Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PRCOL_00000393 Prasinoderma coloniale HOM05D005495 ORTHO05D006878 2.0e-68 262.3 132 100.0
Cre01.g052100 Chlamydomonas reinhardtii HOM05D005495 ORTHO05D006878 4.7e-25 118.2 127 51.2
CDE02G3134 Ceratophyllum demersum HOM05D005495 ORTHO05D006878 1.8e-21 106.3 133 44.4
CDE11G0957 Ceratophyllum demersum HOM05D005495 ORTHO05D006878 9.1e-21 104.0 133 43.6
Thhalv10011822m.g Eutrema salsugineum HOM05D005495 ORTHO05D006878 9.1e-21 104.0 122 45.1
Sp1g35300 Schrenkiella parvula HOM05D005495 ORTHO05D006878 9.1e-21 104.0 124 45.2
AagrBONN_evm.TU.Sc2ySwM_368.2340 Anthoceros agrestis HOM05D005495 ORTHO05D006878 1.2e-20 103.6 120 48.3
AL1G54950 Arabidopsis lyrata HOM05D005495 ORTHO05D006878 1.2e-20 103.6 124 45.2
AT1G48350 Arabidopsis thaliana HOM05D005495 ORTHO05D006878 1.2e-20 103.6 124 45.2
BcaC07g37142 Brassica carinata HOM05D005495 ORTHO05D006878 1.2e-20 103.6 124 45.2
A08p04780 Brassica napus HOM05D005495 ORTHO05D006878 1.2e-20 103.6 124 45.2
C08p05150 Brassica napus HOM05D005495 ORTHO05D006878 1.2e-20 103.6 124 45.2
BolC8t47325H Brassica oleracea HOM05D005495 ORTHO05D006878 1.2e-20 103.6 124 45.2
BraA08t32508Z Brassica rapa HOM05D005495 ORTHO05D006878 1.2e-20 103.6 124 45.2
Carub.0001s3747 Capsella rubella HOM05D005495 ORTHO05D006878 1.2e-20 103.6 122 45.1
Potri.010G005000 Populus trichocarpa HOM05D005495 ORTHO05D006878 1.2e-20 103.6 124 44.4
CARHR037960 Cardamine hirsuta HOM05D005495 ORTHO05D006878 1.5e-20 103.2 124 45.2
PSO170G2754 Papaver somniferum HOM05D005495 ORTHO05D006878 1.5e-20 103.2 124 48.4
Zm00001eb063340 Zea mays HOM05D005495 ORTHO05D006878 1.5e-20 103.2 129 46.5
BcaB04g17437 Brassica carinata HOM05D005495 ORTHO05D006878 2.0e-20 102.8 124 44.4
ClCG05G007000 Citrullus lanatus HOM05D005495 ORTHO05D006878 2.0e-20 102.8 124 46.8
MELO3C006766.2 Cucumis melo HOM05D005495 ORTHO05D006878 2.0e-20 102.8 124 46.8
Manes.01G048400 Manihot esculenta HOM05D005495 ORTHO05D006878 2.0e-20 102.8 126 44.4
Aa31LG10G5410 Aethionema arabicum HOM05D005495 ORTHO05D006878 2.6e-20 102.4 124 46.0
Aqoxy5G02875 Aquilegia oxysepala HOM05D005495 ORTHO05D006878 2.6e-20 102.4 119 46.2
PSO357G0664 Papaver somniferum HOM05D005495 ORTHO05D006878 2.6e-20 102.4 131 45.0
Sed0019465 Sechium edule HOM05D005495 ORTHO05D006878 2.6e-20 102.4 124 46.0
SMO347G0648 Selaginella moellendorffii HOM05D005495 ORTHO05D006878 2.6e-20 102.4 108 47.2
Cc04_g13640 Coffea canephora HOM05D005495 ORTHO05D006878 4.5e-20 101.7 117 46.2
Sabra10G0004200 Salix brachista HOM05D005495 ORTHO05D006878 4.5e-20 101.7 124 43.5
Sc25g0002370 Simmondsia chinensis HOM05D005495 ORTHO05D006878 4.5e-20 101.7 118 44.9
CAN.G484.95 Capsicum annuum HOM05D005495 ORTHO05D006878 5.9e-20 101.3 124 45.2
ATR0561G067 Amborella trichopoda HOM05D005495 ORTHO05D006878 7.7e-20 100.9 124 43.5
