Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PRCOL_00000466 Prasinoderma coloniale HOM05D004740 ORTHO05D005991 2.3e-277 958.4 511 100.0
Cre02.g088250 Chlamydomonas reinhardtii HOM05D004740 ORTHO05D005991 4.7e-134 482.3 615 50.9
MCO04G051 Micromonas commoda HOM05D004740 ORTHO05D005991 5.0e-99 365.9 307 61.2
Cre14.g621650 Chlamydomonas reinhardtii HOM05D004740 ORTHO05D005991 8.0e-73 278.9 295 50.2
Os03g0297400 Oryza sativa ssp. japonica HOM05D004740 ORTHO05D005991 9.7e-71 271.9 294 49.0
Mapoly0009s0078 Marchantia polymorpha HOM05D004740 ORTHO05D005991 2.8e-70 270.4 294 49.0
arahy.Tifrunner.gnm1.ann1.FJ253B Arachis hypogaea HOM05D004740 ORTHO05D005991 8.2e-70 268.9 294 47.6
arahy.Tifrunner.gnm1.ann1.MX8U3M Arachis hypogaea HOM05D004740 ORTHO05D005991 1.8e-69 267.7 294 47.3
arahy.Tifrunner.gnm1.ann1.T9C115 Arachis hypogaea HOM05D004740 ORTHO05D005991 2.4e-69 267.3 294 47.3
Gohir.A03G025700 Gossypium hirsutum HOM05D004740 ORTHO05D005991 5.3e-69 266.2 294 47.6
THA.LOC104800771 Tarenaya hassleriana HOM05D004740 ORTHO05D005991 5.3e-69 266.2 294 48.0
Dinv28694 Davidia involucrata HOM05D004740 ORTHO05D005991 9.1e-69 265.4 294 48.3
Thecc.09G357100 Theobroma cacao HOM05D004740 ORTHO05D005991 1.2e-68 265.0 294 47.3
CsaV3_1G036540 Cucumis sativus L. HOM05D004740 ORTHO05D005991 1.6e-68 264.6 294 47.3
Gorai.003G150000 Gossypium raimondii HOM05D004740 ORTHO05D005991 1.6e-68 264.6 294 47.3
Sp4g12790 Schrenkiella parvula HOM05D004740 ORTHO05D005991 1.6e-68 264.6 294 47.6
COL.COLO4_11143 Corchorus olitorius HOM05D004740 ORTHO05D005991 2.7e-68 263.8 294 46.9
Gohir.D03G142800 Gossypium hirsutum HOM05D004740 ORTHO05D005991 2.7e-68 263.8 294 47.3
PGR102G2346 Punica granatum HOM05D004740 ORTHO05D005991 2.7e-68 263.8 294 47.6
MELO3C020514.2 Cucumis melo HOM05D004740 ORTHO05D005991 3.5e-68 263.5 294 46.9
Medtr3g031380 Medicago truncatula HOM05D004740 ORTHO05D005991 3.5e-68 263.5 294 47.3
Sed0001589 Sechium edule HOM05D004740 ORTHO05D005991 3.5e-68 263.5 294 46.6
Hund29009 Selenicereus undatus HOM05D004740 ORTHO05D005991 4.5e-68 263.1 294 47.3
Hund29013 Selenicereus undatus HOM05D004740 ORTHO05D005991 4.5e-68 263.1 294 47.3
Thhalv10016751m.g Eutrema salsugineum HOM05D004740 ORTHO05D005991 5.9e-68 262.7 294 46.9
Lalb_Chr18g0051371 Lupinus albus HOM05D004740 ORTHO05D005991 5.9e-68 262.7 296 46.3
AT2G30200 Arabidopsis thaliana HOM05D004740 ORTHO05D005991 7.7e-68 262.3 307 45.9
BolC3t14364H Brassica oleracea HOM05D004740 ORTHO05D005991 7.7e-68 262.3 294 47.6
CARHR123500 Cardamine hirsuta HOM05D004740 ORTHO05D005991 7.7e-68 262.3 294 46.9
