Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PRCOL_00000426 Prasinoderma coloniale HOM05D004608 ORTHO05D006533 3.6e-236 821.2 427 100.0
Sopen10g001840 Solanum pennellii HOM05D004608 ORTHO05D006533 2.3e-81 307.0 426 43.0
Solyc10g005890.3 Solanum lycopersicum HOM05D004608 ORTHO05D006533 3.0e-81 306.6 426 43.0
PGSC0003DMG400014406 Solanum tuberosum HOM05D004608 ORTHO05D006533 1.1e-80 304.7 418 43.8
CAN.G492.45 Capsicum annuum HOM05D004608 ORTHO05D006533 1.9e-80 303.9 428 42.3
Os02g0198600 Oryza sativa ssp. japonica HOM05D004608 ORTHO05D006533 4.3e-80 302.8 424 42.9
HanXRQChr05g0160221 Helianthus annuus HOM05D004608 ORTHO05D006533 2.1e-79 300.4 425 40.9
THA.LOC104815684 Tarenaya hassleriana HOM05D004608 ORTHO05D006533 2.8e-79 300.1 427 41.7
Duzib213G0525 Durio zibethinus HOM05D004608 ORTHO05D006533 4.8e-79 299.3 420 42.9
CARHR087890 Cardamine hirsuta HOM05D004608 ORTHO05D006533 6.2e-79 298.9 426 41.5
Pp3c4_20890 Physcomitrium patens HOM05D004608 ORTHO05D006533 6.2e-79 298.9 439 42.1
Oeu026626.2 Olea europaea HOM05D004608 ORTHO05D006533 1.1e-78 298.1 426 42.5
MCO11G772 Micromonas commoda HOM05D004608 ORTHO05D006533 4.0e-78 296.2 421 42.5
HanXRQChr11g0334621 Helianthus annuus HOM05D004608 ORTHO05D006533 6.9e-78 295.4 421 42.0
Lj1C897G12 Lonicera japonica HOM05D004608 ORTHO05D006533 6.9e-78 295.4 428 41.8
Migut.M01599 Erythranthe guttata HOM05D004608 ORTHO05D006533 9.0e-78 295.0 421 42.5
Gohir.A13G130142 Gossypium hirsutum HOM05D004608 ORTHO05D006533 1.5e-77 294.3 422 43.1
Hund22995 Selenicereus undatus HOM05D004608 ORTHO05D006533 2.0e-77 293.9 424 41.7
ATR0587G001 Amborella trichopoda HOM05D004608 ORTHO05D006533 2.6e-77 293.5 402 45.0
ECA236G2785 Erigeron canadensis HOM05D004608 ORTHO05D006533 9.9e-77 291.6 422 41.9
GSVIVG01014786001 Vitis vinifera HOM05D004608 ORTHO05D006533 1.3e-76 291.2 420 41.7
Thhalv10020839m.g Eutrema salsugineum HOM05D004608 ORTHO05D006533 1.7e-76 290.8 424 40.6
EL10Ac4g07509 Beta vulgaris HOM05D004608 ORTHO05D006533 2.2e-76 290.4 422 42.9
Glyma.18G072500 Glycine max HOM05D004608 ORTHO05D006533 2.2e-76 290.4 422 41.5
Potri.011G166100 Populus trichocarpa HOM05D004608 ORTHO05D006533 2.2e-76 290.4 425 41.4
QL08p001615 Quercus lobata HOM05D004608 ORTHO05D006533 2.2e-76 290.4 421 41.3
Ciclev10008478m.g Citrus clementina HOM05D004608 ORTHO05D006533 2.9e-76 290.0 421 41.8
Potri.001G469300 Populus trichocarpa HOM05D004608 ORTHO05D006533 2.9e-76 290.0 425 41.2
SGA_v2.0_scaffold168G38588 Striga asiatica HOM05D004608 ORTHO05D006533 2.9e-76 290.0 420 41.4
COL.COLO4_07760 Corchorus olitorius HOM05D004608 ORTHO05D006533 3.8e-76 289.7 426 41.8
Cfa016939 Carpinus fangiana HOM05D004608 ORTHO05D006533 4.9e-76 289.3 421 41.6
PGR031G2516 Punica granatum HOM05D004608 ORTHO05D006533 4.9e-76 289.3 421 42.3
TWI38G2408 Tripterygium wilfordii HOM05D004608 ORTHO05D006533 4.9e-76 289.3 425 42.4
Cc05_g15480 Coffea canephora HOM05D004608 ORTHO05D006533 6.4e-76 288.9 420 41.9
Sed0022757 Sechium edule HOM05D004608 ORTHO05D006533 6.4e-76 288.9 429 41.5
