Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PRCOL_00000503 Prasinoderma coloniale HOM05D006248 ORTHO05D007896 3.0e-148 528.5 265 100.0
Mapoly0168s0025 Marchantia polymorpha HOM05D006248 ORTHO05D007896 1.7e-71 273.5 234 58.5
Cre09.g398289 Chlamydomonas reinhardtii HOM05D006248 ORTHO05D007896 2.8e-69 266.2 262 55.3
Pp3c2_20500 Physcomitrium patens HOM05D006248 ORTHO05D007896 3.6e-69 265.8 255 55.7
Hund24368 Selenicereus undatus HOM05D006248 ORTHO05D007896 3.4e-67 259.2 254 52.8
PGR102G2393 Punica granatum HOM05D006248 ORTHO05D007896 7.5e-67 258.1 229 53.7
arahy.Tifrunner.gnm1.ann1.73F3S2 Arachis hypogaea HOM05D006248 ORTHO05D007896 3.7e-66 255.8 229 55.0
CBR_g21007 Chara braunii HOM05D006248 ORTHO05D007896 6.4e-66 255.0 245 51.4
QL02p093323 Quercus lobata HOM05D006248 ORTHO05D007896 6.4e-66 255.0 229 53.7
arahy.Tifrunner.gnm1.ann1.35XGVT Arachis hypogaea HOM05D006248 ORTHO05D007896 8.3e-66 254.6 229 54.6
Ciclev10008803m.g Citrus clementina HOM05D006248 ORTHO05D007896 1.1e-65 254.2 230 52.6
Manes.14G143900 Manihot esculenta HOM05D006248 ORTHO05D007896 3.2e-65 252.7 229 54.1
Eucgr.C02495 Eucalyptus grandis HOM05D006248 ORTHO05D007896 5.4e-65 251.9 233 51.1
Medtr5g043620 Medicago truncatula HOM05D006248 ORTHO05D007896 1.2e-64 250.8 235 52.8
Glyma.12G163500 Glycine max HOM05D006248 ORTHO05D007896 1.6e-64 250.4 229 52.4
Phvul.007G037000 Phaseolus vulgaris HOM05D006248 ORTHO05D007896 2.1e-64 250.0 229 52.8
ATR0579G167 Amborella trichopoda HOM05D006248 ORTHO05D007896 4.6e-64 248.8 233 52.4
AUR62015459 Chenopodium quinoa HOM05D006248 ORTHO05D007896 4.6e-64 248.8 245 50.6
CANSAT80G1584 Cannabis sativa HOM05D006248 ORTHO05D007896 6.0e-64 248.4 245 49.4
Ca_03171_v3 Cicer arietinum L. HOM05D006248 ORTHO05D007896 6.0e-64 248.4 232 52.2
MSTRG.10698 Avicennia marina HOM05D006248 ORTHO05D007896 7.8e-64 248.1 225 52.0
Nitab4.5_0006523g0010 Nicotiana tabacum HOM05D006248 ORTHO05D007896 7.8e-64 248.1 225 54.2
Psat1g022520 Pisum sativum HOM05D006248 ORTHO05D007896 7.8e-64 248.1 228 52.6
SGA_v2.0_scaffold347G49562 Striga asiatica HOM05D006248 ORTHO05D007896 7.8e-64 248.1 229 52.4
CARHR238450 Cardamine hirsuta HOM05D006248 ORTHO05D007896 1.0e-63 247.7 225 52.4
Glyma.06G220300 Glycine max HOM05D006248 ORTHO05D007896 1.0e-63 247.7 229 52.8
Solyc07g005580.4 Solanum lycopersicum HOM05D006248 ORTHO05D007896 1.3e-63 247.3 225 52.9
Sopen07g001690 Solanum pennellii HOM05D006248 ORTHO05D007896 1.3e-63 247.3 225 52.9
PGSC0003DMG402011138 Solanum tuberosum HOM05D006248 ORTHO05D007896 1.3e-63 247.3 229 52.8
