Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PRCOL_00000238 Prasinoderma coloniale HOM05D006147 ORTHO05D007501 3.8e-137 491.5 245 100.0
Peaxi162Scf00684g00123 Petunia axillaris HOM05D006147 ORTHO05D007501 3.0e-78 295.8 241 60.6
AT2G21280 Arabidopsis thaliana HOM05D006147 ORTHO05D007501 6.7e-78 294.7 243 60.1
THA.LOC104804110 Tarenaya hassleriana HOM05D006147 ORTHO05D007501 1.5e-77 293.5 245 58.8
EL10Ac9g21633 Beta vulgaris HOM05D006147 ORTHO05D007501 2.0e-77 293.1 241 59.8
CSS0016386 Camellia sinensis var. sinensis HOM05D006147 ORTHO05D007501 2.0e-77 293.1 241 60.2
ECA233G5423 Erigeron canadensis HOM05D006147 ORTHO05D001140 2.0e-77 293.1 246 59.8
Sed0012779 Sechium edule HOM05D006147 ORTHO05D007501 3.3e-77 292.4 241 61.0
AL4G10420 Arabidopsis lyrata HOM05D006147 ORTHO05D007501 4.4e-77 292.0 243 59.7
Manes.04G083100 Manihot esculenta HOM05D006147 ORTHO05D007501 7.4e-77 291.2 241 58.9
QL11p046465 Quercus lobata HOM05D006147 ORTHO05D007501 7.4e-77 291.2 241 60.2
CSS0033675 Camellia sinensis var. sinensis HOM05D006147 ORTHO05D007501 9.7e-77 290.8 241 59.3
CAN.G1635.6 Capsicum annuum HOM05D006147 ORTHO05D007501 9.7e-77 290.8 239 59.4
DCAR_003686 Daucus carota HOM05D006147 ORTHO05D007501 9.7e-77 290.8 241 59.8
TAR628G0064 Trochodendron aralioides HOM05D006147 ORTHO05D007501 9.7e-77 290.8 241 60.2
Aa31LG7G15210 Aethionema arabicum HOM05D006147 ORTHO05D007501 1.7e-76 290.0 243 58.8
CARHR112150 Cardamine hirsuta HOM05D006147 ORTHO05D007501 1.7e-76 290.0 243 58.4
Cpa.g.sc150.15 Carica papaya HOM05D006147 ORTHO05D007501 2.8e-76 289.3 241 58.9
RcHm_v2.0_Chr6g0267981 Rosa chinensis HOM05D006147 ORTHO05D007501 3.7e-76 288.9 241 58.9
Pp3c7_11090 Physcomitrium patens HOM05D006147 ORTHO05D007501 4.8e-76 288.5 241 59.3
Pp3c7_11100 Physcomitrium patens HOM05D006147 ORTHO05D007501 4.8e-76 288.5 241 59.3
GSVIVG01024169001 Vitis vinifera HOM05D006147 ORTHO05D007501 4.8e-76 288.5 241 59.8
MD10G1062800 Malus domestica HOM05D006147 ORTHO05D007501 6.3e-76 288.1 241 58.9
Medtr4g072040 Medicago truncatula HOM05D006147 ORTHO05D007501 6.3e-76 288.1 241 58.5
Prupe.8G083600 Prunus persica HOM05D006147 ORTHO05D007501 6.3e-76 288.1 241 58.9
PGSC0003DMG402031287 Solanum tuberosum HOM05D006147 ORTHO05D007501 6.3e-76 288.1 241 58.9
Sopen09g034870 Solanum pennellii HOM05D006147 ORTHO05D007501 8.2e-76 287.7 241 58.5
A04p16060 Brassica napus HOM05D006147 ORTHO05D007501 1.1e-75 287.3 243 58.8
C04p50520 Brassica napus HOM05D006147 ORTHO05D007501 1.1e-75 287.3 243 58.8
CiPaw.05G073500 Carya illinoinensis HOM05D006147 ORTHO05D007501 1.1e-75 287.3 241 59.8
Actinidia02248 Actinidia chinensis HOM05D006147 ORTHO05D007501 1.4e-75 287.0 241 59.3