Ciclev10028558m.g Citrus clementina HOM05D004740 ORTHO05D005991 7.7e-68 262.3 294 46.6
DCAR_018228 Daucus carota HOM05D004740 ORTHO05D005991 7.7e-68 262.3 294 47.6
Eucgr.J01859 Eucalyptus grandis HOM05D004740 ORTHO05D005991 7.7e-68 262.3 294 48.0
Glyma.18G057700 Glycine max HOM05D004740 ORTHO05D005991 7.7e-68 262.3 294 46.6
Haze_24407 Corylus avellana HOM05D004740 ORTHO05D005991 1.0e-67 261.9 294 46.6
Duzib168G1324 Durio zibethinus HOM05D004740 ORTHO05D005991 1.0e-67 261.9 294 46.6
FvH4_3g39690 Fragaria vesca HOM05D004740 ORTHO05D005991 1.0e-67 261.9 294 48.0
Psat5g153440 Pisum sativum HOM05D004740 ORTHO05D005991 1.0e-67 261.9 294 46.9
THA.LOC104826277 Tarenaya hassleriana HOM05D004740 ORTHO05D005991 1.0e-67 261.9 294 47.3
AL4G25030 Arabidopsis lyrata HOM05D004740 ORTHO05D005991 1.3e-67 261.5 294 46.9
MD11G1056800 Malus domestica HOM05D004740 ORTHO05D005991 1.3e-67 261.5 294 47.3
MCO01G413 Micromonas commoda HOM05D004740 ORTHO05D005991 1.3e-67 261.5 297 47.5
SGA_v2.0_scaffold146G36123 Striga asiatica HOM05D004740 ORTHO05D005991 1.3e-67 261.5 294 46.6
TWI75G0989 Tripterygium wilfordii HOM05D004740 ORTHO05D005991 1.3e-67 261.5 294 47.6
CiPaw.13G069800 Carya illinoinensis HOM05D004740 ORTHO05D005991 1.7e-67 261.2 294 46.6
MD03G1055800 Malus domestica HOM05D004740 ORTHO05D005991 1.7e-67 261.2 294 46.9
TAR623G0659 Trochodendron aralioides HOM05D004740 ORTHO05D005991 1.7e-67 261.2 294 46.9
Ca_15002_v3 Cicer arietinum L. HOM05D004740 ORTHO05D005991 2.2e-67 260.8 294 46.6
Manes.18G127700 Manihot esculenta HOM05D004740 ORTHO05D005991 2.2e-67 260.8 294 47.6
RcHm_v2.0_Chr5g0071571 Rosa chinensis HOM05D004740 ORTHO05D005991 2.2e-67 260.8 294 47.6
BcaC02g08041 Brassica carinata HOM05D004740 ORTHO05D005991 2.9e-67 260.4 294 46.3
Carub.0004s1135 Capsella rubella HOM05D004740 ORTHO05D005991 2.9e-67 260.4 294 46.9
Pp3c20_19160 Physcomitrium patens HOM05D004740 ORTHO05D005991 2.9e-67 260.4 300 47.7
QL01p026440 Quercus lobata HOM05D004740 ORTHO05D005991 2.9e-67 260.4 294 45.9
BraA04t17832Z Brassica rapa HOM05D004740 ORTHO05D005991 3.8e-67 260.0 294 46.3
Ah.15g096090 Amaranthus hybridus HOM05D004740 ORTHO05D005991 5.0e-67 259.6 296 46.6
BcaB02g10307 Brassica carinata HOM05D004740 ORTHO05D005991 5.0e-67 259.6 294 46.3
CSS0045632 Camellia sinensis var. sinensis HOM05D004740 ORTHO05D005991 5.0e-67 259.6 294 45.9
Lj6g0008641 Lotus japonicus HOM05D004740 ORTHO05D005991 5.0e-67 259.6 294 46.3
arahy.Tifrunner.gnm1.ann1.C8ZV0S Arachis hypogaea HOM05D004740 ORTHO05D005991 6.5e-67 259.2 284 47.9
Cfa011772 Carpinus fangiana HOM05D004740 ORTHO05D005991 6.5e-67 259.2 294 46.6