CsaV3_3G015690 Cucumis sativus L. HOM05D005495 ORTHO05D006878 7.7e-20 100.9 124 45.2
Dinv26490 Davidia involucrata HOM05D005495 ORTHO05D006878 7.7e-20 100.9 124 44.4
MCO16G312 Micromonas commoda HOM05D005495 ORTHO05D006878 7.7e-20 100.9 127 43.3
Sed0015702 Sechium edule HOM05D005495 ORTHO05D006878 7.7e-20 100.9 124 45.2
SGA_v2.0_scaffold5G02973 Striga asiatica HOM05D005495 ORTHO05D006878 7.7e-20 100.9 130 42.3
GSVIVG01017720001 Vitis vinifera HOM05D005495 ORTHO05D006878 1.0e-19 100.5 124 46.0
Solyc12g098890.2 Solanum lycopersicum HOM05D005495 ORTHO05D006878 1.3e-19 100.1 130 43.8
Sopen12g033640 Solanum pennellii HOM05D005495 ORTHO05D006878 1.3e-19 100.1 130 43.8
PGSC0003DMG400004682 Solanum tuberosum HOM05D005495 ORTHO05D006878 1.3e-19 100.1 130 43.8
CANSAT01G2767 Cannabis sativa HOM05D005495 ORTHO05D006878 1.7e-19 99.8 125 43.2
CBR_g48702 Chara braunii HOM05D005495 ORTHO05D006878 1.7e-19 99.8 112 47.3
MBI18_g28932_MAGBIO Magnolia biondii HOM05D005495 ORTHO05D006878 1.7e-19 99.8 124 43.5
Nn1g08285 Nelumbo nucifera HOM05D005495 ORTHO05D006878 1.7e-19 99.8 136 41.2
SEGI_23609 Sequoiadendron giganteum HOM05D005495 ORTHO05D006878 1.7e-19 99.8 121 45.5
Eucgr.L01079 Eucalyptus grandis HOM05D005495 ORTHO05D006878 2.2e-19 99.4 124 43.5
THA.LOC104821817 Tarenaya hassleriana HOM05D005495 ORTHO05D006878 2.2e-19 99.4 124 42.7
TPR.G18013 Trifolium pratense HOM05D005495 ORTHO05D006878 2.2e-19 99.4 129 44.2
unitig_22.g5836 Utricularia gibba HOM05D005495 ORTHO05D006878 2.2e-19 99.4 109 47.7
Atru.chr4.3197 Acer truncatum HOM05D005495 ORTHO05D006878 2.9e-19 99.0 135 44.4
FAN17G0375 Fragaria x ananassa HOM05D005495 ORTHO05D006878 2.9e-19 99.0 124 42.7
Nitab4.5_0003998g0040 Nicotiana tabacum HOM05D005495 ORTHO05D006878 2.9e-19 99.0 134 42.5
Pp3c7_24650 Physcomitrium patens HOM05D005495 ORTHO05D006878 2.9e-19 99.0 121 44.6
Prupe.1G209300 Prunus persica HOM05D005495 ORTHO05D006878 2.9e-19 99.0 124 44.4
EL10Ac3g06214 Beta vulgaris HOM05D005495 ORTHO05D006878 3.8e-19 98.6 124 43.5
DCAR_026923 Daucus carota HOM05D005495 ORTHO05D006878 3.8e-19 98.6 126 43.7
Gohir.A08G081800 Gossypium hirsutum HOM05D005495 ORTHO05D006878 3.8e-19 98.6 124 42.7
Gorai.004G096600 Gossypium raimondii HOM05D005495 ORTHO05D006878 3.8e-19 98.6 124 42.7
HanXRQChr16g0513961 Helianthus annuus HOM05D005495 ORTHO05D006878 3.8e-19 98.6 118 42.4
Lalb_Chr11g0073801 Lupinus albus HOM05D005495 ORTHO05D006878 3.8e-19 98.6 130 43.1
Psat1g016560 Pisum sativum HOM05D005495 ORTHO05D006878 3.8e-19 98.6 124 43.5
Actinidia35901 Actinidia chinensis HOM05D005495 ORTHO05D006878 5.0e-19 98.2 133 40.6
Ah.13g073090 Amaranthus hybridus HOM05D005495 ORTHO05D006878 5.0e-19 98.2 124 42.7
Ciclev10022561m.g Citrus clementina HOM05D005495 ORTHO05D006878 5.0e-19 98.2 121 45.5
ECA234G1716 Erigeron canadensis HOM05D005495 ORTHO05D006878 5.0e-19 98.2 131 42.0
