Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PRCOL_00000624 Prasinoderma coloniale HOM05D005437 ORTHO05D006699 0.0e+00 1747.3 976 100.0
AagrBONN_evm.TU.Sc2ySwM_344.1621 Anthoceros agrestis HOM05D005437 ORTHO05D006699 1.7e-60 238.8 944 28.0
SMO144G0105 Selaginella moellendorffii HOM05D005437 ORTHO05D006699 4.3e-59 234.2 948 28.0
CBR_g6363 Chara braunii HOM05D005437 ORTHO05D006699 2.1e-58 231.9 835 31.5
Pp3c5_23340 Physcomitrium patens HOM05D005437 ORTHO05D006699 2.9e-55 221.5 938 27.4
TWI39G0192 Tripterygium wilfordii HOM05D005437 ORTHO05D006699 6.4e-55 220.3 844 27.7
Manes.06G173000 Manihot esculenta HOM05D005437 ORTHO05D006699 9.3e-54 216.5 799 27.4
PGR102G1747 Punica granatum HOM05D005437 ORTHO05D006699 9.3e-54 216.5 951 24.7
COL.COLO4_36739 Corchorus olitorius HOM05D005437 ORTHO05D006699 3.5e-53 214.5 764 27.7
HanXRQChr11g0335011 Helianthus annuus HOM05D005437 ORTHO05D006699 3.5e-53 214.5 809 27.9
Sed0015468 Sechium edule HOM05D005437 ORTHO05D006699 3.5e-53 214.5 835 27.2
C05p14850 Brassica napus HOM05D005437 ORTHO05D006699 1.3e-52 212.6 842 26.5
Eucgr.F01464 Eucalyptus grandis HOM05D005437 ORTHO05D006699 1.3e-52 212.6 954 25.4
THA.LOC104812356 Tarenaya hassleriana HOM05D005437 ORTHO05D006699 1.7e-52 212.2 827 27.0
HPP92_026356 Vanilla planifolia HOM05D005437 ORTHO05D006699 3.0e-52 211.5 961 26.4
BolC5t30200H Brassica oleracea HOM05D005437 ORTHO05D006699 3.9e-52 211.1 843 26.5
PSO675G2460 Papaver somniferum HOM05D005437 ORTHO05D006699 6.6e-52 210.3 843 26.8
Sc20g0003070 Simmondsia chinensis HOM05D005437 ORTHO05D006699 1.5e-51 209.1 829 27.4
Gorai.002G036800 Gossypium raimondii HOM05D005437 ORTHO05D006699 1.9e-51 208.8 829 27.9
CsaV3_6G013680 Cucumis sativus L. HOM05D005437 ORTHO05D006699 2.5e-51 208.4 832 28.0
FvH4_3g15600 Fragaria vesca HOM05D005437 ORTHO05D006699 3.3e-51 208.0 944 25.7
FAN11G3430 Fragaria x ananassa HOM05D005437 ORTHO05D006699 3.3e-51 208.0 944 25.7
Thhalv10006808m.g Eutrema salsugineum HOM05D005437 ORTHO05D006699 4.3e-51 207.6 808 27.4
SEGI_23870 Sequoiadendron giganteum HOM05D005437 ORTHO05D006699 4.3e-51 207.6 820 28.3
EL10Ac9g21866 Beta vulgaris HOM05D005437 ORTHO05D006699 9.6e-51 206.5 836 26.9
ECA236G0150 Erigeron canadensis HOM05D005437 ORTHO05D006699 9.6e-51 206.5 958 26.5
FAN16G0636 Fragaria x ananassa HOM05D005437 ORTHO05D006699 1.3e-50 206.1 944 25.5
AL1G28710 Arabidopsis lyrata HOM05D005437 ORTHO05D006699 1.6e-50 205.7 819 26.7
BraA06t24417Z Brassica rapa HOM05D005437 ORTHO05D006699 1.6e-50 205.7 841 26.5
Mapoly0055s0057 Marchantia polymorpha HOM05D005437 ORTHO05D006699 1.6e-50 205.7 942 26.4
Sp1g14710 Schrenkiella parvula HOM05D005437 ORTHO05D006699 2.1e-50 205.3 834 27.2
RcHm_v2.0_Chr5g0026221 Rosa chinensis HOM05D005437 ORTHO05D006699 3.6e-50 204.5 947 25.7
Peaxi162Scf00452g00721 Petunia axillaris HOM05D005437 ORTHO05D006699 4.8e-50 204.1 835 27.7
