Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PRCOL_00000603 Prasinoderma coloniale HOM05D004292 ORTHO05D005206 6.4e-202 707.2 360 100.0
Gohir.A05G309400 Gossypium hirsutum HOM05D004292 ORTHO05D005206 1.4e-23 114.8 168 39.9
Gohir.D05G310300 Gossypium hirsutum HOM05D004292 ORTHO05D005206 1.4e-23 114.8 168 39.9
Gorai.009G330900 Gossypium raimondii HOM05D004292 ORTHO05D005206 1.4e-23 114.8 168 39.9
Manes.17G078500 Manihot esculenta HOM05D004292 ORTHO05D005206 1.4e-23 114.8 168 38.7
MD16G1026500 Malus domestica HOM05D004292 ORTHO05D005206 1.8e-23 114.4 168 38.1
Duzib251G0662 Durio zibethinus HOM05D004292 ORTHO05D005206 3.1e-23 113.6 168 39.3
Sabra10G0081700 Salix brachista HOM05D004292 ORTHO05D005206 5.3e-23 112.8 168 39.3
Actinidia12367 Actinidia chinensis HOM05D004292 ORTHO05D005206 7.0e-23 112.5 168 37.5
MD13G1023800 Malus domestica HOM05D004292 ORTHO05D005206 7.0e-23 112.5 168 38.1
Prupe.1G326900 Prunus persica HOM05D004292 ORTHO05D005206 7.0e-23 112.5 191 36.1
Actinidia36661 Actinidia chinensis HOM05D004292 ORTHO05D005206 9.1e-23 112.1 168 36.9
Potri.010G111300 Populus trichocarpa HOM05D004292 ORTHO05D005206 9.1e-23 112.1 168 39.3
Ah.03g137320 Amaranthus hybridus HOM05D004292 ORTHO05D001279 1.2e-22 111.7 206 34.5
Nitab4.5_0004230g0010 Nicotiana tabacum HOM05D004292 ORTHO05D005206 2.6e-22 110.5 168 38.1
Thecc.02G283600 Theobroma cacao HOM05D004292 ORTHO05D005206 2.6e-22 110.5 168 37.5
Manes.15G129300 Manihot esculenta HOM05D004292 ORTHO05D005206 4.5e-22 109.8 168 37.5
COL.COLO4_13153 Corchorus olitorius HOM05D004292 ORTHO05D005206 5.9e-22 109.4 181 35.4
Lalb_Chr17g0338501 Lupinus albus HOM05D004292 ORTHO05D005206 5.9e-22 109.4 168 36.3
RcHm_v2.0_Chr4g0441581 Rosa chinensis HOM05D004292 ORTHO05D005206 5.9e-22 109.4 168 36.9
Cfa008626 Carpinus fangiana HOM05D004292 ORTHO05D005206 1.0e-21 108.6 181 37.0
Duzib248G1431 Durio zibethinus HOM05D004292 ORTHO05D005206 1.0e-21 108.6 168 37.5
Peaxi162Scf00253g01121 Petunia axillaris HOM05D004292 ORTHO05D005206 1.0e-21 108.6 168 38.1
FAN17G0423 Fragaria x ananassa HOM05D004292 ORTHO05D005206 1.3e-21 108.2 191 36.1
Os08g0433200 Oryza sativa ssp. japonica HOM05D004292 ORTHO05D005206 1.3e-21 108.2 170 35.9
Rhsim09G0096100 Rhododendron simsii HOM05D004292 ORTHO05D005206 1.3e-21 108.2 171 36.8
Dinv14417 Davidia involucrata HOM05D004292 ORTHO05D005206 1.7e-21 107.8 168 36.3
Migut.L00977 Erythranthe guttata HOM05D004292 ORTHO05D005206 1.7e-21 107.8 168 36.9