CDE06G2756 Ceratophyllum demersum HOM05D004740 ORTHO05D005991 6.5e-67 259.2 294 46.6
AUR62001878 Chenopodium quinoa HOM05D004740 ORTHO05D005991 6.5e-67 259.2 294 46.6
HanXRQChr01g0012131 Helianthus annuus HOM05D004740 ORTHO05D005991 6.5e-67 259.2 294 46.3
C04p59110 Brassica napus HOM05D004740 ORTHO05D005991 8.5e-67 258.8 294 45.9
BolC4t27422H Brassica oleracea HOM05D004740 ORTHO05D005991 8.5e-67 258.8 294 45.9
Glyma.11G164500 Glycine max HOM05D004740 ORTHO05D005991 1.1e-66 258.5 294 46.6
Lj2A1092T52 Lonicera japonica HOM05D004740 ORTHO05D005991 1.1e-66 258.5 294 46.9
Peaxi162Scf00055g00057 Petunia axillaris HOM05D004740 ORTHO05D005991 1.1e-66 258.5 294 46.3
Phvul.006G073300 Phaseolus vulgaris HOM05D004740 ORTHO05D005991 1.5e-66 258.1 294 46.3
Rhsim13G0064700 Rhododendron simsii HOM05D004740 ORTHO05D005991 1.5e-66 258.1 294 46.6
HPP92_013770 Vanilla planifolia HOM05D004740 ORTHO05D005991 1.5e-66 258.1 296 48.0
Aa31LG5G6500 Aethionema arabicum HOM05D004740 ORTHO05D005991 1.9e-66 257.7 302 46.4
Aqoxy2G00789 Aquilegia oxysepala HOM05D004740 ORTHO05D005991 1.9e-66 257.7 294 47.3
A05p15240 Brassica napus HOM05D004740 ORTHO05D005991 1.9e-66 257.7 295 46.8
BraA05t20443Z Brassica rapa HOM05D004740 ORTHO05D005991 1.9e-66 257.7 295 46.8
Prupe.6G048900 Prunus persica HOM05D004740 ORTHO05D005991 1.9e-66 257.7 294 46.3
vmacro02923 Vaccinium macrocarpon HOM05D004740 ORTHO05D005991 1.9e-66 257.7 294 46.6
EL10Ac7g15913 Beta vulgaris HOM05D004740 ORTHO05D005991 2.5e-66 257.3 296 45.9
C04p20390 Brassica napus HOM05D004740 ORTHO05D005991 2.5e-66 257.3 295 46.8
BolC4t23568H Brassica oleracea HOM05D004740 ORTHO05D005991 2.5e-66 257.3 295 46.8
ECA248G3413 Erigeron canadensis HOM05D004740 ORTHO05D005991 2.5e-66 257.3 294 45.6
Migut.N00764 Erythranthe guttata HOM05D004740 ORTHO05D005991 3.2e-66 256.9 294 46.3
PRCOL_00005899 Prasinoderma coloniale HOM05D004740 ORTHO05D005991 3.2e-66 256.9 293 46.4
SalBow2G1640 Salvia bowleyana HOM05D004740 ORTHO05D005991 3.2e-66 256.9 294 46.6
BcaC02g11103 Brassica carinata HOM05D004740 ORTHO05D005991 4.2e-66 256.5 294 45.9
TAR633G1387 Trochodendron aralioides HOM05D004740 ORTHO05D005991 4.2e-66 256.5 294 46.6
BcaB06g28350 Brassica carinata HOM05D004740 ORTHO05D005991 5.5e-66 256.1 294 45.6
Nitab4.5_0002737g0070 Nicotiana tabacum HOM05D004740 ORTHO05D005991 5.5e-66 256.1 297 45.1
Potri.009G077800 Populus trichocarpa HOM05D004740 ORTHO05D005991 5.5e-66 256.1 294 46.6
Sopen01g002970 Solanum pennellii HOM05D004740 ORTHO05D005991 5.5e-66 256.1 294 45.2
