Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PRCOL_00000691 Prasinoderma coloniale HOM05D004084 ORTHO05D004662 0.0e+00 1445.3 822 100.0
Glyma.20G037400 Glycine max HOM05D004084 ORTHO05D004662 6.2e-27 127.1 184 40.2
Thhalv10014461m.g Eutrema salsugineum HOM05D004084 ORTHO05D004662 1.8e-26 125.6 166 41.0
Nitab4.5_0001500g0060 Nicotiana tabacum HOM05D001938 ORTHO05D004662 1.5e-25 122.5 159 42.8
Thhalv10014482m.g Eutrema salsugineum HOM05D004084 ORTHO05D004662 2.0e-25 122.1 188 39.9
VMungo0540G1882 Vigna mungo HOM05D004084 ORTHO05D004662 2.6e-25 121.7 159 43.4
Nitab4.5_0000730g0060 Nicotiana tabacum HOM05D001938 ORTHO05D004662 3.4e-25 121.3 159 43.4
MBI13_g27798_MAGBIO Magnolia biondii HOM05D004084 ORTHO05D004662 4.5e-25 120.9 163 38.0
SGA_v2.0_scaffold29G12252 Striga asiatica HOM05D004084 ORTHO05D004662 5.8e-25 120.6 160 42.5
unitig_8.g3650 Utricularia gibba HOM05D004084 ORTHO05D000654 5.8e-25 120.6 163 39.9
Solyc11g064830.2 Solanum lycopersicum HOM05D004084 ORTHO05D004662 7.6e-25 120.2 159 41.5
Ciclev10016417m.g Citrus clementina HOM05D004084 ORTHO05D004662 1.0e-24 119.8 159 41.5
Sopen11g024490 Solanum pennellii HOM05D004084 ORTHO05D004662 1.0e-24 119.8 159 41.5
PGSC0003DMG400009461 Solanum tuberosum HOM05D004084 ORTHO05D004662 1.0e-24 119.8 159 41.5
Glyma.07G230600 Glycine max HOM05D004084 ORTHO05D004662 1.3e-24 119.4 184 40.8
BraA03t10266Z Brassica rapa HOM05D004084 ORTHO05D004662 1.7e-24 119.0 169 39.6
SEGI_32483 Sequoiadendron giganteum HOM05D004084 ORTHO05D004662 1.7e-24 119.0 170 38.8
BolC9t59292H Brassica oleracea HOM05D004084 ORTHO05D004662 2.2e-24 118.6 166 42.8
Nitab4.5_0000718g0220 Nicotiana tabacum HOM05D004084 ORTHO05D004662 2.2e-24 118.6 199 38.7
Sp6g31330 Schrenkiella parvula HOM05D004084 ORTHO05D004662 2.2e-24 118.6 188 38.8
BcaB01g05145 Brassica carinata HOM05D004084 ORTHO05D004662 2.9e-24 118.2 166 38.6
A03p09480 Brassica napus HOM05D004084 ORTHO05D004662 2.9e-24 118.2 166 38.6
C03p11060 Brassica napus HOM05D004084 ORTHO05D004662 2.9e-24 118.2 166 38.6
BolC3t13575H Brassica oleracea HOM05D004084 ORTHO05D004662 2.9e-24 118.2 166 38.6
Dinv05100 Davidia involucrata HOM05D004084 ORTHO05D004662 3.8e-24 117.9 159 42.1
MSTRG.17633 Avicennia marina HOM05D004084 ORTHO05D004662 4.9e-24 117.5 163 41.1
Carub.0006s1082 Capsella rubella HOM05D004084 ORTHO05D004662 4.9e-24 117.5 183 40.4
Carub.0006s1777 Capsella rubella HOM05D004084 ORTHO05D004662 4.9e-24 117.5 164 39.0