AL3G25090 Arabidopsis lyrata HOM05D004608 ORTHO05D006533 8.4e-76 288.5 427 40.7
Gohir.D13G133200 Gossypium hirsutum HOM05D004608 ORTHO05D006533 8.4e-76 288.5 420 41.9
Lsat_1_v5_gn_7_116460 Lactuca sativa HOM05D004608 ORTHO05D006533 8.4e-76 288.5 420 40.2
MSTRG.7029 Avicennia marina HOM05D004608 ORTHO05D006533 1.1e-75 288.1 421 42.8
vmacro11628 Vaccinium macrocarpon HOM05D004608 ORTHO05D006533 1.1e-75 288.1 423 41.6
CSS0047803 Camellia sinensis var. sinensis HOM05D004608 ORTHO05D006533 1.4e-75 287.7 425 41.4
Sp3g11470 Schrenkiella parvula HOM05D004608 ORTHO05D006533 1.4e-75 287.7 424 40.6
Glyma.08G337500 Glycine max HOM05D004608 ORTHO05D006533 1.9e-75 287.3 422 41.5
Ca_14850_v3 Cicer arietinum L. HOM05D004608 ORTHO05D006533 4.2e-75 286.2 422 41.5
Phvul.006G060300 Phaseolus vulgaris HOM05D004608 ORTHO05D006533 4.2e-75 286.2 420 41.2
TPR.G17932 Trifolium pratense HOM05D004608 ORTHO05D006533 4.2e-75 286.2 424 42.5
AT3G13235 Arabidopsis thaliana HOM05D004608 ORTHO05D006533 5.4e-75 285.8 424 39.9
C01p51800 Brassica napus HOM05D004608 ORTHO05D006533 5.4e-75 285.8 421 41.8
Cpa.g.sc12.91 Carica papaya HOM05D004608 ORTHO05D006533 5.4e-75 285.8 422 41.5
TWI38G1265 Tripterygium wilfordii HOM05D004608 ORTHO05D006533 5.4e-75 285.8 424 41.7
Actinidia30368 Actinidia chinensis HOM05D004608 ORTHO05D006533 7.1e-75 285.4 424 41.3
Sabra16G0318300 Salix brachista HOM05D004608 ORTHO05D006533 7.1e-75 285.4 421 41.1
PSO541G2325 Papaver somniferum HOM05D004608 ORTHO05D006533 1.2e-74 284.6 421 41.8
FvH4_3g42010 Fragaria vesca HOM05D004608 ORTHO05D006533 1.6e-74 284.3 428 40.7
Rhsim06G0233900 Rhododendron simsii HOM05D004608 ORTHO05D006533 1.6e-74 284.3 421 42.3
DCAR_017596 Daucus carota HOM05D004608 ORTHO05D006533 2.1e-74 283.9 419 41.8
VMungo0540G0162 Vigna mungo HOM05D004608 ORTHO05D006533 6.0e-74 282.3 423 41.4
CsaV3_7G021370 Cucumis sativus L. HOM05D004608 ORTHO05D006533 7.9e-74 282.0 424 41.7
CiPaw.12G141700 Carya illinoinensis HOM05D004608 ORTHO05D006533 1.0e-73 281.6 427 40.3
Gorai.013G149500 Gossypium raimondii HOM05D004608 ORTHO05D006533 1.0e-73 281.6 428 41.1
BraA03t12964Z Brassica rapa HOM05D004608 ORTHO05D006533 1.3e-73 281.2 421 41.8
MD03G1039600 Malus domestica HOM05D004608 ORTHO05D006533 1.3e-73 281.2 420 41.4
Nn1g07694 Nelumbo nucifera HOM05D004608 ORTHO05D006533 1.3e-73 281.2 420 40.5
Sed0006020 Sechium edule HOM05D004608 ORTHO05D006533 1.3e-73 281.2 420 41.7
Eucgr.F03661 Eucalyptus grandis HOM05D004608 ORTHO05D006533 1.8e-73 280.8 423 40.9
A03p38110 Brassica napus HOM05D004608 ORTHO05D006533 2.3e-73 280.4 421 41.8
C03p46240 Brassica napus HOM05D004608 ORTHO05D006533 2.3e-73 280.4 434 40.6
Prupe.6G031700 Prunus persica HOM05D004608 ORTHO05D006533 2.3e-73 280.4 422 41.5
CSS0013715 Camellia sinensis var. sinensis HOM05D004608 ORTHO05D006533 3.0e-73 280.0 420 41.2
Gorai.009G453300 Gossypium raimondii HOM05D004608 ORTHO05D006533 3.0e-73 280.0 420 40.7
ClCG09G021670 Citrullus lanatus HOM05D004608 ORTHO05D006533 3.9e-73 279.6 442 40.5