CAN.G911.42 Capsicum annuum HOM05D004740 ORTHO05D005991 7.2e-66 255.8 294 44.9
Solyc01g006980.4 Solanum lycopersicum HOM05D004740 ORTHO05D005991 7.2e-66 255.8 294 44.9
PGSC0003DMG400021362 Solanum tuberosum HOM05D004740 ORTHO05D005991 7.2e-66 255.8 294 44.9
MSTRG.17889 Avicennia marina HOM05D004740 ORTHO05D005991 9.4e-66 255.4 294 45.2
SMO200G0259 Selaginella moellendorffii HOM05D004740 ORTHO05D005991 1.6e-65 254.6 310 46.1
VMungo0540G0639 Vigna mungo HOM05D004740 ORTHO05D005991 1.6e-65 254.6 294 46.3
Lalb_Chr15g0083211 Lupinus albus HOM05D004740 ORTHO05D005991 2.1e-65 254.2 294 45.6
PSO339G6109 Papaver somniferum HOM05D004740 ORTHO05D005991 2.7e-65 253.8 292 46.9
Sabra09G0059400 Salix brachista HOM05D004740 ORTHO05D005991 2.7e-65 253.8 294 46.9
CANSAT54G2578 Cannabis sativa HOM05D004740 ORTHO05D005991 3.6e-65 253.4 295 45.1
PSO801G0690 Papaver somniferum HOM05D004740 ORTHO05D005991 3.6e-65 253.4 292 46.9
Sc12g0002010 Simmondsia chinensis HOM05D004740 ORTHO05D005991 6.1e-65 252.7 294 45.9
Zm00001eb013760 Zea mays HOM05D004740 ORTHO05D005991 6.1e-65 252.7 294 45.6
AUR62009675 Chenopodium quinoa HOM05D004740 ORTHO05D005991 8.0e-65 252.3 293 45.4
Cc01_g14810 Coffea canephora HOM05D004740 ORTHO05D005991 8.0e-65 252.3 287 46.3
SEGI_23058 Sequoiadendron giganteum HOM05D004740 ORTHO05D005991 8.0e-65 252.3 294 46.3
AagrBONN_evm.TU.Sc2ySwM_228.2654 Anthoceros agrestis HOM05D004740 ORTHO05D005991 1.0e-64 251.9 300 46.3
Nitab4.5_0001121g0110 Nicotiana tabacum HOM05D004740 ORTHO05D005991 1.0e-64 251.9 294 44.9
ClCG03G000380 Citrullus lanatus HOM05D004740 ORTHO05D005991 2.3e-64 250.8 326 42.9
Nn2g13251 Nelumbo nucifera HOM05D004740 ORTHO05D005991 4.0e-64 250.0 288 46.5
FAN11G1726 Fragaria x ananassa HOM05D004740 ORTHO05D005991 5.2e-64 249.6 317 44.5
FAN16G0900 Fragaria x ananassa HOM05D004740 ORTHO05D005991 5.2e-64 249.6 317 44.5
BcaB01g04122 Brassica carinata HOM05D004740 ORTHO05D005991 2.0e-63 247.7 287 46.0
FAN25G0671 Fragaria x ananassa HOM05D004740 ORTHO05D005991 2.0e-63 247.7 317 44.2
Sed0003355 Sechium edule HOM05D004740 ORTHO05D005991 2.0e-63 247.7 284 46.5
FAN21G3316 Fragaria x ananassa HOM05D004740 ORTHO05D005991 2.6e-63 247.3 317 44.2
FAN21G3649 Fragaria x ananassa HOM05D004740 ORTHO05D005991 2.6e-63 247.3 317 44.2
unitig_60.g25555 Utricularia gibba HOM05D004740 ORTHO05D005991 2.6e-63 247.3 293 44.0
ATR0594G208 Amborella trichopoda HOM05D004740 ORTHO05D005991 3.4e-63 246.9 287 47.0
TPR.G35611 Trifolium pratense HOM05D004740 ORTHO05D005991 3.4e-63 246.9 287 45.6
HanXRQChr01g0012161 Helianthus annuus HOM05D004740 ORTHO05D005991 1.7e-62 244.6 294 45.2
