12G0017000 Rhododendron simsii HOM05D002468 ORTHO05D009172 7.3e-47 191.4 168 57.7
Sabra01G0047500 Salix brachista HOM05D002468 ORTHO05D009172 7.3e-47 191.4 168 60.1
Phvul.008G009400 Phaseolus vulgaris HOM05D002468 ORTHO05D009172 9.6e-47 191.0 168 58.9
MSTRG.8059 Avicennia marina HOM05D002468 ORTHO05D009172 1.3e-46 190.7 168 58.9
Os07g0133700 Oryza sativa ssp. japonica HOM05D002468 ORTHO05D009172 1.3e-46 190.7 168 57.1
Sp6g30610 Schrenkiella parvula HOM05D002468 ORTHO05D009172 1.3e-46 190.7 168 57.1
SEGI_23050 Sequoiadendron giganteum HOM05D002468 ORTHO05D009172 1.3e-46 190.7 168 58.9
Gohir.D04G141000 Gossypium hirsutum HOM05D002468 ORTHO05D009172 1.6e-46 190.3 168 58.9
Gorai.012G126000 Gossypium raimondii HOM05D002468 ORTHO05D009172 1.6e-46 190.3 168 58.9
Nitab4.5_0002569g0030 Nicotiana tabacum HOM05D002468 ORTHO05D009172 1.6e-46 190.3 168 57.7
Nitab4.5_0004349g0030 Nicotiana tabacum HOM05D002468 ORTHO05D009172 1.6e-46 190.3 168 57.7
Atru.chr12.1429 Acer truncatum HOM05D002468 ORTHO05D009172 2.1e-46 189.9 168 59.5
Lj6A840G36 Lonicera japonica HOM05D002468 ORTHO05D009172 2.1e-46 189.9 170 58.2
Solyc11g033284.1 Solanum lycopersicum HOM05D002468 ORTHO05D009172 2.1e-46 189.9 168 58.3
HPP92_024421 Vanilla planifolia HOM05D002468 ORTHO05D009172 2.1e-46 189.9 168 58.3
Actinidia22113 Actinidia chinensis HOM05D002468 ORTHO05D005371 2.8e-46 189.5 168 57.7
Peaxi162Scf00842g00418 Petunia axillaris HOM05D002468 ORTHO05D009172 2.8e-46 189.5 168 57.1
Sc11g0000070 Simmondsia chinensis HOM05D002468 ORTHO05D009172 3.6e-46 189.1 168 57.7
FvH4_4g22550 Fragaria vesca HOM05D002468 ORTHO05D009172 4.8e-46 188.7 168 57.7
Sopen11g017130 Solanum pennellii HOM05D002468 ORTHO05D009172 4.8e-46 188.7 168 58.3
Hma1.2p1_1436F.1_g283230 Hydrangea macrophylla HOM05D002468 ORTHO05D009172 6.2e-46 188.3 168 57.7
PGR119G1456 Punica granatum HOM05D002468 ORTHO05D009172 6.2e-46 188.3 168 58.9
MELO3C017816.2 Cucumis melo HOM05D002468 ORTHO05D009172 8.1e-46 188.0 168 58.3
Migut.K01048 Erythranthe guttata HOM05D002468 ORTHO05D009172 8.1e-46 188.0 168 57.7
FAN07G2873 Fragaria x ananassa HOM05D002468 ORTHO05D009172 8.1e-46 188.0 168 57.7
FAN17G0051 Fragaria x ananassa HOM05D002468 ORTHO05D005371 8.1e-46 188.0 168 57.7
MD16G1141800 Malus domestica HOM05D002468 ORTHO05D009172 8.1e-46 188.0 168 57.7
Mapoly0061s0100 Marchantia polymorpha HOM05D002468 ORTHO05D009172 1.4e-45 187.2 172 54.7
PGSC0003DMG401028027 Solanum tuberosum HOM05D002468 ORTHO05D009172 1.4e-45 187.2 168 57.7
Aqoxy5G03073 Aquilegia oxysepala HOM05D002468 ORTHO05D009172 1.8e-45 186.8 168 56.5
ClCG07G011930 Citrullus lanatus HOM05D002468 ORTHO05D009172 1.8e-45 186.8 169 58.0
ECA246G0169 Erigeron canadensis HOM05D002468 ORTHO05D005371 1.8e-45 186.8 169 58.0
Thecc.02G191300 Theobroma cacao HOM05D002468 ORTHO05D009172 1.8e-45 186.8 168 59.5
VMungo1383G2635 Vigna mungo HOM05D002468 ORTHO05D009172 2.4e-45 186.4 170 57.1
EL10Ac7g17009 Beta vulgaris HOM05D002468 ORTHO05D009172 3.1e-45 186.0 168 56.0