Sc04g0005360 Simmondsia chinensis HOM05D004292 ORTHO05D005206 1.7e-21 107.8 168 38.7
CSS0026867 Camellia sinensis var. sinensis HOM05D004292 ORTHO05D005206 2.2e-21 107.5 168 37.5
Ca_12594_v3 Cicer arietinum L. HOM05D004292 ORTHO05D005206 2.2e-21 107.5 168 35.1
Haze_10980 Corylus avellana HOM05D004292 ORTHO05D005206 2.2e-21 107.5 168 38.7
Migut.L00354 Erythranthe guttata HOM05D004292 ORTHO05D005206 2.2e-21 107.5 168 35.7
FAN22G2140 Fragaria x ananassa HOM05D004292 ORTHO05D005206 2.2e-21 107.5 191 35.6
Potri.008G130700 Populus trichocarpa HOM05D004292 ORTHO05D005206 2.2e-21 107.5 168 38.1
FAN07G2049 Fragaria x ananassa HOM05D004292 ORTHO05D005206 2.9e-21 107.1 191 35.6
Lj2g0018897 Lotus japonicus HOM05D004292 ORTHO05D005206 2.9e-21 107.1 168 35.1
Phvul.003G031700 Phaseolus vulgaris HOM05D004292 ORTHO05D005206 2.9e-21 107.1 168 35.7
TPR.G36967 Trifolium pratense HOM05D004292 ORTHO05D005206 2.9e-21 107.1 168 36.3
Thhalv10019522m.g Eutrema salsugineum HOM05D004292 ORTHO05D005206 3.8e-21 106.7 168 37.5
Gohir.D01G144600 Gossypium hirsutum HOM05D004292 ORTHO05D005206 3.8e-21 106.7 168 37.5
Gorai.002G178500 Gossypium raimondii HOM05D004292 ORTHO05D005206 3.8e-21 106.7 168 37.5
Medtr1g031620 Medicago truncatula HOM05D004292 ORTHO05D005206 3.8e-21 106.7 168 35.7
QL01p001285 Quercus lobata HOM05D004292 ORTHO05D005206 3.8e-21 106.7 181 35.9
Sed0011413 Sechium edule HOM05D004292 ORTHO05D005206 3.8e-21 106.7 168 36.9
VMungo1215G3121 Vigna mungo HOM05D004292 ORTHO05D005206 3.8e-21 106.7 168 35.1
CANSAT64G1906 Cannabis sativa HOM05D004292 ORTHO05D005206 5.0e-21 106.3 181 36.5
Nn3g18267 Nelumbo nucifera HOM05D004292 ORTHO05D005206 5.0e-21 106.3 168 36.9
PGR119G0156 Punica granatum HOM05D004292 ORTHO05D005206 6.5e-21 105.9 168 35.7
GSVIVG01011737001 Vitis vinifera HOM05D004292 ORTHO05D005206 6.5e-21 105.9 168 37.5
Aqoxy3G00082 Aquilegia oxysepala HOM05D004292 ORTHO05D005206 8.5e-21 105.5 168 35.7
BcaC06g35023 Brassica carinata HOM05D004292 ORTHO05D005206 8.5e-21 105.5 168 36.3
C07p20600 Brassica napus HOM05D004292 ORTHO05D005206 8.5e-21 105.5 168 36.3
Glyma.19G064200 Glycine max HOM05D004292 ORTHO05D005206 8.5e-21 105.5 168 35.7
Psat6g043600 Pisum sativum HOM05D004292 ORTHO05D005206 8.5e-21 105.5 168 35.1
Sp5g26070 Schrenkiella parvula HOM05D004292 ORTHO05D005206 8.5e-21 105.5 168 36.9
Sopen04g002820 Solanum pennellii HOM05D004292 ORTHO05D005206 8.5e-21 105.5 168 36.3