Actinidia38318 Actinidia chinensis HOM05D006248 ORTHO05D007896 1.7e-63 246.9 229 52.0
CANSAT80G0015 Cannabis sativa HOM05D006248 ORTHO05D007896 1.7e-63 246.9 245 49.0
SalBow1G5186 Salvia bowleyana HOM05D006248 ORTHO05D007896 1.7e-63 246.9 229 51.1
Sed0009955 Sechium edule HOM05D006248 ORTHO05D007896 1.7e-63 246.9 229 52.4
GSVIVG01023612001 Vitis vinifera HOM05D006248 ORTHO05D007896 2.3e-63 246.5 233 49.8
MBI04_g39114_MAGBIO Magnolia biondii HOM05D006248 ORTHO05D007896 3.0e-63 246.1 246 51.2
Nitab4.5_0005147g0010 Nicotiana tabacum HOM05D006248 ORTHO05D007896 3.9e-63 245.7 222 54.1
Os10g0497100 Oryza sativa ssp. japonica HOM05D006248 ORTHO05D007896 3.9e-63 245.7 251 48.2
Sed0021098 Sechium edule HOM05D006248 ORTHO05D007896 3.9e-63 245.7 229 51.5
Peaxi162Scf00401g00615 Petunia axillaris HOM05D006248 ORTHO05D007896 5.1e-63 245.4 233 51.9
TPR.G3534 Trifolium pratense HOM05D006248 ORTHO05D007896 5.1e-63 245.4 232 52.2
TAR374G0826 Trochodendron aralioides HOM05D006248 ORTHO05D007896 6.6e-63 245.0 229 52.4
Cc06_g14900 Coffea canephora HOM05D006248 ORTHO05D007896 8.6e-63 244.6 238 49.6
SMO367G0591 Selaginella moellendorffii HOM05D006248 ORTHO05D007896 8.6e-63 244.6 206 58.3
EL10Ac3g05888 Beta vulgaris HOM05D006248 ORTHO05D007896 1.1e-62 244.2 253 48.6
AL7G21560 Arabidopsis lyrata HOM05D006248 ORTHO05D007896 1.5e-62 243.8 243 49.0
Nn7g36251 Nelumbo nucifera HOM05D006248 ORTHO05D007896 1.5e-62 243.8 221 52.5
Lalb_Chr08g0234181 Lupinus albus HOM05D006248 ORTHO05D007896 2.5e-62 243.0 229 51.5
Oeu054273.3 Olea europaea HOM05D006248 ORTHO05D007896 2.5e-62 243.0 236 50.8
ClCG02G020550 Citrullus lanatus HOM05D006248 ORTHO05D007896 4.3e-62 242.3 229 51.1
Carub.0007s0999 Capsella rubella HOM05D006248 ORTHO05D007896 5.6e-62 241.9 243 49.0
MELO3C008959.2 Cucumis melo HOM05D006248 ORTHO05D007896 7.3e-62 241.5 229 51.5
Thecc.09G029500 Theobroma cacao HOM05D006248 ORTHO05D007896 7.3e-62 241.5 229 50.2
TWI09G0649 Tripterygium wilfordii HOM05D006248 ORTHO05D007896 7.3e-62 241.5 229 49.8
CiPaw.16G110600 Carya illinoinensis HOM05D006248 ORTHO05D007896 9.5e-62 241.1 225 51.6
DCAR_019396 Daucus carota HOM05D006248 ORTHO05D007896 1.2e-61 240.7 249 49.0
FAN26G2974 Fragaria x ananassa HOM05D000238 ORTHO05D007896 1.2e-61 240.7 237 49.8
Sp7g28450 Schrenkiella parvula HOM05D006248 ORTHO05D007896 1.6e-61 240.4 243 48.1
HPP92_007369 Vanilla planifolia HOM05D006248 ORTHO05D007896 1.6e-61 240.4 233 50.6
Duzib168G1034 Durio zibethinus HOM05D006248 ORTHO05D007896 2.8e-61 239.6 241 48.1
Potri.006G183700 Populus trichocarpa HOM05D006248 ORTHO05D007896 2.8e-61 239.6 249 48.2