CsaV3_4G002230 Cucumis sativus L. HOM05D002468 ORTHO05D009172 3.1e-45 186.0 168 57.1
Pp3c16_12110 Physcomitrium patens HOM05D002468 ORTHO05D009172 3.1e-45 186.0 168 56.0
RcHm_v2.0_Chr4g0428781 Rosa chinensis HOM05D002468 ORTHO05D009172 3.1e-45 186.0 168 56.5
CAN.G624.2 Capsicum annuum HOM05D002468 ORTHO05D009172 4.0e-45 185.7 169 56.2
Aa31LG3G14280 Aethionema arabicum HOM05D002468 ORTHO05D009172 5.3e-45 185.3 175 54.9
C02p06120 Brassica napus HOM05D002468 ORTHO05D009172 1.2e-44 184.1 170 55.9
BolC2t06553H Brassica oleracea HOM05D002468 ORTHO05D009172 1.2e-44 184.1 170 55.9
AUR62041001 Chenopodium quinoa HOM05D002468 ORTHO05D009172 1.5e-44 183.7 183 54.6
Lsat_1_v5_gn_3_32621 Lactuca sativa HOM05D002468 ORTHO05D009172 2.0e-44 183.3 163 59.5
TWI36G1656 Tripterygium wilfordii HOM05D002468 ORTHO05D009172 2.0e-44 183.3 168 57.1
Pp3c5_13790 Physcomitrium patens HOM05D002468 ORTHO05D009172 2.6e-44 183.0 169 57.4
Aqoxy5G03072 Aquilegia oxysepala HOM05D002468 ORTHO05D009172 4.4e-44 182.2 168 56.5
Oeu010258.1 Olea europaea HOM05D002468 ORTHO05D009172 7.6e-44 181.4 181 53.6
TWI75G1838 Tripterygium wilfordii HOM05D002468 ORTHO05D009172 2.2e-43 179.9 168 57.1
SMO137G0309 Selaginella moellendorffii HOM05D002468 ORTHO05D009172 2.9e-43 179.5 168 55.4
CBR_g38077 Chara braunii HOM05D002468 ORTHO05D009172 1.9e-42 176.8 170 52.4
Cpa.g.sc38.65 Carica papaya HOM05D002468 ORTHO05D009172 2.4e-42 176.4 154 60.4
Cre12.g534700 Chlamydomonas reinhardtii HOM05D002468 ORTHO05D009172 1.6e-41 173.7 175 53.7
SGA_v2.0_scaffold258G45770 Striga asiatica HOM05D002468 ORTHO05D009172 8.1e-38 161.4 173 51.4
MCO06G148 Micromonas commoda HOM05D002468 ORTHO05D009172 9.9e-36 154.5 183 47.5
PRCOL_00003949 Prasinoderma coloniale HOM05D002468 ORTHO05D009172 8.7e-32 141.4 172 44.2
THA.LOC104816706 Tarenaya hassleriana HOM05D002468 ORTHO05D009172 8.7e-32 141.4 124 59.7
Nn4g22124 Nelumbo nucifera HOM05D002468 ORTHO05D009172 6.2e-30 135.2 107 60.7
Dinv17538 Davidia involucrata HOM05D002468 ORTHO05D009172 1.4e-29 134.0 111 58.6
Ca_07032_v3 Cicer arietinum L. HOM05D002468 ORTHO05D009172 5.3e-29 132.1 107 58.9
CSS0032033 Camellia sinensis var. sinensis HOM05D002468 ORTHO05D005371 6.9e-29 131.7 108 58.3
QL03p049029 Quercus lobata HOM05D002468 ORTHO05D009172 6.9e-29 131.7 115 58.3
Prupe.1G214100 Prunus persica HOM05D002468 ORTHO05D009172 9.0e-29 131.3 107 59.8
arahy.Tifrunner.gnm1.ann1.PEQR69 Arachis hypogaea HOM05D002468 ORTHO05D009172 7.6e-28 128.3 218 39.9
arahy.Tifrunner.gnm1.ann1.QPD63Z Arachis hypogaea HOM05D002468 ORTHO05D009172 7.6e-28 128.3 218 39.9
CiPaw.05G100600 Carya illinoinensis HOM05D002468 ORTHO05D009172 1.3e-27 127.5 109 56.0
Gohir.A04G101800 Gossypium hirsutum HOM05D002468 ORTHO05D009172 6.5e-27 125.2 168 45.8
Psat3g206960 Pisum sativum HOM05D002468 ORTHO05D009172 5.5e-26 122.1 91 60.4
MBI11_g34559_MAGBIO Magnolia biondii HOM05D002468 ORTHO05D009172 9.3e-26 121.3 94 58.5
Ah.06g186920 Amaranthus hybridus HOM05D002468 ORTHO05D009172 2.1e-25 120.2 89 59.6