PGSC0003DMG401005954 Solanum tuberosum HOM05D004292 ORTHO05D005206 8.5e-21 105.5 168 36.3
MELO3C005303.2 Cucumis melo HOM05D004292 ORTHO05D005206 1.1e-20 105.1 168 36.9
SalBow8G2865 Salvia bowleyana HOM05D004292 ORTHO05D005206 1.1e-20 105.1 168 35.1
Solyc04g007730.3 Solanum lycopersicum HOM05D004292 ORTHO05D005206 1.1e-20 105.1 168 36.3
TAR374G0923 Trochodendron aralioides HOM05D004292 ORTHO05D005206 1.1e-20 105.1 168 36.3
Atru.chr11.473 Acer truncatum HOM05D004292 ORTHO05D005206 1.5e-20 104.8 168 35.1
ATR0564G234 Amborella trichopoda HOM05D004292 ORTHO05D005206 1.5e-20 104.8 168 36.9
CAN.G150.4 Capsicum annuum HOM05D004292 ORTHO05D005206 1.5e-20 104.8 168 36.9
ClCG01G006270 Citrullus lanatus HOM05D004292 ORTHO05D005206 1.5e-20 104.8 168 36.9
Eucgr.G02180 Eucalyptus grandis HOM05D004292 ORTHO05D005206 1.5e-20 104.8 168 36.9
Lj3C871G6 Lonicera japonica HOM05D004292 ORTHO05D005206 1.5e-20 104.8 168 35.1
THA.LOC104809176 Tarenaya hassleriana HOM05D004292 ORTHO05D005206 1.5e-20 104.8 168 36.3
BcaB03g14168 Brassica carinata HOM05D004292 ORTHO05D005206 1.9e-20 104.4 168 35.7
A07p37330 Brassica napus HOM05D004292 ORTHO05D005206 1.9e-20 104.4 168 36.3
C06p45000 Brassica napus HOM05D004292 ORTHO05D005206 1.9e-20 104.4 168 36.3
BolC6t39558H Brassica oleracea HOM05D004292 ORTHO05D005206 1.9e-20 104.4 168 36.3
BraA07t31292Z Brassica rapa HOM05D004292 ORTHO05D005206 1.9e-20 104.4 168 36.3
CARHR064180 Cardamine hirsuta HOM05D004292 ORTHO05D005206 1.9e-20 104.4 168 35.7
PSO017G6162 Papaver somniferum HOM05D004292 ORTHO05D005206 1.9e-20 104.4 168 35.7
PSO478G0265 Papaver somniferum HOM05D004292 ORTHO05D005206 1.9e-20 104.4 168 35.7
Peaxi162Scf00159g01025 Petunia axillaris HOM05D004292 ORTHO05D005206 1.9e-20 104.4 168 36.9
SGA_v2.0_scaffold234G43615 Striga asiatica HOM05D004292 ORTHO05D005206 1.9e-20 104.4 168 35.7
BolC7t42590H Brassica oleracea HOM05D004292 ORTHO05D005206 2.5e-20 104.0 163 36.2
FvH4_4g32670 Fragaria vesca HOM05D004292 ORTHO05D005206 2.5e-20 104.0 191 34.6
FAN12G2104 Fragaria x ananassa HOM05D004292 ORTHO05D005206 2.5e-20 104.0 191 34.6
SalBow8G2030 Salvia bowleyana HOM05D004292 ORTHO05D005206 2.5e-20 104.0 168 35.1
A07p14020 Brassica napus HOM05D004292 ORTHO05D005206 3.2e-20 103.6 163 35.6
BraA07t29156Z Brassica rapa HOM05D004292 ORTHO05D005206 3.2e-20 103.6 163 35.6
Hund10268 Selenicereus undatus HOM05D004292 ORTHO05D005206 3.2e-20 103.6 171 36.8
BcaC08g46539 Brassica carinata HOM05D004292 ORTHO05D005206 4.2e-20 103.2 168 35.7