Aqoxy6G02357 Aquilegia oxysepala HOM05D006147 ORTHO05D007501 1.4e-75 287.0 241 59.3
Carub.0004s0032 Capsella rubella HOM05D006147 ORTHO05D007501 1.4e-75 287.0 243 58.0
Cre05.g233305 Chlamydomonas reinhardtii HOM05D006147 ORTHO05D007501 1.4e-75 287.0 239 59.8
Ca_20936_v3 Cicer arietinum L. HOM05D006147 ORTHO05D007501 1.4e-75 287.0 241 58.1
COL.COLO4_26048 Corchorus olitorius HOM05D006147 ORTHO05D007501 1.4e-75 287.0 241 58.5
Glyma.12G036900 Glycine max HOM05D006147 ORTHO05D007501 1.4e-75 287.0 241 58.1
Lalb_Chr03g0025341 Lupinus albus HOM05D006147 ORTHO05D007501 1.4e-75 287.0 241 58.5
PSO210G6769 Papaver somniferum HOM05D006147 ORTHO05D007501 1.4e-75 287.0 241 57.7
Potri.009G124800 Populus trichocarpa HOM05D006147 ORTHO05D007501 1.4e-75 287.0 241 58.1
Sabra09G0095800 Salix brachista HOM05D006147 ORTHO05D007501 1.4e-75 287.0 241 57.7
SalBow3G3875 Salvia bowleyana HOM05D006147 ORTHO05D007501 1.4e-75 287.0 241 59.8
AUR62016834 Chenopodium quinoa HOM05D006147 ORTHO05D007501 1.8e-75 286.6 241 59.3
Glyma.11G110000 Glycine max HOM05D006147 ORTHO05D007501 1.8e-75 286.6 241 58.5
Migut.N01278 Erythranthe guttata HOM05D006147 ORTHO05D007501 2.4e-75 286.2 241 59.3
Eucgr.G01732 Eucalyptus grandis HOM05D006147 ORTHO05D007501 2.4e-75 286.2 236 60.2
CsaV3_7G000410 Cucumis sativus L. HOM05D006147 ORTHO05D007501 3.1e-75 285.8 241 58.5
Solyc09g091970.4 Solanum lycopersicum HOM05D006147 ORTHO05D007501 3.1e-75 285.8 241 58.5
Thecc.02G074800 Theobroma cacao HOM05D006147 ORTHO05D007501 3.1e-75 285.8 245 57.6
TPR.G28159 Trifolium pratense HOM05D006147 ORTHO05D007501 3.1e-75 285.8 241 57.7
HPP92_002502 Vanilla planifolia HOM05D006147 ORTHO05D007501 3.1e-75 285.8 241 58.5
Os02g0834700 Oryza sativa ssp. japonica HOM05D006147 ORTHO05D007501 4.1e-75 285.4 242 57.4
Sp4g00470 Schrenkiella parvula HOM05D006147 ORTHO05D007501 4.1e-75 285.4 243 58.4
Cfa005114 Carpinus fangiana HOM05D006147 ORTHO05D007501 5.3e-75 285.0 241 59.3
Thhalv10000221m.g Eutrema salsugineum HOM05D006147 ORTHO05D007501 5.3e-75 285.0 243 58.4
TWI31G1450 Tripterygium wilfordii HOM05D006147 ORTHO05D007501 7.0e-75 284.6 241 56.8
MCO05G212 Micromonas commoda HOM05D006147 ORTHO05D007501 9.1e-75 284.3 245 58.4
Psat7g138880 Pisum sativum HOM05D006147 ORTHO05D007501 9.1e-75 284.3 241 57.7
ATR0149G025 Amborella trichopoda HOM05D006147 ORTHO05D007501 1.2e-74 283.9 241 58.1
BcaC02g08802 Brassica carinata HOM05D006147 ORTHO05D007501 1.2e-74 283.9 240 59.2
BolC4t26650H Brassica oleracea HOM05D006147 ORTHO05D007501 1.2e-74 283.9 240 59.2
FAN27G3378 Fragaria x ananassa HOM05D006147 ORTHO05D007501 1.2e-74 283.9 241 58.1