Gohir.D08G091100 Gossypium hirsutum HOM05D005495 ORTHO05D006878 5.0e-19 98.2 124 42.7
Peaxi162Scf00323g00929 Petunia axillaris HOM05D005495 ORTHO05D006878 5.0e-19 98.2 126 44.4
vmacro00585 Vaccinium macrocarpon HOM05D005495 ORTHO05D006878 5.0e-19 98.2 133 42.9
Actinidia33011 Actinidia chinensis HOM05D005495 ORTHO05D006878 6.5e-19 97.8 133 40.6
CSS0010244 Camellia sinensis var. sinensis HOM05D005495 ORTHO05D006878 6.5e-19 97.8 124 44.4
COL.COLO4_35587 Corchorus olitorius HOM05D005495 ORTHO05D006878 6.5e-19 97.8 124 43.5
FAN07G0874 Fragaria x ananassa HOM05D005495 ORTHO05D006878 6.5e-19 97.8 124 42.7
Lalb_Chr08g0232951 Lupinus albus HOM05D005495 ORTHO05D006878 6.5e-19 97.8 130 42.3
MD13G1136100 Malus domestica HOM05D005495 ORTHO05D006878 6.5e-19 97.8 124 41.9
Pp3c11_5070 Physcomitrium patens HOM05D005495 ORTHO05D006878 6.5e-19 97.8 121 44.6
Thecc.09G200200 Theobroma cacao HOM05D005495 ORTHO05D006878 6.5e-19 97.8 129 41.9
Cfa015763 Carpinus fangiana HOM05D005495 ORTHO05D006878 8.5e-19 97.4 124 41.9
CiPaw.02G068300 Carya illinoinensis HOM05D005495 ORTHO05D006878 8.5e-19 97.4 124 42.7
Nitab4.5_0000978g0010 Nicotiana tabacum HOM05D005495 ORTHO05D006878 8.5e-19 97.4 124 43.5
RcHm_v2.0_Chr4g0428131 Rosa chinensis HOM05D005495 ORTHO05D006878 8.5e-19 97.4 124 42.7
FvH4_4g21870 Fragaria vesca HOM05D005495 ORTHO05D006878 1.1e-18 97.1 124 42.7
Lsat_1_v5_gn_5_109481 Lactuca sativa HOM05D005495 ORTHO05D006878 1.1e-18 97.1 118 43.2
Medtr2g044920 Medicago truncatula HOM05D005495 ORTHO05D006878 1.1e-18 97.1 129 44.2
QL06p014840 Quercus lobata HOM05D005495 ORTHO05D006878 1.1e-18 97.1 123 42.3
HPP92_026860 Vanilla planifolia HOM05D005495 ORTHO05D006878 1.1e-18 97.1 124 40.3
MSTRG.28074 Avicennia marina HOM05D005495 ORTHO05D006878 1.4e-18 96.7 118 42.4
Ca_02315_v3 Cicer arietinum L. HOM05D005495 ORTHO05D006878 1.4e-18 96.7 124 45.2
Lj6g0020934 Lotus japonicus HOM05D005495 ORTHO05D006878 1.4e-18 96.7 118 44.9
Eucgr.B02183 Eucalyptus grandis HOM05D005495 ORTHO05D006878 1.9e-18 96.3 124 42.7
FAN12G1024 Fragaria x ananassa HOM05D005495 ORTHO05D006878 1.9e-18 96.3 124 42.7
MD16G1131500 Malus domestica HOM05D005495 ORTHO05D006878 1.9e-18 96.3 124 41.9
Nn5g29782 Nelumbo nucifera HOM05D005495 ORTHO05D006878 1.9e-18 96.3 136 41.2
TAR362G1223 Trochodendron aralioides HOM05D005495 ORTHO05D006878 1.9e-18 96.3 118 44.1
HanXRQChr10g0290461 Helianthus annuus HOM05D005495 ORTHO05D006878 2.5e-18 95.9 124 39.5
arahy.Tifrunner.gnm1.ann1.7J6TQU Arachis hypogaea HOM05D005495 ORTHO05D006878 4.2e-18 95.1 124 42.7
Phvul.009G221700 Phaseolus vulgaris HOM05D005495 ORTHO05D006878 4.2e-18 95.1 124 42.7
Rhsim09G0032900 Rhododendron simsii HOM05D005495 ORTHO05D006878 4.2e-18 95.1 124 44.4
Hund12271 Selenicereus undatus HOM05D005495 ORTHO05D006878 4.2e-18 95.1 124 41.9
Hund12272 Selenicereus undatus HOM05D005495 ORTHO05D006878 4.2e-18 95.1 124 41.9