TWI79G0099 Tripterygium wilfordii HOM05D004084 ORTHO05D004662 4.9e-24 117.5 164 41.5
AT5G19430 Arabidopsis thaliana HOM05D004084 ORTHO05D004662 6.5e-24 117.1 194 38.7
Cre13.g604750 Chlamydomonas reinhardtii HOM05D004084 ORTHO05D004662 6.5e-24 117.1 174 38.5
Phvul.006G030700 Phaseolus vulgaris HOM05D004084 ORTHO05D004662 6.5e-24 117.1 189 36.5
Atru.chr3.2757 Acer truncatum HOM05D004084 ORTHO05D004662 8.4e-24 116.7 159 39.6
arahy.Tifrunner.gnm1.ann1.X3DJVQ Arachis hypogaea HOM05D004084 ORTHO05D004662 8.4e-24 116.7 186 38.7
A03p05580 Brassica napus HOM05D004084 ORTHO05D004662 8.4e-24 116.7 164 43.3
BraA03t09895Z Brassica rapa HOM05D004084 ORTHO05D004662 8.4e-24 116.7 164 43.3
CARHR200800 Cardamine hirsuta HOM05D004084 ORTHO05D004662 8.4e-24 116.7 183 36.1
CiPaw.14G113600 Carya illinoinensis HOM05D004084 ORTHO05D004662 8.4e-24 116.7 165 38.2
Lj6g0014777 Lotus japonicus HOM05D004084 ORTHO05D004662 8.4e-24 116.7 160 45.0
Psat5g181240 Pisum sativum HOM05D004084 ORTHO05D004662 1.1e-23 116.3 188 38.3
MSTRG.17516 Avicennia marina HOM05D004084 ORTHO05D004662 1.4e-23 115.9 163 41.1
BcaNung06777 Brassica carinata HOM05D004084 ORTHO05D004662 1.4e-23 115.9 168 39.9
Os01g0954400 Oryza sativa ssp. japonica HOM05D004084 ORTHO05D004662 1.4e-23 115.9 165 40.0
Peaxi162Scf00004g04520 Petunia axillaris HOM05D004084 ORTHO05D004662 1.4e-23 115.9 159 45.3
Sp6g24980 Schrenkiella parvula HOM05D004084 ORTHO05D004662 1.4e-23 115.9 196 37.8
Aa31LG3G14920 Aethionema arabicum HOM05D004084 ORTHO05D004662 1.9e-23 115.5 168 40.5
Eucgr.B03731 Eucalyptus grandis HOM05D004084 ORTHO05D004662 1.9e-23 115.5 188 37.2
Nitab4.5_0012538g0010 Nicotiana tabacum HOM05D004084 ORTHO05D004662 1.9e-23 115.5 214 36.0
SGA_v2.0_scaffold310G48197 Striga asiatica HOM05D004084 ORTHO05D004662 1.9e-23 115.5 160 38.8
ClCG02G022880 Citrullus lanatus HOM05D004084 ORTHO05D004662 2.5e-23 115.2 160 38.8
HanXRQChr14g0432231 Helianthus annuus HOM05D004084 ORTHO05D004662 2.5e-23 115.2 194 37.1
Lalb_Chr10g0106291 Lupinus albus HOM05D004084 ORTHO05D004662 2.5e-23 115.2 171 42.7
Sed0020433 Sechium edule HOM05D004084 ORTHO05D004662 2.5e-23 115.2 166 38.0
Atru.chr4.1902 Acer truncatum HOM05D004084 ORTHO05D004662 3.2e-23 114.8 159 39.0
Ca_03985_v3 Cicer arietinum L. HOM05D004084 ORTHO05D004662 3.2e-23 114.8 173 41.6
Hma1.2p1_0129F.1_g060160 Hydrangea macrophylla HOM05D004084 ORTHO05D004662 3.2e-23 114.8 167 40.7
Potri.001G275900 Populus trichocarpa HOM05D004084 ORTHO05D004662 3.2e-23 114.8 159 42.1