Cfa020823 Carpinus fangiana HOM05D006248 ORTHO05D007896 4.7e-61 238.8 229 50.7
Aqoxy2G03376 Aquilegia oxysepala HOM05D006248 ORTHO05D007896 6.2e-61 238.4 252 50.4
CsaV3_2G008470 Cucumis sativus L. HOM05D006248 ORTHO05D007896 6.2e-61 238.4 229 50.7
CsaV3_4G030910 Cucumis sativus L. HOM05D006248 ORTHO05D007896 6.2e-61 238.4 229 51.1
Lj7A459G62 Lonicera japonica HOM05D006248 ORTHO05D007896 6.2e-61 238.4 233 49.8
BcaNung04566 Brassica carinata HOM05D006248 ORTHO05D007896 8.1e-61 238.0 243 47.3
Haze_19202 Corylus avellana HOM05D006248 ORTHO05D007896 8.1e-61 238.0 229 50.2
Rhsim01G0033000 Rhododendron simsii HOM05D006248 ORTHO05D007896 8.1e-61 238.0 233 48.5
Zm00001eb220920 Zea mays HOM05D006248 ORTHO05D007896 8.1e-61 238.0 229 48.9
CAN.G160.64 Capsicum annuum HOM05D006248 ORTHO05D007896 1.1e-60 237.7 256 47.7
AT4G30580 Arabidopsis thaliana HOM05D006248 ORTHO05D007896 1.4e-60 237.3 243 49.0
CSS0008954 Camellia sinensis var. sinensis HOM05D006248 ORTHO05D007896 1.4e-60 237.3 229 51.1
FAN23G2094 Fragaria x ananassa HOM05D000238 ORTHO05D001043 1.4e-60 237.3 237 48.5
A03p60090 Brassica napus HOM05D006248 ORTHO05D007896 1.8e-60 236.9 243 47.3
BraA03t15055Z Brassica rapa HOM05D006248 ORTHO05D007896 1.8e-60 236.9 243 47.3
BcaNung00567 Brassica carinata HOM05D006248 ORTHO05D007896 2.4e-60 236.5 243 47.3
BolC7t46261H Brassica oleracea HOM05D006248 ORTHO05D007896 2.4e-60 236.5 243 47.3
FvH4_1g00880 Fragaria vesca HOM05D006248 ORTHO05D007896 2.4e-60 236.5 237 48.5
Gohir.D05G054900 Gossypium hirsutum HOM05D006248 ORTHO05D007896 2.4e-60 236.5 225 50.7
Gorai.009G056600 Gossypium raimondii HOM05D006248 ORTHO05D007896 2.4e-60 236.5 244 48.4
SHI18557 Sapria himalayana HOM05D006248 ORTHO05D007896 3.1e-60 236.1 233 49.4
THA.LOC104803540 Tarenaya hassleriana HOM05D006248 ORTHO05D007896 3.1e-60 236.1 250 46.8
Lj6g0025769 Lotus japonicus HOM05D006248 ORTHO05D007896 4.0e-60 235.7 229 49.8
CiPaw.15G168100 Carya illinoinensis HOM05D006248 ORTHO05D007896 5.2e-60 235.3 229 51.1
Prupe.7G263300 Prunus persica HOM05D006248 ORTHO05D007896 8.9e-60 234.6 237 48.9
RcHm_v2.0_Chr2g0085591 Rosa chinensis HOM05D006248 ORTHO05D007896 1.2e-59 234.2 237 48.9
Migut.K00321 Erythranthe guttata HOM05D006248 ORTHO05D007896 2.0e-59 233.4 225 48.0
Cpa.g.sc46.160 Carica papaya HOM05D006248 ORTHO05D007896 2.6e-59 233.0 210 53.3
Dinv41376 Davidia involucrata HOM05D000122 ORTHO05D000139 3.4e-59 232.6 202 55.0
Gohir.A05G053300 Gossypium hirsutum HOM05D006248 ORTHO05D007896 3.4e-59 232.6 244 47.5
HanXRQChr15g0490751 Helianthus annuus HOM05D006248 ORTHO05D007896 3.4e-59 232.6 229 48.9