VMungo1309G3094 Vigna mungo HOM05D005495 ORTHO05D006878 4.2e-18 95.1 124 41.9
AUR62023677 Chenopodium quinoa HOM05D005495 ORTHO05D006878 5.5e-18 94.7 124 42.7
arahy.Tifrunner.gnm1.ann1.47CT68 Arachis hypogaea HOM05D005495 ORTHO05D006878 7.2e-18 94.4 124 42.7
arahy.Tifrunner.gnm1.ann1.C7LR0V Arachis hypogaea HOM05D005495 ORTHO05D006878 7.2e-18 94.4 124 42.7
CSS0009878 Camellia sinensis var. sinensis HOM05D005495 ORTHO05D006878 7.2e-18 94.4 102 46.1
Mapoly0060s0071 Marchantia polymorpha HOM05D005495 ORTHO05D006878 7.2e-18 94.4 112 47.3
Duzib251G0959 Durio zibethinus HOM05D005495 ORTHO05D006878 9.4e-18 94.0 124 44.4
Glyma.09G077600 Glycine max HOM05D005495 ORTHO05D006878 9.4e-18 94.0 124 41.9
Glyma.15G185000 Glycine max HOM05D005495 ORTHO05D006878 9.4e-18 94.0 124 41.9
arahy.Tifrunner.gnm1.ann1.9LP875 Arachis hypogaea HOM05D005495 ORTHO05D006878 1.2e-17 93.6 122 42.6
PGR004G2778 Punica granatum HOM05D005495 ORTHO05D006878 1.2e-17 93.6 124 41.1
CSS0024695 Camellia sinensis var. sinensis HOM05D005495 ORTHO05D006878 2.1e-17 92.8 106 45.3
SEGI_13687 Sequoiadendron giganteum HOM05D005495 ORTHO05D006878 2.1e-17 92.8 121 43.8
Duzib177G0638 Durio zibethinus HOM05D005495 ORTHO05D006878 2.7e-17 92.4 112 43.8
Pp3c1_8470 Physcomitrium patens HOM05D005495 ORTHO05D006878 3.6e-17 92.0 121 43.0
arahy.Tifrunner.gnm1.ann1.U7ILUP Arachis hypogaea HOM05D005495 ORTHO05D006878 6.1e-17 91.3 104 46.2
Haze_00740 Corylus avellana HOM05D005495 ORTHO05D006878 8.0e-17 90.9 107 43.0
Pp3c1_1240 Physcomitrium patens HOM05D005495 ORTHO05D006878 2.3e-16 89.4 120 40.8
Actinidia04610 Actinidia chinensis HOM05D005495 ORTHO05D006878 5.2e-16 88.2 99 43.4
Lj3A842T60 Lonicera japonica HOM05D005495 ORTHO05D006878 5.2e-16 88.2 105 42.9
Haze_27388 Corylus avellana HOM05D005495 ORTHO05D006878 6.7e-16 87.8 94 52.1
Nn2g14382 Nelumbo nucifera HOM05D005495 ORTHO05D006878 2.0e-15 86.3 138 39.1
TAR633G1063 Trochodendron aralioides HOM05D005495 ORTHO05D006878 1.2e-12 77.0 120 39.2
Nn1g06332 Nelumbo nucifera HOM05D005495 ORTHO05D006878 1.0e-11 73.9 89 40.4
Oeu063165.1 Olea europaea HOM05D005495 ORTHO05D006878 8.8e-08 60.8 73 42.5
Oeu063167.2 Olea europaea HOM05D005495 ORTHO05D006878 8.8e-08 60.8 73 42.5
Solyc05g007910.3 Solanum lycopersicum HOM05D005738 ORTHO05D007135 5.7e-07 58.2 123 30.9
Sopen05g003760 Solanum pennellii HOM05D005738 ORTHO05D007135 7.5e-07 57.8 123 30.9
Nn3g20978 Nelumbo nucifera HOM05D005495 ORTHO05D006878 9.7e-07 57.4 84 38.1
AUR62002518 Chenopodium quinoa HOM05D005495 ORTHO05D006878 1.3e-06 57.0 50 52.0
MCO01G553 Micromonas commoda HOM05D004009 ORTHO05D004617 1.7e-06 56.6 96 34.4
CAN.G1604.4 Capsicum annuum HOM05D005738 ORTHO05D007135 6.3e-06 54.7 99 34.3
Cpa.g.sc146.3 Carica papaya HOM05D005495 ORTHO05D006878 8.2e-06 54.3 120 30.0


User provided reference genes

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