Gohir.D05G386600 Gossypium hirsutum HOM05D004608 ORTHO05D006533 3.9e-73 279.6 420 40.7
Zm00001eb205890 Zea mays HOM05D004608 ORTHO05D006533 3.9e-73 279.6 372 43.8
Atru.chr2.3848 Acer truncatum HOM05D004608 ORTHO05D006533 5.1e-73 279.3 424 40.1
Gohir.A04G003100 Gossypium hirsutum HOM05D004608 ORTHO05D006533 5.1e-73 279.3 421 40.4
RcHm_v2.0_Chr5g0075221 Rosa chinensis HOM05D004608 ORTHO05D006533 5.1e-73 279.3 420 40.0
AagrBONN_evm.TU.Sc2ySwM_117.3155 Anthoceros agrestis HOM05D004608 ORTHO05D006533 8.7e-73 278.5 430 39.1
Thecc.07G005400 Theobroma cacao HOM05D004608 ORTHO05D006533 8.7e-73 278.5 420 40.7
MBI14_g00953_MAGBIO Magnolia biondii HOM05D004608 ORTHO05D006533 1.1e-72 278.1 424 41.0
Aa31LG8G500 Aethionema arabicum HOM05D004608 ORTHO05D006533 1.9e-72 277.3 436 39.7
Lj6g0013957 Lotus japonicus HOM05D004608 ORTHO05D006533 3.3e-72 276.6 423 41.1
arahy.Tifrunner.gnm1.ann1.R4UTE8 Arachis hypogaea HOM05D004608 ORTHO05D006533 4.3e-72 276.2 421 40.6
BolC3t16895H Brassica oleracea HOM05D004608 ORTHO05D006533 4.3e-72 276.2 431 39.7
CANSAT11G0422 Cannabis sativa HOM05D004608 ORTHO05D006533 4.3e-72 276.2 420 40.0
HPP92_021912 Vanilla planifolia HOM05D004608 ORTHO05D006533 4.3e-72 276.2 427 41.2
Aqoxy4G02317 Aquilegia oxysepala HOM05D004608 ORTHO05D006533 5.6e-72 275.8 424 39.9
A01p40280 Brassica napus HOM05D004608 ORTHO05D006533 5.6e-72 275.8 422 41.2
MD11G1040100 Malus domestica HOM05D004608 ORTHO05D006533 5.6e-72 275.8 422 40.8
FAN16G3187 Fragaria x ananassa HOM05D004608 ORTHO05D006533 7.4e-72 275.4 439 39.6
AUR62017165 Chenopodium quinoa HOM05D004608 ORTHO05D006533 9.6e-72 275.0 417 41.5
arahy.Tifrunner.gnm1.ann1.EI2AUC Arachis hypogaea HOM05D004608 ORTHO05D006533 1.3e-71 274.6 431 39.4
BraA01t04064Z Brassica rapa HOM05D004608 ORTHO05D006533 1.6e-71 274.2 422 41.5
Mapoly0030s0110 Marchantia polymorpha HOM05D004608 ORTHO05D006533 1.6e-71 274.2 332 44.6
FAN25G0703 Fragaria x ananassa HOM05D004608 ORTHO05D006533 2.8e-71 273.5 440 39.5
MELO3C013214.2 Cucumis melo HOM05D004608 ORTHO05D006533 6.2e-71 272.3 424 41.0
Lalb_Chr15g0082461 Lupinus albus HOM05D004608 ORTHO05D006533 6.2e-71 272.3 423 41.1
FAN11G3108 Fragaria x ananassa HOM05D004608 ORTHO05D006533 8.1e-71 271.9 459 38.3
Carub.0003s1265 Capsella rubella HOM05D004608 ORTHO05D006533 2.4e-70 270.4 425 39.3
FAN21G2140 Fragaria x ananassa HOM05D004608 ORTHO05D006533 4.0e-70 269.6 459 38.1
Manes.05G206400 Manihot esculenta HOM05D004608 ORTHO05D006533 5.3e-70 269.2 333 43.5
Nitab4.5_0007214g0010 Nicotiana tabacum HOM05D004608 ORTHO05D006533 5.3e-70 269.2 424 40.6
AUR62035639 Chenopodium quinoa HOM05D004608 ORTHO05D006533 4.5e-69 266.2 416 40.1
Haze_09894 Corylus avellana HOM05D004608 ORTHO05D006533 7.6e-69 265.4 431 38.7
Dinv40894 Davidia involucrata HOM05D004608 ORTHO05D006533 1.7e-68 264.2 370 41.4
Psat5g164640 Pisum sativum HOM05D004608 ORTHO05D006533 2.9e-68 263.5 334 43.7
THA.LOC104801910 Tarenaya hassleriana HOM05D004608 ORTHO05D006533 2.9e-68 263.5 390 39.5
THA.LOC104810298 Tarenaya hassleriana HOM05D004608 ORTHO05D006533 2.9e-68 263.5 390 39.5