Hma1.2p1_0222F.1_g093600 Hydrangea macrophylla HOM05D006248 ORTHO05D007896 4.4e-59 232.3 251 49.4
Lsat_1_v5_gn_4_165100 Lactuca sativa HOM05D006248 ORTHO05D007896 5.8e-59 231.9 233 47.6
PSO384G3884 Papaver somniferum HOM05D006248 ORTHO05D007896 5.8e-59 231.9 233 50.2
Aa31LG2G19940 Aethionema arabicum HOM05D006248 ORTHO05D007896 9.9e-59 231.1 252 46.0
Duzib187G1891 Durio zibethinus HOM05D006248 ORTHO05D007896 1.3e-58 230.7 241 46.9
Sc06g0007960 Simmondsia chinensis HOM05D006248 ORTHO05D007896 1.7e-58 230.3 214 51.4
Thhalv10025500m.g Eutrema salsugineum HOM05D006248 ORTHO05D007896 2.2e-58 229.9 243 47.3
C07p58030 Brassica napus HOM05D002357 ORTHO05D007896 2.9e-58 229.6 232 47.4
HanXRQChr14g0448981 Helianthus annuus HOM05D006248 ORTHO05D007896 3.8e-58 229.2 229 47.2
PSO339G1376 Papaver somniferum HOM05D006248 ORTHO05D007896 6.4e-58 228.4 233 49.8
Lsat_1_v5_gn_2_85220 Lactuca sativa HOM05D006248 ORTHO05D007896 1.4e-57 227.3 214 49.1
ECA238G3803 Erigeron canadensis HOM05D006248 ORTHO05D007896 1.9e-57 226.9 229 47.6
MD15G1144400 Malus domestica HOM05D006248 ORTHO05D007896 3.2e-57 226.1 237 48.1
arahy.Tifrunner.gnm1.ann1.VIT8JQ Arachis hypogaea HOM05D006248 ORTHO05D007896 7.8e-56 221.5 183 56.8
CDE11G0689 Ceratophyllum demersum HOM05D006248 ORTHO05D007896 7.8e-56 221.5 195 55.9
Atru.chr7.37 Acer truncatum HOM05D006248 ORTHO05D007896 1.0e-55 221.1 233 46.4
MCO11G046 Micromonas commoda HOM05D006248 ORTHO05D007896 6.6e-55 218.4 204 54.4
vmacro16799 Vaccinium macrocarpon HOM05D006248 ORTHO05D007896 1.3e-53 214.2 198 50.5
Sabra06G0139600 Salix brachista HOM05D006248 ORTHO05D007896 1.8e-52 210.3 299 38.8
Gorai.010G113400 Gossypium raimondii HOM05D006248 ORTHO05D007896 5.3e-52 208.8 225 43.6
Gohir.D06G098450 Gossypium hirsutum HOM05D006248 ORTHO05D007896 6.9e-52 208.4 225 43.6
Gohir.A06G097800 Gossypium hirsutum HOM05D006248 ORTHO05D007896 2.6e-51 206.5 225 43.6
VMungo0720G3169 Vigna mungo HOM05D006248 ORTHO05D007896 5.8e-51 205.3 319 36.4
unitig_746.g26565 Utricularia gibba HOM05D006248 ORTHO05D007896 8.4e-50 201.4 199 50.8
Actinidia27193 Actinidia chinensis HOM05D006248 ORTHO05D007896 1.0e-47 194.5 229 47.2
AagrBONN_evm.TU.Sc2ySwM_368.2656 Anthoceros agrestis HOM05D006248 ORTHO05D007896 7.4e-38 161.8 126 61.1
MD02G1007100 Malus domestica HOM05D006248 ORTHO05D007896 1.5e-27 127.5 123 49.6
COL.COLO4_18812 Corchorus olitorius HOM05D006248 ORTHO05D007896 4.5e-27 125.9 119 49.6
Eucgr.C02538 Eucalyptus grandis HOM05D006248 ORTHO05D007896 7.6e-27 125.2 110 52.7
FAN28G2468 Fragaria x ananassa HOM05D000122 ORTHO05D000139 5.5e-25 119.0 195 36.4