CAN.G943.42 Capsicum annuum HOM05D005437 ORTHO05D006699 6.2e-50 203.8 833 27.3
MCO10G344 Micromonas commoda HOM05D005437 ORTHO05D006699 6.2e-50 203.8 1103 28.0
Gohir.D01G027500 Gossypium hirsutum HOM05D005437 ORTHO05D006699 8.1e-50 203.4 828 27.5
Gohir.A01G039700 Gossypium hirsutum HOM05D005437 ORTHO05D006699 1.1e-49 203.0 831 27.1
A06p12540 Brassica napus HOM05D005437 ORTHO05D006699 1.4e-49 202.6 841 26.4
Cc05_g16200 Coffea canephora HOM05D005437 ORTHO05D006699 1.8e-49 202.2 956 26.5
Lj3g0019331 Lotus japonicus HOM05D005437 ORTHO05D006699 1.8e-49 202.2 808 27.2
Carub.0001s1630 Capsella rubella HOM05D005437 ORTHO05D006699 2.4e-49 201.8 820 26.5
FAN21G1213 Fragaria x ananassa HOM05D005437 ORTHO05D006699 2.4e-49 201.8 902 25.2
Thecc.07G149800 Theobroma cacao HOM05D005437 ORTHO05D006699 3.1e-49 201.4 932 25.5
VMungo1127G0204 Vigna mungo HOM05D005437 ORTHO05D006699 3.1e-49 201.4 838 26.7
Os06g0670000 Oryza sativa ssp. japonica HOM05D005437 ORTHO05D006699 4.0e-49 201.1 966 24.5
TPR.G34170 Trifolium pratense HOM05D005437 ORTHO05D006699 4.0e-49 201.1 837 27.2
MELO3C019659.2 Cucumis melo HOM05D005437 ORTHO05D006699 2.0e-48 198.7 956 25.4
Dinv19612 Davidia involucrata HOM05D005437 ORTHO05D006699 2.6e-48 198.4 931 25.6
GSVIVG01020355001 Vitis vinifera HOM05D005437 ORTHO05D006699 3.4e-48 198.0 952 25.2
Aa31LG7G1090 Aethionema arabicum HOM05D005437 ORTHO05D006699 5.8e-48 197.2 866 25.4
CANSAT80G2640 Cannabis sativa HOM05D005437 ORTHO05D006699 5.8e-48 197.2 830 26.1
Prupe.4G138400 Prunus persica HOM05D005437 ORTHO05D006699 7.6e-48 196.8 833 26.3
Rhsim06G0239800 Rhododendron simsii HOM05D005437 ORTHO05D006699 2.9e-47 194.9 848 26.8
Actinidia12783 Actinidia chinensis HOM05D005437 ORTHO05D006699 3.8e-47 194.5 951 25.4
Ca_19805_v3 Cicer arietinum L. HOM05D005437 ORTHO05D006699 3.8e-47 194.5 523 30.0
Sabra07G0053300 Salix brachista HOM05D005437 ORTHO05D006699 6.4e-47 193.7 832 27.3
AT1G16540 Arabidopsis thaliana HOM05D005437 ORTHO05D006699 2.4e-46 191.8 640 28.9
CSS0042223 Camellia sinensis var. sinensis HOM05D005437 ORTHO05D006699 2.4e-46 191.8 935 25.9
Glyma.09G002300 Glycine max HOM05D005437 ORTHO05D006699 2.4e-46 191.8 814 26.7
Solyc07g066480.3 Solanum lycopersicum HOM05D005437 ORTHO05D006699 7.1e-46 190.3 952 25.2
ATR0763G170 Amborella trichopoda HOM05D005437 ORTHO05D006699 1.2e-45 189.5 531 31.1
Lalb_Chr01g0008201 Lupinus albus HOM05D005437 ORTHO05D006699 1.2e-45 189.5 927 24.9
Phvul.011G216100 Phaseolus vulgaris HOM05D005437 ORTHO05D006699 1.2e-45 189.5 529 29.7
Oeu036617.1 Olea europaea HOM05D005437 ORTHO05D006699 1.6e-45 189.1 931 25.3
Psat7g228480 Pisum sativum HOM05D005437 ORTHO05D006699 2.1e-45 188.7 524 30.2
Sopen07g034660 Solanum pennellii HOM05D005437 ORTHO05D006699 4.6e-45 187.6 952 25.5
MD05G1221200 Malus domestica HOM05D005437 ORTHO05D006699 1.0e-44 186.4 821 26.4
Ciclev10004324m.g Citrus clementina HOM05D005437 ORTHO05D006699 1.3e-44 186.0 808 26.2