Oeu055635.1 Olea europaea HOM05D006147 ORTHO05D007501 1.2e-74 283.9 241 58.5
Ciclev10028728m.g Citrus clementina HOM05D006147 ORTHO05D007501 1.6e-74 283.5 241 57.7
MD05G1055500 Malus domestica HOM05D006147 ORTHO05D007501 2.0e-74 283.1 241 58.1
Gohir.A03G199400 Gossypium hirsutum HOM05D006147 ORTHO05D007501 3.5e-74 282.3 241 57.7
Atru.chr5.3146 Acer truncatum HOM05D006147 ORTHO05D007501 4.5e-74 282.0 241 57.7
PGR042G0282 Punica granatum HOM05D006147 ORTHO05D007501 4.5e-74 282.0 241 57.7
Hund00177 Selenicereus undatus HOM05D006147 ORTHO05D007501 4.5e-74 282.0 240 57.5
arahy.Tifrunner.gnm1.ann1.JUX7JJ Arachis hypogaea HOM05D006147 ORTHO05D007501 5.9e-74 281.6 241 57.7
arahy.Tifrunner.gnm1.ann1.S6V2XE Arachis hypogaea HOM05D006147 ORTHO05D007501 5.9e-74 281.6 241 57.7
Lj3g0027328 Lotus japonicus HOM05D006147 ORTHO05D007501 5.9e-74 281.6 241 57.7
vmacro17420 Vaccinium macrocarpon HOM05D006147 ORTHO05D007501 7.7e-74 281.2 264 54.2
Hund00185 Selenicereus undatus HOM05D006147 ORTHO05D007501 1.0e-73 280.8 239 57.7
VMungo1127G0575 Vigna mungo HOM05D006147 ORTHO05D007501 1.0e-73 280.8 241 57.3
Mapoly0021s0030 Marchantia polymorpha HOM05D006147 ORTHO05D007501 1.3e-73 280.4 239 58.6
Phvul.011G038600 Phaseolus vulgaris HOM05D006147 ORTHO05D007501 3.8e-73 278.9 241 57.3
Gohir.D02G220700 Gossypium hirsutum HOM05D006147 ORTHO05D007501 5.0e-73 278.5 241 57.3
CANSAT11G2690 Cannabis sativa HOM05D006147 ORTHO05D007501 6.5e-73 278.1 241 56.4
FAN15G0109 Fragaria x ananassa HOM05D006147 ORTHO05D007501 3.2e-72 275.8 244 56.6
SMO146G0042 Selaginella moellendorffii HOM05D006147 ORTHO05D007501 7.2e-72 274.6 239 55.6
AUR62010384 Chenopodium quinoa HOM05D006147 ORTHO05D007501 1.0e-70 270.8 275 52.0
Duzib248G0035 Durio zibethinus HOM05D006147 ORTHO05D007501 5.2e-70 268.5 281 50.2
Lj5C189G13 Lonicera japonica HOM05D006147 ORTHO05D007501 6.7e-70 268.1 241 56.8
MCO16G248 Micromonas commoda HOM05D006147 ORTHO05D007501 3.3e-69 265.8 244 56.1
Rhsim05G0068100 Rhododendron simsii HOM05D006147 ORTHO05D007501 7.5e-69 264.6 225 59.1
Haze_02237 Corylus avellana HOM05D006147 ORTHO05D007501 6.3e-68 261.5 266 53.4
CDE02G0092 Ceratophyllum demersum HOM05D006147 ORTHO05D007501 1.0e-65 254.2 219 57.5
Sc18g0005390 Simmondsia chinensis HOM05D006147 ORTHO05D007501 2.2e-65 253.1 211 60.2
Nitab4.5_0001154g0060 Nicotiana tabacum HOM05D006147 ORTHO05D007501 5.0e-65 251.9 207 59.9
Zm00001eb259680 Zea mays HOM05D006147 ORTHO05D007501 1.9e-64 250.0 213 59.6
Gorai.005G248600 Gossypium raimondii HOM05D006147 ORTHO05D007501 6.1e-63 245.0 211 57.8
unitig_899.g15602 Utricularia gibba HOM05D006147 ORTHO05D007501 4.0e-62 242.3 265 49.1