PRCOL_00006194 Prasinoderma coloniale HOM05D006248 ORTHO05D010429 8.5e-18 95.1 215 34.0
AagrBONN_evm.TU.Sc2ySwM_362.1593 Anthoceros agrestis HOM05D006248 ORTHO05D007896 2.7e-16 90.1 160 38.1
Hund24348 Selenicereus undatus HOM05D006248 ORTHO05D007896 7.9e-16 88.6 83 50.6
Hma1.2p1_1162F.1_g262620 Hydrangea macrophylla HOM05D008272 ORTHO05D010429 1.4e-15 87.8 116 38.8
QL08p010511 Quercus lobata HOM05D008272 ORTHO05D010429 1.8e-15 87.4 226 30.1
HPP92_011139 Vanilla planifolia HOM05D008272 ORTHO05D010429 3.9e-15 86.3 192 31.2
GSVIVG01037640001 Vitis vinifera HOM05D008272 ORTHO05D010429 8.8e-15 85.1 134 38.8
BcaNung04570 Brassica carinata HOM05D006248 ORTHO05D007896 2.0e-14 84.0 83 49.4
Gohir.A01G079200 Gossypium hirsutum HOM05D008272 ORTHO05D010429 2.0e-14 84.0 116 38.8
arahy.Tifrunner.gnm1.ann1.MV6CSW Arachis hypogaea HOM05D008272 ORTHO05D010429 4.3e-14 82.8 139 34.5
arahy.Tifrunner.gnm1.ann1.UDA7AK Arachis hypogaea HOM05D008272 ORTHO05D010429 4.3e-14 82.8 139 34.5
CsaV3_3G005170 Cucumis sativus L. HOM05D008272 ORTHO05D010429 5.7e-14 82.4 185 32.4
COL.COLO4_09657 Corchorus olitorius HOM05D008272 ORTHO05D010429 7.4e-14 82.0 119 39.5
Lalb_Chr17g0348421 Lupinus albus HOM05D008272 ORTHO05D010429 7.4e-14 82.0 123 35.0
Thecc.07G038700 Theobroma cacao HOM05D008272 ORTHO05D010429 7.4e-14 82.0 134 37.3
unitig_62.g23281 Utricularia gibba HOM05D008272 ORTHO05D010429 7.4e-14 82.0 194 28.4
Cpa.g.sc97.8 Carica papaya HOM05D008272 ORTHO05D010429 9.7e-14 81.6 188 32.4
CiPaw.11G188800 Carya illinoinensis HOM05D008272 ORTHO05D010429 9.7e-14 81.6 194 31.4
CiPaw.12G129300 Carya illinoinensis HOM05D008272 ORTHO05D010429 9.7e-14 81.6 116 36.2
RcHm_v2.0_Chr5g0039361 Rosa chinensis HOM05D008272 ORTHO05D010429 1.3e-13 81.3 116 37.9
MELO3C025383.2 Cucumis melo HOM05D008272 ORTHO05D010429 1.7e-13 80.9 198 30.3
VMungo0540G1205 Vigna mungo HOM05D008272 ORTHO05D010429 1.7e-13 80.9 144 33.3
Os04g0625200 Oryza sativa ssp. japonica HOM05D008272 ORTHO05D010429 2.2e-13 80.5 156 32.1
ClCG10G005430 Citrullus lanatus HOM05D008272 ORTHO05D010429 4.8e-13 79.3 218 29.4
Migut.M01769 Erythranthe guttata HOM05D008272 ORTHO05D010429 4.8e-13 79.3 134 35.1
Gohir.D01G066300 Gossypium hirsutum HOM05D008272 ORTHO05D010429 4.8e-13 79.3 197 30.5
Hund01995 Selenicereus undatus HOM05D008272 ORTHO05D010429 1.4e-12 77.8 139 33.8
ATR0752G027 Amborella trichopoda HOM05D008272 ORTHO05D010429 1.8e-12 77.4 131 35.1
Ciclev10008983m.g Citrus clementina HOM05D008272 ORTHO05D010429 1.8e-12 77.4 234 27.4