Sabra11G0139800 Salix brachista HOM05D004608 ORTHO05D006533 3.8e-68 263.1 464 37.7
Peaxi162Scf00219g00158 Petunia axillaris HOM05D004608 ORTHO05D006533 1.6e-66 257.7 423 39.7
TAR626G0684 Trochodendron aralioides HOM05D004608 ORTHO05D006533 7.9e-66 255.4 326 41.7
TAR624G0837 Trochodendron aralioides HOM05D004608 ORTHO05D006533 1.2e-61 241.5 420 37.9
BolC1t05127H Brassica oleracea HOM05D004608 ORTHO05D006533 8.4e-60 235.3 430 37.4
Duzib268G0270 Durio zibethinus HOM05D004608 ORTHO05D006533 1.4e-59 234.6 302 46.4
Nitab4.5_0001622g0040 Nicotiana tabacum HOM05D004608 ORTHO05D006533 2.7e-58 230.3 366 40.2
Hma1.2p1_0193F.1_g084100 Hydrangea macrophylla HOM05D004608 ORTHO05D006533 3.9e-57 226.5 486 34.4
Hma1.2p1_2995F.1_g331425 Hydrangea macrophylla HOM05D004608 ORTHO05D006533 3.9e-57 226.5 486 34.4
CBR_g36902 Chara braunii HOM05D004608 ORTHO05D006533 5.1e-57 226.1 314 43.3
Cre10.g447300 Chlamydomonas reinhardtii HOM05D004608 ORTHO05D006533 2.2e-52 210.7 474 33.5
Oeu019694.2 Olea europaea HOM05D004608 ORTHO05D006533 1.0e-49 201.8 439 33.5
Sc03g0011700 Simmondsia chinensis HOM05D004608 ORTHO05D006533 1.1e-48 198.4 273 39.9
Ah.06g180960 Amaranthus hybridus HOM05D004608 ORTHO05D006533 1.1e-46 191.8 334 38.3
Oeu019695.1 Olea europaea HOM05D004608 ORTHO05D006533 9.1e-46 188.7 424 33.0
Cfa022177 Carpinus fangiana HOM05D004608 ORTHO05D006533 1.7e-44 184.5 354 36.2
Actinidia10581 Actinidia chinensis HOM05D004608 ORTHO05D006533 3.0e-41 173.7 364 35.4
unitig_899.g15266 Utricularia gibba HOM05D004608 ORTHO05D006533 1.1e-40 171.8 328 36.3
CDE05G0237 Ceratophyllum demersum HOM05D004608 ORTHO05D006533 1.3e-36 158.3 201 44.3
Pp3c17_4800 Physcomitrium patens HOM05D004608 ORTHO05D006533 7.2e-35 152.5 470 28.7
CDE05G1663 Ceratophyllum demersum HOM05D004608 ORTHO05D006533 5.9e-29 132.9 113 55.8
unitig_699.g19599 Utricularia gibba HOM05D004608 ORTHO05D006533 1.3e-28 131.7 150 38.7
QL09p009005 Quercus lobata HOM05D000176 ORTHO05D000106 1.9e-19 101.3 122 39.3
CSS0026438 Camellia sinensis var. sinensis HOM05D004608 ORTHO05D006533 5.5e-19 99.8 111 46.8
Aa31LG10G450 Aethionema arabicum HOM05D004608 ORTHO05D006533 7.2e-19 99.4 327 25.4
Aa31LG10G470 Aethionema arabicum HOM05D004608 ORTHO05D006533 9.4e-19 99.0 182 36.8
CSS0036658 Camellia sinensis var. sinensis HOM05D004608 ORTHO05D006533 9.4e-19 99.0 110 46.4
AL5G25300 Arabidopsis lyrata HOM05D004608 ORTHO05D038587 7.0e-14 82.8 181 33.7
CSS0047513 Camellia sinensis var. sinensis HOM05D004608 ORTHO05D006533 6.1e-10 69.7 58 53.4
MD12G1084200 Malus domestica HOM05D004608 ORTHO05D249232 6.1e-10 69.7 57 57.9
AL3G34310 Arabidopsis lyrata HOM05D004608 ORTHO05D038587 1.8e-09 68.2 58 46.6
Ah.06g180950 Amaranthus hybridus HOM05D004608 ORTHO05D006533 5.7e-08 63.2 138 30.4
QL05p082689 Quercus lobata HOM05D004608 ORTHO05D006533 5.4e-06 56.6 86 31.4
A05p36340 Brassica napus HOM05D004608 ORTHO05D006533 7.0e-06 56.2 71 42.3


User provided reference genes

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