Lsat_1_v5_gn_8_127980 Lactuca sativa HOM05D006147 ORTHO05D007501 4.4e-61 238.8 241 53.1
ClCG02G004540 Citrullus lanatus HOM05D006147 ORTHO05D007501 4.8e-60 235.3 240 50.8
MELO3C002785.2 Cucumis melo HOM05D006147 ORTHO05D007501 2.5e-56 223.0 193 58.5
Nitab4.5_0001370g0020 Nicotiana tabacum HOM05D006147 ORTHO05D007501 5.5e-56 221.9 185 59.5
SGA_v2.0_scaffold80G25875 Striga asiatica HOM05D006147 ORTHO05D007501 1.6e-50 203.8 240 43.8
PSO170G3006 Papaver somniferum HOM05D006147 ORTHO05D007501 7.8e-50 201.4 241 46.9
Cc02_g16890 Coffea canephora HOM05D006147 ORTHO05D007501 1.3e-44 184.1 171 55.6
Nn4g26316 Nelumbo nucifera HOM05D006147 ORTHO05D007501 3.7e-44 182.6 122 64.8
Nn6g32490 Nelumbo nucifera HOM05D006147 ORTHO05D007501 3.7e-44 182.6 122 64.8
AUR62040654 Chenopodium quinoa HOM05D006147 ORTHO05D007501 1.1e-40 171.0 278 41.4
C09p25880 Brassica napus HOM05D006147 ORTHO05D007501 5.4e-35 152.1 122 54.9
Dinv41999 Davidia involucrata HOM05D006147 ORTHO05D007501 5.4e-35 152.1 141 58.2
BolC9t55495H Brassica oleracea HOM05D006147 ORTHO05D007501 7.0e-35 151.8 122 54.9
arahy.Tifrunner.gnm1.ann1.B04QBU Arachis hypogaea HOM05D006147 ORTHO05D007501 1.2e-34 151.0 188 44.1
SEGI_33639 Sequoiadendron giganteum HOM05D006147 ORTHO05D007501 4.6e-34 149.1 112 58.9
arahy.Tifrunner.gnm1.ann1.KZ1FWN Arachis hypogaea HOM05D006147 ORTHO05D007501 9.2e-27 124.8 182 40.7
FvH4_2g10480 Fragaria vesca HOM05D006147 ORTHO05D007501 1.0e-25 121.3 171 42.7
Nn6g32256 Nelumbo nucifera HOM05D006147 ORTHO05D007501 3.9e-25 119.4 122 55.7
Pp3s34_200 Physcomitrium patens HOM05D006147 ORTHO05D007501 1.1e-24 117.9 242 31.8
arahy.Tifrunner.gnm1.ann1.63XKYH Arachis hypogaea HOM05D006147 ORTHO05D007501 9.5e-24 114.8 138 47.8
Cc02_g16880 Coffea canephora HOM05D006147 ORTHO05D007501 4.0e-22 109.4 77 64.9
BolC2t08257H Brassica oleracea HOM05D006147 ORTHO05D007501 7.1e-19 98.6 120 45.8
BraA07t28491Z Brassica rapa HOM05D006147 ORTHO05D007501 1.3e-17 94.4 93 49.5
MELO3C028749.2 Cucumis melo HOM05D006147 ORTHO05D007501 2.1e-15 87.0 139 42.4
C02p21180 Brassica napus HOM05D006147 ORTHO05D007501 4.7e-15 85.9 66 53.0
BcaC03g14677 Brassica carinata HOM05D006147 ORTHO05D007501 2.4e-14 83.6 117 41.0
A07p07030 Brassica napus HOM05D006147 ORTHO05D007501 1.4e-11 74.3 93 41.9
arahy.Tifrunner.gnm1.ann1.PBTS15 Arachis hypogaea HOM05D006147 ORTHO05D007501 3.2e-11 73.2 162 29.0
C02p21170 Brassica napus HOM05D006147 ORTHO05D007501 2.1e-10 70.5 115 39.1
CDE04G1860 Ceratophyllum demersum HOM05D006147 ORTHO05D007501 2.1e-10 70.5 44 68.2
MBI05_g17912_MAGBIO Magnolia biondii HOM05D006147 ORTHO05D007501 4.8e-07 59.3 44 59.1


User provided reference genes

Program Settings