AUR62016581 Chenopodium quinoa HOM05D005437 ORTHO05D006699 2.3e-44 185.3 849 25.3
Potri.007G066400 Populus trichocarpa HOM05D005437 ORTHO05D006699 5.1e-44 184.1 836 26.3
AUR62011473 Chenopodium quinoa HOM05D005437 ORTHO05D006699 7.4e-43 180.3 531 30.1
Aqoxy1G01551_Aqoxy1G01552 Aquilegia oxysepala HOM05D005437 ORTHO05D006699 1.3e-42 179.5 936 25.7
CiPaw.11G065200 Carya illinoinensis HOM05D005437 ORTHO05D006699 2.1e-42 178.7 530 28.5
Medtr4g030930 Medicago truncatula HOM05D005437 ORTHO05D006699 1.4e-41 176.0 523 29.6
Migut.M01548 Erythranthe guttata HOM05D005437 ORTHO05D006699 2.4e-41 175.3 528 29.5
arahy.Tifrunner.gnm1.ann1.49XUJ3 Arachis hypogaea HOM05D005437 ORTHO05D006699 2.0e-40 172.2 803 25.9
arahy.Tifrunner.gnm1.ann1.K3W397 Arachis hypogaea HOM05D005437 ORTHO05D006699 2.6e-40 171.8 807 26.9
Duzib213G0844 Durio zibethinus HOM05D005437 ORTHO05D006699 5.8e-40 170.6 853 25.7
Lsat_1_v5_gn_7_111601 Lactuca sativa HOM05D005437 ORTHO05D006699 5.8e-40 170.6 518 29.7
Zm00001eb274240 Zea mays HOM05D005437 ORTHO05D006699 5.8e-40 170.6 959 23.5
BcaC05g25518 Brassica carinata HOM05D005437 ORTHO05D006699 3.8e-39 167.9 728 26.0
PGSC0003DMG400022125 Solanum tuberosum HOM05D005437 ORTHO05D006699 3.2e-38 164.9 732 26.6
SalBow8G5394 Salvia bowleyana HOM05D005437 ORTHO05D006699 1.2e-37 162.9 797 27.0
TAR626G0611 Trochodendron aralioides HOM05D005437 ORTHO05D006699 1.2e-37 162.9 408 33.1
Zm00001eb389990 Zea mays HOM05D005437 ORTHO05D006699 4.6e-37 161.0 650 25.2
DCAR_009644 Daucus carota HOM05D005437 ORTHO05D006699 3.0e-36 158.3 621 26.7
FAN25G2633 Fragaria x ananassa HOM05D005437 ORTHO05D006699 3.0e-36 158.3 435 31.7
Hma1.2p1_0637F.1_g193450 Hydrangea macrophylla HOM05D005437 ORTHO05D006699 6.7e-36 157.1 399 32.8
SGA_v2.0_scaffold186G40210 Striga asiatica HOM05D005437 ORTHO05D006699 1.2e-32 146.4 522 28.9
QL04p076801 Quercus lobata HOM05D005437 ORTHO05D006699 4.5e-32 144.4 408 30.6
Nitab4.5_0002321g0070 Nicotiana tabacum HOM05D005437 ORTHO05D006699 7.2e-30 137.1 569 27.1
Cfa026809 Carpinus fangiana HOM05D005437 ORTHO05D006699 6.7e-28 130.6 768 24.9
Duzib268G1426 Durio zibethinus HOM05D005437 ORTHO05D006699 1.9e-27 129.0 453 27.8
Hma1.2p1_0637F.1_g193460 Hydrangea macrophylla HOM05D005437 ORTHO05D006699 1.8e-25 122.5 553 26.2
vmacro11674 Vaccinium macrocarpon HOM05D005437 ORTHO05D006699 1.3e-23 116.3 1042 22.6
Cre03.g152000 Chlamydomonas reinhardtii HOM05D005437 ORTHO05D006699 9.4e-22 110.2 370 32.2
Atru.chr1.169 Acer truncatum HOM05D005437 ORTHO05D006699 1.1e-19 103.2 289 31.5
CDE02G3212 Ceratophyllum demersum HOM05D005437 ORTHO05D006699 8.2e-18 97.1 336 30.1
Atru.chr1.178 Acer truncatum HOM05D005437 ORTHO05D006699 1.4e-17 96.3 193 35.8
Nn7g37999 Nelumbo nucifera HOM05D005437 ORTHO05D006699 4.5e-16 91.3 463 24.2
Cpa.g.sc67.56 Carica papaya HOM05D005437 ORTHO05D006699 7.7e-16 90.5 243 31.3