Duzib170G0415 Durio zibethinus HOM05D008272 ORTHO05D010429 1.8e-12 77.4 200 29.5
Manes.15G072400 Manihot esculenta HOM05D008272 ORTHO05D010429 1.8e-12 77.4 133 34.6
Potri.011G138900 Populus trichocarpa HOM05D008272 ORTHO05D010429 1.8e-12 77.4 188 30.9
Thecc.07G038600 Theobroma cacao HOM05D008272 ORTHO05D010429 1.8e-12 77.4 200 30.0
Eucgr.F00768 Eucalyptus grandis HOM05D008272 ORTHO05D010429 4.1e-12 76.3 131 33.6
VMungo0647G0594 Vigna mungo HOM05D008272 ORTHO05D010429 4.1e-12 76.3 213 27.2
FAN24G3338 Fragaria x ananassa HOM05D008272 ORTHO05D010429 5.3e-12 75.9 187 28.9
Hund24363 Selenicereus undatus HOM05D006248 ORTHO05D007896 5.3e-12 75.9 62 56.5
Hund24364 Selenicereus undatus HOM05D006248 ORTHO05D007896 5.3e-12 75.9 62 56.5
Eucgr.F03464 Eucalyptus grandis HOM05D008272 ORTHO05D010429 6.9e-12 75.5 199 29.1
Lj6g0015066 Lotus japonicus HOM05D001145 ORTHO05D001415 6.9e-12 75.5 95 41.1
Lj1A872T54 Lonicera japonica HOM05D008272 ORTHO05D010429 2.0e-11 73.9 137 34.3
PRCOL_00003374 Prasinoderma coloniale HOM05D008272 ORTHO05D010429 2.0e-11 73.9 123 34.1
Duzib213G0361 Durio zibethinus HOM05D008272 ORTHO05D010429 3.4e-11 73.2 197 26.9
PGR083G1743 Punica granatum HOM05D008272 ORTHO05D010429 3.4e-11 73.2 115 31.3
EL10Ac4g07813 Beta vulgaris HOM05D008272 ORTHO05D010429 2.2e-10 70.5 192 29.2
SMO119G0124 Selaginella moellendorffii HOM05D008272 ORTHO05D010429 3.8e-10 69.7 201 27.9
Gorai.002G088200 Gossypium raimondii HOM05D008272 ORTHO05D010429 6.5e-10 68.9 197 29.4
HPP92_007364 Vanilla planifolia HOM05D006248 ORTHO05D007896 1.9e-09 67.4 66 51.5
Cc05_g13720 Coffea canephora HOM05D008272 ORTHO05D010429 2.5e-09 67.0 201 29.9
Sabra11G0124700 Salix brachista HOM05D008272 ORTHO05D010429 5.5e-09 65.9 93 36.6
Hund23252 Selenicereus undatus HOM05D008272 ORTHO05D010429 1.2e-08 64.7 269 24.2
Sc16g0006090 Simmondsia chinensis HOM05D008272 ORTHO05D010429 2.1e-08 63.9 129 31.0
Nn004s41404 Nelumbo nucifera HOM05D008272 ORTHO05D010429 2.7e-08 63.5 159 30.2
Sabra11G0124400 Salix brachista HOM05D008272 ORTHO05D010429 2.7e-08 63.5 112 33.0
unitig_578.g15997 Utricularia gibba HOM05D008272 ORTHO05D010429 3.6e-08 63.2 122 31.1
FvH4_2g04690 Fragaria vesca HOM05D008272 ORTHO05D010429 6.1e-08 62.4 95 34.7
Hund14975 Selenicereus undatus HOM05D008272 ORTHO05D010429 1.8e-07 60.8 184 26.6
TAR628G0330 Trochodendron aralioides HOM05D003844 ORTHO05D004534 3.0e-07 60.1 151 29.8
Cc10_g03240 Coffea canephora HOM05D003844 ORTHO05D004534 2.6e-06 57.0 131 32.8
CDE07G1101 Ceratophyllum demersum HOM05D003844 ORTHO05D004534 5.7e-06 55.8 132 32.6


User provided reference genes

Program Settings