PGR119G1682 Punica granatum HOM05D004084 ORTHO05D004662 3.2e-23 114.8 169 39.1
PGR123G0005 Punica granatum HOM05D004084 ORTHO05D004662 3.2e-23 114.8 169 39.1
C03p06530 Brassica napus HOM05D004084 ORTHO05D004662 4.2e-23 114.4 172 37.8
BolC3t13153H Brassica oleracea HOM05D004084 ORTHO05D004662 4.2e-23 114.4 172 37.8
BraA10t44615Z Brassica rapa HOM05D004084 ORTHO05D004662 4.2e-23 114.4 166 42.2
ECA238G4029 Erigeron canadensis HOM05D004084 ORTHO05D004662 4.2e-23 114.4 177 37.9
MSTRG.21348 Avicennia marina HOM05D004084 ORTHO05D004662 5.5e-23 114.0 162 42.0
Dinv36171 Davidia involucrata HOM05D004084 ORTHO05D004662 5.5e-23 114.0 159 40.9
AT5G12310 Arabidopsis thaliana HOM05D004084 ORTHO05D004662 7.1e-23 113.6 183 39.9
FAN21G2250 Fragaria x ananassa HOM05D004084 ORTHO05D004662 7.1e-23 113.6 159 40.9
PGR102G0788 Punica granatum HOM05D004084 ORTHO05D004662 7.1e-23 113.6 233 33.9
PGSC0003DMG400022698 Solanum tuberosum HOM05D004084 ORTHO05D004662 7.1e-23 113.6 196 36.7
THA.LOC104824623 Tarenaya hassleriana HOM05D004084 ORTHO05D004662 7.1e-23 113.6 190 37.9
TAR623G1229 Trochodendron aralioides HOM05D004084 ORTHO05D004662 7.1e-23 113.6 166 39.8
A10p25510 Brassica napus HOM05D004084 ORTHO05D004662 9.3e-23 113.2 168 39.3
Cfa009849 Carpinus fangiana HOM05D004084 ORTHO05D004662 9.3e-23 113.2 171 39.2
Manes.02G139800 Manihot esculenta HOM05D004084 ORTHO05D004662 9.3e-23 113.2 159 39.0
RcHm_v2.0_Chr5g0050631 Rosa chinensis HOM05D004084 ORTHO05D004662 9.3e-23 113.2 159 40.3
Thecc.09G249200 Theobroma cacao HOM05D004084 ORTHO05D004662 9.3e-23 113.2 181 38.1
TWI75G0849 Tripterygium wilfordii HOM05D004084 ORTHO05D004662 9.3e-23 113.2 160 39.4
FvH4_3g27900 Fragaria vesca HOM05D004084 ORTHO05D004662 1.2e-22 112.8 159 40.3
FAN16G3201 Fragaria x ananassa HOM05D004084 ORTHO05D004662 1.2e-22 112.8 159 40.3
FAN25G0474 Fragaria x ananassa HOM05D004084 ORTHO05D004662 1.2e-22 112.8 159 40.3
Potri.009G070600 Populus trichocarpa HOM05D004084 ORTHO05D004662 1.2e-22 112.8 176 42.6
Duzib168G1105 Durio zibethinus HOM05D004084 ORTHO05D004662 2.1e-22 112.1 186 40.3
Lsat_1_v5_gn_2_32240 Lactuca sativa HOM05D004084 ORTHO05D004662 2.1e-22 112.1 172 37.8
Rhsim13G0210600 Rhododendron simsii HOM05D004084 ORTHO05D004662 2.1e-22 112.1 163 39.3
GSVIVG01037269001 Vitis vinifera HOM05D004084 ORTHO05D004662 2.1e-22 112.1 191 36.1
C09p64590 Brassica napus HOM05D004084 ORTHO05D004662 2.7e-22 111.7 166 41.0
Migut.N02373 Erythranthe guttata HOM05D004084 ORTHO05D004662 4.6e-22 110.9 159 40.9