unitig_748.g7633 Utricularia gibba HOM05D005437 ORTHO05D006699 2.9e-15 88.6 335 29.3
Nitab4.5_0001080g0010 Nicotiana tabacum HOM05D005437 ORTHO05D006699 3.8e-15 88.2 497 23.3
Nn7g37998 Nelumbo nucifera HOM05D005437 ORTHO05D006699 3.2e-14 85.1 207 34.3
Lj8A189G30 Lonicera japonica HOM05D005437 ORTHO05D006699 1.2e-13 83.2 162 36.4
Cre02.g142351 Chlamydomonas reinhardtii HOM05D005437 ORTHO05D006699 6.1e-13 80.9 340 28.2
Lj8A189G28 Lonicera japonica HOM05D005437 ORTHO05D006699 2.3e-12 79.0 235 29.8
CARHR017020 Cardamine hirsuta HOM05D005437 ORTHO05D006699 5.1e-12 77.8 161 34.8
PRCOL_00004579 Prasinoderma coloniale HOM05D003109 ORTHO05D003578 9.7e-11 73.6 372 26.1
Cre09.g389089 Chlamydomonas reinhardtii HOM05D003109 ORTHO05D003578 4.8e-10 71.2 320 22.8
CiPaw.10G105800 Carya illinoinensis HOM05D003109 ORTHO05D003578 7.0e-09 67.4 161 30.4
Haze_08574 Corylus avellana HOM05D005437 ORTHO05D006699 7.7e-08 63.9 70 48.6
CARHR030480 Cardamine hirsuta HOM05D003109 ORTHO05D003578 1.3e-07 63.2 174 29.9
PGR042G1455 Punica granatum HOM05D003109 ORTHO05D003578 1.3e-07 63.2 156 31.4
THA.LOC104798569 Tarenaya hassleriana HOM05D003109 ORTHO05D003578 1.7e-07 62.8 158 32.3
PGR042G3123 Punica granatum HOM05D003109 ORTHO05D003578 2.2e-07 62.4 173 30.1
SMO143G0025 Selaginella moellendorffii HOM05D003109 ORTHO05D003578 2.2e-07 62.4 179 27.9
AagrBONN_evm.TU.Sc2ySwM_228.2820 Anthoceros agrestis HOM05D003109 ORTHO05D003578 5.0e-07 61.2 182 32.4
Cfa001141 Carpinus fangiana HOM05D003109 ORTHO05D003578 5.0e-07 61.2 161 29.8
GSVIVG01012158001 Vitis vinifera HOM05D003109 ORTHO05D003578 5.0e-07 61.2 180 28.9
HanXRQChr10g0286421 Helianthus annuus HOM05D003109 ORTHO05D003578 8.5e-07 60.5 186 28.5
Os09g0560800 Oryza sativa ssp. japonica HOM05D003109 ORTHO05D003578 8.5e-07 60.5 173 31.8
Thhalv10011673m.g Eutrema salsugineum HOM05D003109 ORTHO05D003578 1.5e-06 59.7 160 30.0
FAN21G0114 Fragaria x ananassa HOM05D003109 ORTHO05D003578 1.5e-06 59.7 161 32.3
Haze_05250 Corylus avellana HOM05D003109 ORTHO05D003578 3.2e-06 58.5 180 27.8
HanXRQChr10g0286441 Helianthus annuus HOM05D003109 ORTHO05D003578 3.2e-06 58.5 158 29.1
THA.LOC104811863 Tarenaya hassleriana HOM05D003109 ORTHO05D003578 3.2e-06 58.5 167 29.9
Migut.K00496 Erythranthe guttata HOM05D003109 ORTHO05D003578 4.2e-06 58.2 151 28.5
SGA_v2.0_scaffold341G49369 Striga asiatica HOM05D003109 ORTHO05D003578 4.2e-06 58.2 164 29.9
MD10G1226500 Malus domestica HOM05D003109 ORTHO05D003578 5.5e-06 57.8 182 29.7
arahy.Tifrunner.gnm1.ann1.4IPC1A Arachis hypogaea HOM05D003109 ORTHO05D003578 7.2e-06 57.4 180 27.2
FAN25G0248 Fragaria x ananassa HOM05D003109 ORTHO05D003578 7.2e-06 57.4 161 31.7
Aa31LG6G12320 Aethionema arabicum HOM05D000969 ORTHO05D000899 9.4e-06 57.0 180 27.2
Carub.0001s2928 Capsella rubella HOM05D003109 ORTHO05D003578 9.4e-06 57.0 174 29.9


User provided reference genes

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