BcaC01g06023 Brassica carinata HOM05D004740 ORTHO05D005991 8.3e-62 242.3 292 44.9
CiPaw.14G054500 Carya illinoinensis HOM05D004740 ORTHO05D005991 2.4e-61 240.7 287 43.9
MBI05_g35601_MAGBIO Magnolia biondii HOM05D004740 ORTHO05D005991 2.4e-61 240.7 294 46.6
CBR_g33923 Chara braunii HOM05D004740 ORTHO05D005991 7.0e-61 239.2 313 44.1
Actinidia32613 Actinidia chinensis HOM05D004740 ORTHO05D005991 2.3e-59 234.2 293 43.7
Lsat_1_v5_gn_5_174621 Lactuca sativa HOM05D004740 ORTHO05D005991 3.0e-56 223.8 321 39.9
C03p19860 Brassica napus HOM05D004740 ORTHO05D005991 1.5e-55 221.5 258 47.3
Atru.chr3.4126 Acer truncatum HOM05D004740 ORTHO05D005991 2.8e-54 217.2 294 41.8
A04p22970 Brassica napus HOM05D004740 ORTHO05D005991 3.7e-54 216.9 255 45.9
SHI19203 Sapria himalayana HOM05D004740 ORTHO05D005991 2.4e-53 214.2 318 39.9
Potri.001G282600 Populus trichocarpa HOM05D004740 ORTHO05D005991 2.9e-46 190.7 249 43.4
arahy.Tifrunner.gnm1.ann1.R7F6LC Arachis hypogaea HOM05D004740 ORTHO05D005991 3.3e-42 177.2 262 40.5
Cpa.g.sc2.364 Carica papaya HOM05D004740 ORTHO05D005991 9.5e-42 175.6 240 43.3
Nn2g10995 Nelumbo nucifera HOM05D004740 ORTHO05D005991 8.0e-41 172.6 255 41.6
Oeu005355.3 Olea europaea HOM05D003290 ORTHO05D005991 4.6e-36 156.8 167 46.7
GSVIVG01024639001 Vitis vinifera HOM05D004740 ORTHO05D005991 1.1e-29 135.6 188 40.4
GSVIVG01024638001 Vitis vinifera HOM05D004740 ORTHO05D005991 7.1e-29 132.9 106 60.4
A03p16880 Brassica napus HOM05D004740 ORTHO05D005991 3.5e-28 130.6 190 38.9
BraA03t10976Z Brassica rapa HOM05D004740 ORTHO05D005991 3.5e-28 130.6 190 38.9
Actinidia23202 Actinidia chinensis HOM05D004740 ORTHO05D005991 4.6e-28 130.2 291 30.9
Oeu025052.1 Olea europaea HOM05D004740 ORTHO05D005991 1.7e-14 85.1 58 62.1
Actinidia02620 Actinidia chinensis HOM05D004740 ORTHO05D005991 2.2e-14 84.7 151 35.8
HPP92_013838 Vanilla planifolia HOM05D004740 ORTHO05D005991 6.4e-14 83.2 58 60.3
Nitab4.5_0006359g0020 Nicotiana tabacum HOM05D004740 ORTHO05D005991 4.6e-12 77.0 178 30.9
COL.COLO4_24546 Corchorus olitorius HOM05D004740 ORTHO05D008255 1.7e-11 75.1 169 32.0
Cfa022152 Carpinus fangiana HOM05D000736 ORTHO05D122253 1.1e-08 65.9 257 27.2
MCO12G393 Micromonas commoda HOM05D018374 ORTHO05D049048 1.1e-08 65.9 65 50.8
PRCOL_00006034 Prasinoderma coloniale HOM05D018374 ORTHO05D049048 5.3e-08 63.5 55 50.9
Nitab4.5_0000644g0120 Nicotiana tabacum HOM05D004740 ORTHO05D005991 6.9e-08 63.2 136 33.8
Cfa025045 Carpinus fangiana HOM05D000736 ORTHO05D123549 9.9e-07 59.3 274 26.6


User provided reference genes

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