Carub.0001s2263 Capsella rubella HOM05D004292 ORTHO05D005206 4.2e-20 103.2 168 35.1
CsaV3_5G028400 Cucumis sativus L. HOM05D004292 ORTHO05D005206 4.2e-20 103.2 168 35.7
Oeu018604.1 Olea europaea HOM05D004292 ORTHO05D005206 4.2e-20 103.2 168 35.7
TWI75G1503 Tripterygium wilfordii HOM05D004292 ORTHO05D005206 4.2e-20 103.2 168 36.3
AL1G36680 Arabidopsis lyrata HOM05D004292 ORTHO05D005206 5.5e-20 102.8 168 35.1
AT1G23110 Arabidopsis thaliana HOM05D004292 ORTHO05D005206 5.5e-20 102.8 168 35.1
CARHR023490 Cardamine hirsuta HOM05D004292 ORTHO05D005206 5.5e-20 102.8 168 35.1
Hma1.2p1_0096F.1_g047700 Hydrangea macrophylla HOM05D004292 ORTHO05D005206 5.5e-20 102.8 168 35.7
Sp1g20550 Schrenkiella parvula HOM05D004292 ORTHO05D005206 5.5e-20 102.8 168 35.7
Ciclev10016392m.g Citrus clementina HOM05D004292 ORTHO05D005206 7.2e-20 102.4 168 35.7
Dinv07664 Davidia involucrata HOM05D004292 ORTHO05D005206 7.2e-20 102.4 168 35.1
AL2G30410 Arabidopsis lyrata HOM05D004292 ORTHO05D005206 9.4e-20 102.1 168 35.1
MSTRG.2160 Avicennia marina HOM05D004292 ORTHO05D005206 9.4e-20 102.1 168 36.3
Cpa.g.c36802 Carica papaya HOM05D004292 ORTHO05D005206 9.4e-20 102.1 175 35.4
Nn4g24213 Nelumbo nucifera HOM05D004292 ORTHO05D005206 1.2e-19 101.7 168 35.7
BcaB03g14853 Brassica carinata HOM05D004292 ORTHO05D005206 1.6e-19 101.3 168 35.7
AT1G70900 Arabidopsis thaliana HOM05D004292 ORTHO05D005206 2.1e-19 100.9 168 35.1
Rhsim09G0095100 Rhododendron simsii HOM05D004292 ORTHO05D005206 2.1e-19 100.9 169 37.3
Carub.0002s1769 Capsella rubella HOM05D004292 ORTHO05D005206 2.7e-19 100.5 168 35.1
ECA233G2687 Erigeron canadensis HOM05D004292 ORTHO05D005206 2.7e-19 100.5 168 35.1
Pp3c24_11420 Physcomitrium patens HOM05D004292 ORTHO05D005206 2.7e-19 100.5 167 38.3
AUR62014183 Chenopodium quinoa HOM05D004292 ORTHO05D005206 3.6e-19 100.1 163 35.0
CiPaw.06G047000 Carya illinoinensis HOM05D004292 ORTHO05D005206 4.7e-19 99.8 168 35.7
Zm00001eb041560 Zea mays HOM05D004292 ORTHO05D005206 4.7e-19 99.8 173 34.7
HanXRQChr12g0364371 Helianthus annuus HOM05D004292 ORTHO05D005206 6.1e-19 99.4 168 34.5
CDE05G3602 Ceratophyllum demersum HOM05D004292 ORTHO05D005206 8.0e-19 99.0 158 36.7
Zm00001eb099420 Zea mays HOM05D004292 ORTHO05D005206 8.0e-19 99.0 168 36.3
SalBow2G3034 Salvia bowleyana HOM05D004292 ORTHO05D005206 1.4e-18 98.2 168 35.1
arahy.Tifrunner.gnm1.ann1.EY5UDZ Arachis hypogaea HOM05D004292 ORTHO05D005206 2.3e-18 97.4 168 33.9