Sc06g0004680 Simmondsia chinensis HOM05D004084 ORTHO05D004662 4.6e-22 110.9 166 38.6
Duzib150G1594 Durio zibethinus HOM05D004084 ORTHO05D004662 6.0e-22 110.5 199 38.2
CANSAT54G0855 Cannabis sativa HOM05D004084 ORTHO05D004662 7.9e-22 110.2 171 42.1
Solyc01g008810.3 Solanum lycopersicum HOM05D004084 ORTHO05D004662 1.0e-21 109.8 158 39.2
Sopen01g004320 Solanum pennellii HOM05D004084 ORTHO05D004662 1.0e-21 109.8 158 39.2
ATR0680G173 Amborella trichopoda HOM05D004084 ORTHO05D004662 1.3e-21 109.4 192 37.5
Gohir.A09G110200 Gossypium hirsutum HOM05D004084 ORTHO05D004662 1.3e-21 109.4 168 40.5
Lj1A284G15 Lonicera japonica HOM05D004084 ORTHO05D004662 1.3e-21 109.4 198 36.4
Gorai.013G253900 Gossypium raimondii HOM05D004084 ORTHO05D004662 1.8e-21 109.0 170 40.6
Ah.04g161980 Amaranthus hybridus HOM05D004084 ORTHO05D004662 2.3e-21 108.6 164 37.8
Gohir.A13G219100 Gossypium hirsutum HOM05D004084 ORTHO05D004662 2.3e-21 108.6 170 40.6
PSO339G4433 Papaver somniferum HOM05D004084 ORTHO05D004662 2.3e-21 108.6 161 35.4
Hund07438 Selenicereus undatus HOM05D004084 ORTHO05D004662 3.9e-21 107.8 170 38.2
Gohir.D09G106500 Gossypium hirsutum HOM05D004084 ORTHO05D004662 6.7e-21 107.1 168 39.9
Oeu016695.1 Olea europaea HOM05D004084 ORTHO05D004662 6.7e-21 107.1 159 39.0
Gorai.006G124000 Gossypium raimondii HOM05D004084 ORTHO05D004662 8.7e-21 106.7 168 39.3
MD11G1185700 Malus domestica HOM05D004084 ORTHO05D004662 8.7e-21 106.7 162 42.6
HanXRQChr06g0182501 Helianthus annuus HOM05D004084 ORTHO05D004662 1.1e-20 106.3 178 34.8
Gohir.D13G222800 Gossypium hirsutum HOM05D004084 ORTHO05D004662 1.5e-20 105.9 170 40.0
EL10Ac4g10147 Beta vulgaris HOM05D004084 ORTHO05D004662 1.9e-20 105.5 169 36.1
HPP92_006725 Vanilla planifolia HOM05D004084 ORTHO05D004662 1.9e-20 105.5 163 41.7
Zm00001eb140640 Zea mays HOM05D004084 ORTHO05D004662 2.5e-20 105.1 163 40.5
Cc08_g06320 Coffea canephora HOM05D004084 ORTHO05D004662 3.3e-20 104.8 197 34.5
Prupe.4G267100 Prunus persica HOM05D004084 ORTHO05D004662 4.3e-20 104.4 161 43.5
MELO3C014562.2 Cucumis melo HOM05D004084 ORTHO05D004662 5.7e-20 104.0 168 36.9
Migut.D00657 Erythranthe guttata HOM05D004084 ORTHO05D004662 5.7e-20 104.0 158 38.6
Actinidia06961 Actinidia chinensis HOM05D004084 ORTHO05D004662 7.4e-20 103.6 158 40.5
SMO337G0017 Selaginella moellendorffii HOM05D004084 ORTHO05D004662 7.4e-20 103.6 168 34.5
Pp3c26_14330 Physcomitrium patens HOM05D004084 ORTHO05D004662 9.6e-20 103.2 294 31.3