Glyma.02G090600 Glycine max HOM05D002468 ORTHO05D009172 5.7e-23 112.1 85 58.8
MCO11G048 Micromonas commoda HOM05D002468 ORTHO05D009172 2.2e-19 100.1 151 44.4
MD13G1131500 Malus domestica HOM05D002468 ORTHO05D009172 1.9e-18 97.1 170 39.4
Cre02.g095122 Chlamydomonas reinhardtii HOM05D002468 ORTHO05D009172 1.9e-15 87.0 178 38.2
Ah.06g186900 Amaranthus hybridus HOM05D002468 ORTHO05D009172 5.9e-12 75.5 81 58.0
Oeu050064.1 Olea europaea HOM05D007400 ORTHO05D009351 6.1e-09 65.5 170 31.8
Migut.L00012 Erythranthe guttata HOM05D007400 ORTHO05D009351 1.4e-08 64.3 186 29.6
Lalb_Chr09g0328751 Lupinus albus HOM05D007400 ORTHO05D009351 1.4e-08 64.3 165 32.7
ClCG01G009370 Citrullus lanatus HOM05D007400 ORTHO05D009351 1.8e-08 63.9 164 32.3
Potri.012G119800 Populus trichocarpa HOM05D007400 ORTHO05D009351 1.8e-08 63.9 170 33.5
arahy.Tifrunner.gnm1.ann1.L1RKW0 Arachis hypogaea HOM05D007400 ORTHO05D009351 6.7e-08 62.0 165 33.3
THA.LOC104811504 Tarenaya hassleriana HOM05D007400 ORTHO05D009351 8.8e-08 61.6 171 31.6
arahy.Tifrunner.gnm1.ann1.ARB9WH Arachis hypogaea HOM05D007400 ORTHO05D009351 1.1e-07 61.2 165 33.3
Hma1.2p1_1436F.1_g283220 Hydrangea macrophylla HOM05D002468 ORTHO05D009172 1.1e-07 61.2 49 53.1
CsaV3_1G046550 Cucumis sativus L. HOM05D007400 ORTHO05D009351 1.5e-07 60.8 164 31.7
CANSAT11G1633 Cannabis sativa HOM05D007400 ORTHO05D009351 2.6e-07 60.1 170 30.0
Cc09_g06320 Coffea canephora HOM05D007400 ORTHO05D009351 4.4e-07 59.3 164 31.7
Cre02.g095450 Chlamydomonas reinhardtii HOM05D007127 ORTHO05D008803 5.7e-07 58.9 179 33.0
Carub.0007s2138 Capsella rubella HOM05D007400 ORTHO05D009351 7.4e-07 58.5 180 28.9
Cre07.g315700 Chlamydomonas reinhardtii HOM05D007127 ORTHO05D008803 7.4e-07 58.5 176 32.4
Thhalv10026156m.g Eutrema salsugineum HOM05D007400 ORTHO05D009351 7.4e-07 58.5 174 29.3
CiPaw.10G065400 Carya illinoinensis HOM05D007400 ORTHO05D009351 1.3e-06 57.8 169 30.2
CDE05G1756 Ceratophyllum demersum HOM05D007400 ORTHO05D009351 1.3e-06 57.8 171 31.0
Glyma.10G066600 Glycine max HOM05D007400 ORTHO05D009351 1.7e-06 57.4 165 30.9
Lj5g0000759 Lotus japonicus HOM05D007400 ORTHO05D009351 1.7e-06 57.4 165 30.9
QL02p011811 Quercus lobata HOM05D002468 ORTHO05D009172 1.7e-06 57.4 49 53.1
Sed0027636 Sechium edule HOM05D007400 ORTHO05D009351 1.7e-06 57.4 185 28.6
Nn7g38084 Nelumbo nucifera HOM05D007400 ORTHO05D009351 2.2e-06 57.0 175 30.3
GSVIVG01012101001 Vitis vinifera HOM05D007400 ORTHO05D009351 2.2e-06 57.0 173 30.6
Aa31LG6G2310 Aethionema arabicum HOM05D007400 ORTHO05D009351 2.8e-06 56.6 173 27.7
Hma1.2p1_0040F.1_g025040 Hydrangea macrophylla HOM05D007400 ORTHO05D009351 2.8e-06 56.6 161 31.7
Sp7g18330 Schrenkiella parvula HOM05D007400 ORTHO05D009351 4.8e-06 55.8 172 29.1
Cfa000725 Carpinus fangiana HOM05D007400 ORTHO05D009351 8.2e-06 55.1 170 27.6
Lj2A352T41 Lonicera japonica HOM05D007400 ORTHO05D009351 8.2e-06 55.1 165 27.9


User provided reference genes

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