Thhalv10008584m.g Eutrema salsugineum HOM05D004292 ORTHO05D005206 2.3e-18 97.4 191 32.5
Migut.E00438 Erythranthe guttata HOM05D004292 ORTHO05D005206 3.0e-18 97.1 168 35.7
CSS0022047 Camellia sinensis var. sinensis HOM05D004292 ORTHO05D005206 6.7e-18 95.9 166 34.9
HanXRQChr08g0212101 Helianthus annuus HOM05D004292 ORTHO05D005206 8.8e-18 95.5 168 32.7
Mapoly0185s0002 Marchantia polymorpha HOM05D004292 ORTHO05D005206 8.8e-18 95.5 193 32.1
HPP92_009641 Vanilla planifolia HOM05D004292 ORTHO05D005206 1.1e-17 95.1 168 35.1
TAR622G0066 Trochodendron aralioides HOM05D004292 ORTHO05D005206 2.0e-17 94.4 141 36.9
Aa31LG7G7080 Aethionema arabicum HOM05D004292 ORTHO05D005206 5.7e-17 92.8 179 33.5
Ca_12581_v3 Cicer arietinum L. HOM05D004292 ORTHO05D005206 2.8e-16 90.5 150 33.3
arahy.Tifrunner.gnm1.ann1.A6Q8V1 Arachis hypogaea HOM05D004292 ORTHO05D005206 1.1e-15 88.6 168 32.7
Nitab4.5_0000426g0230 Nicotiana tabacum HOM05D004292 ORTHO05D005206 1.1e-15 88.6 139 37.4
Cre03.g173550 Chlamydomonas reinhardtii HOM05D004292 ORTHO05D005206 1.4e-15 88.2 209 31.6
DCAR_023592 Daucus carota HOM05D004292 ORTHO05D005206 1.4e-15 88.2 139 36.7
Lsat_1_v5_gn_8_44580 Lactuca sativa HOM05D004292 ORTHO05D005206 7.0e-15 85.9 168 31.5
Lj6C744T5 Lonicera japonica HOM05D004292 ORTHO05D005206 9.1e-15 85.5 139 34.5
vmacro10650 Vaccinium macrocarpon HOM05D004292 ORTHO05D005206 1.6e-14 84.7 139 34.5
vmacro10653 Vaccinium macrocarpon HOM05D004292 ORTHO05D005206 1.6e-14 84.7 139 34.5
SMO111G0032 Selaginella moellendorffii HOM05D004292 ORTHO05D005206 4.5e-14 83.2 169 32.5
MBI19_g22783_MAGBIO Magnolia biondii HOM05D004292 ORTHO05D005206 1.0e-13 82.0 212 28.8
MBI12_g36036_MAGBIO Magnolia biondii HOM05D004292 ORTHO05D005206 3.2e-12 77.0 139 33.1
Pp3c7_7180 Physcomitrium patens HOM05D004292 ORTHO05D005206 4.2e-12 76.6 133 33.8
Cc11_g08440 Coffea canephora HOM05D004292 ORTHO05D005206 5.5e-12 76.3 108 38.0
Gohir.A01G151400 Gossypium hirsutum HOM05D004292 ORTHO05D005206 1.2e-11 75.1 106 40.6
MD06G1224600 Malus domestica HOM05D004292 ORTHO05D005206 1.4e-07 61.6 77 44.2
C06p45020 Brassica napus HOM05D004292 ORTHO05D005206 2.4e-07 60.8 168 29.8
BolC6t39560H Brassica oleracea HOM05D004292 ORTHO05D005206 2.4e-07 60.8 168 29.8
GSVIVG01038114001 Vitis vinifera HOM05D000242 ORTHO05D000631 9.1e-07 58.9 101 40.6
unitig_699.g19535 Utricularia gibba HOM05D004292 ORTHO05D005206 5.9e-06 56.2 157 28.7


User provided reference genes

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