SGA_v2.0_scaffold8G04547 Striga asiatica HOM05D001938 ORTHO05D001965 1.3e-19 102.8 115 44.3
AagrBONN_evm.TU.Sc2ySwM_228.3727 Anthoceros agrestis HOM05D004084 ORTHO05D004662 2.8e-19 101.7 197 32.0
BcaB01g04862 Brassica carinata HOM05D004084 ORTHO05D004662 6.2e-19 100.5 115 42.6
CsaV3_6G039010 Cucumis sativus L. HOM05D004084 ORTHO05D004662 1.1e-18 99.8 158 34.8
Nn7g36697 Nelumbo nucifera HOM05D004084 ORTHO05D004662 1.8e-18 99.0 101 47.5
AL6G30920 Arabidopsis lyrata HOM05D004084 ORTHO05D004662 3.1e-18 98.2 153 41.2
MBI19_g16738_MAGBIO Magnolia biondii HOM05D004084 ORTHO05D004662 5.3e-18 97.4 166 37.3
arahy.Tifrunner.gnm1.ann1.6L2V6B Arachis hypogaea HOM05D004084 ORTHO05D004662 6.9e-18 97.1 159 36.5
CBR_g131 Chara braunii HOM05D004084 ORTHO05D004662 1.5e-17 95.9 213 31.5
Oeu025904.1 Olea europaea HOM05D004084 ORTHO05D004662 3.4e-17 94.7 177 38.4
CDE11G0350 Ceratophyllum demersum HOM05D004084 ORTHO05D004662 2.9e-16 91.7 92 47.8
Peaxi162Scf00032g02420 Petunia axillaris HOM05D004084 ORTHO05D004662 1.9e-15 89.0 233 30.9
PSO384G1598 Papaver somniferum HOM05D004084 ORTHO05D004662 9.3e-15 86.7 171 31.0
Actinidia16378 Actinidia chinensis HOM05D004084 ORTHO05D004662 1.2e-14 86.3 78 46.2
CARHR193510 Cardamine hirsuta HOM05D004084 ORTHO05D004662 7.9e-14 83.6 159 37.1
QL01p017232 Quercus lobata HOM05D004084 ORTHO05D004662 3.0e-13 81.6 142 40.8
Haze_23226 Corylus avellana HOM05D004084 ORTHO05D004662 1.5e-12 79.3 148 36.5
SEGI_38021 Sequoiadendron giganteum HOM05D004084 ORTHO05D004662 1.5e-12 79.3 138 35.5
Cc00_g22040 Coffea canephora HOM05D004084 ORTHO05D004662 1.3e-11 76.3 64 48.4
DCAR_023764 Daucus carota HOM05D000857 ORTHO05D004662 2.2e-11 75.5 161 34.8
MD03G1166700 Malus domestica HOM05D004084 ORTHO05D004662 3.7e-11 74.7 66 50.0
Sabra09G0053400 Salix brachista HOM05D004084 ORTHO05D004662 4.8e-11 74.3 97 39.2
CSS0038115 Camellia sinensis var. sinensis HOM05D004084 ORTHO05D004662 1.4e-10 72.8 65 44.6
COL.COLO4_35673 Corchorus olitorius HOM05D004084 ORTHO05D004662 4.1e-10 71.2 149 41.6
Hund21983 Selenicereus undatus HOM05D004084 ORTHO05D004662 1.1e-07 63.2 162 37.7
EL10Ac8g18304 Beta vulgaris HOM05D004084 ORTHO05D004662 4.2e-07 61.2 70 42.9
CDE11G0877 Ceratophyllum demersum HOM05D004084 ORTHO05D004662 4.2e-07 61.2 115 34.8
BcaB01g05406 Brassica carinata HOM05D004084 ORTHO05D004662 7.9e-06 57.0 170 30.0
CDE11G0903 Ceratophyllum demersum HOM05D004084 ORTHO05D004662 7.9e-06 57.0 134 31.3


User provided reference genes

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