Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PRCOL_00000196 Prasinoderma coloniale HOM05D005019 ORTHO05D006625 8.9e-180 633.6 357 100.0
Pp3c26_4890 Physcomitrium patens HOM05D005019 ORTHO05D006625 3.0e-79 299.7 326 56.4
AagrBONN_evm.TU.Sc2ySwM_362.2571 Anthoceros agrestis HOM05D005019 ORTHO05D006625 1.9e-73 280.4 328 43.9
Cre06.g255950 Chlamydomonas reinhardtii HOM05D005019 ORTHO05D006625 2.5e-73 280.0 357 47.1
Mapoly0051s0055 Marchantia polymorpha HOM05D005019 ORTHO05D006625 2.3e-71 273.5 328 43.9
CBR_g21842 Chara braunii HOM05D005019 ORTHO05D006625 3.4e-70 269.6 321 45.2
SMO356G0724 Selaginella moellendorffii HOM05D005019 ORTHO05D006625 2.2e-69 266.9 327 43.7
Actinidia21157 Actinidia chinensis HOM05D005019 ORTHO05D006625 1.9e-68 263.8 326 43.3
Glyma.13G255400 Glycine max HOM05D005019 ORTHO05D006625 1.9e-68 263.8 326 42.3
PSO210G0391 Papaver somniferum HOM05D005019 ORTHO05D006625 5.4e-68 262.3 326 42.3
Phvul.006G200700 Phaseolus vulgaris HOM05D005019 ORTHO05D006625 7.0e-68 261.9 326 42.0
RcHm_v2.0_Chr6g0289431 Rosa chinensis HOM05D005019 ORTHO05D006625 1.2e-67 261.2 328 42.7
TWI31G0602 Tripterygium wilfordii HOM05D005019 ORTHO05D006625 1.2e-67 261.2 328 42.7
VMungo0540G2473 Vigna mungo HOM05D005019 ORTHO05D006625 1.2e-67 261.2 326 41.4
FAN27G0650 Fragaria x ananassa HOM05D005019 ORTHO05D006625 1.6e-67 260.8 328 42.4
RcHm_v2.0_Chr7g0205871 Rosa chinensis HOM05D005019 ORTHO05D006625 2.0e-67 260.4 326 42.3
GSVIVG01003806001 Vitis vinifera HOM05D005019 ORTHO05D006625 2.0e-67 260.4 326 42.0
FvH4_2g22480 Fragaria vesca HOM05D005019 ORTHO05D006625 2.7e-67 260.0 328 42.4
FAN24G1214 Fragaria x ananassa HOM05D005019 ORTHO05D006625 2.7e-67 260.0 328 42.4
Lalb_Chr03g0030271 Lupinus albus HOM05D005019 ORTHO05D006625 2.7e-67 260.0 328 41.5
Lsat_1_v5_gn_9_9921 Lactuca sativa HOM05D005019 ORTHO05D006625 3.5e-67 259.6 328 42.7
FAN20G1740 Fragaria x ananassa HOM05D005019 ORTHO05D006625 6.0e-67 258.8 328 42.1
Lalb_Chr19g0134621 Lupinus albus HOM05D005019 ORTHO05D006625 6.0e-67 258.8 328 41.5
Gohir.D11G348100 Gossypium hirsutum HOM05D005019 ORTHO05D006625 7.8e-67 258.5 326 42.0
Gorai.007G378500 Gossypium raimondii HOM05D005019 ORTHO05D006625 7.8e-67 258.5 326 42.0
ATR0564G197 Amborella trichopoda HOM05D005019 ORTHO05D006625 1.3e-66 257.7 326 42.6
MELO3C020849.2 Cucumis melo HOM05D005019 ORTHO05D006625 1.3e-66 257.7 326 42.0
Carub.0006s1224 Capsella rubella HOM05D005019 ORTHO05D006625 1.7e-66 257.3 330 41.2
Eucgr.K03309 Eucalyptus grandis HOM05D005019 ORTHO05D006625 1.7e-66 257.3 330 42.1
FvH4_5g20520 Fragaria vesca HOM05D005019 ORTHO05D006625 2.3e-66 256.9 326 41.7
Gohir.A11G329100 Gossypium hirsutum HOM05D005019 ORTHO05D006625 3.0e-66 256.5 326 41.7
Duzib147G1145 Durio zibethinus HOM05D005019 ORTHO05D006625 3.9e-66 256.1 326 41.4
Lj1g0019097 Lotus japonicus HOM05D005019 ORTHO05D006625 3.9e-66 256.1 328 41.2
Manes.16G024300 Manihot esculenta HOM05D005019 ORTHO05D006625 3.9e-66 256.1 326 42.0
PSO210G5187 Papaver somniferum HOM05D005019 ORTHO05D006625 3.9e-66 256.1 326 41.4
Nitab4.5_0008299g0020 Nicotiana tabacum HOM05D005019 ORTHO05D006625 5.0e-66 255.8 326 41.4
PGSC0003DMG400023686 Solanum tuberosum HOM05D005019 ORTHO05D006625 5.0e-66 255.8 326 41.4
AT5G14050 Arabidopsis thaliana HOM05D005019 ORTHO05D006625 6.6e-66 255.4 322 41.3
CANSAT35G0193 Cannabis sativa HOM05D005019 ORTHO05D006625 6.6e-66 255.4 326 41.7
THA.LOC104806394 Tarenaya hassleriana HOM05D005019 ORTHO05D006625 6.6e-66 255.4 326 42.0
Gohir.D04G014300 Gossypium hirsutum HOM05D005019 ORTHO05D006625 8.6e-66 255.0 326 41.7
Potri.005G218600 Populus trichocarpa HOM05D005019 ORTHO05D006625 8.6e-66 255.0 326 41.7
Aqoxy5G00344 Aquilegia oxysepala HOM05D005019 ORTHO05D006625 1.1e-65 254.6 326 42.6
Aqoxy6G01670 Aquilegia oxysepala HOM05D005019 ORTHO05D006625 1.1e-65 254.6 326 42.6
FAN18G2643 Fragaria x ananassa HOM05D005019 ORTHO05D006625 1.1e-65 254.6 326 41.4
Glyma.15G059400 Glycine max HOM05D005019 ORTHO05D006625 1.1e-65 254.6 328 40.9
Nitab4.5_0001370g0040 Nicotiana tabacum HOM05D005019 ORTHO05D006625 1.1e-65 254.6 326 41.4
Thecc.01G159500 Theobroma cacao HOM05D005019 ORTHO05D006625 1.1e-65 254.6 326 41.1
GSVIVG01000726001 Vitis vinifera HOM05D005019 ORTHO05D006625 1.1e-65 254.6 326 41.4
Dinv22477 Davidia involucrata HOM05D005019 ORTHO05D006625 1.5e-65 254.2 326 41.1
Prupe.8G231800 Prunus persica HOM05D005019 ORTHO05D006625 1.5e-65 254.2 326 41.1
AL6G24710 Arabidopsis lyrata HOM05D005019 ORTHO05D006625 1.9e-65 253.8 322 41.0
Thhalv10013183m.g Eutrema salsugineum HOM05D005019 ORTHO05D006625 1.9e-65 253.8 324 41.0
TPR.G9511 Trifolium pratense HOM05D005019 ORTHO05D006625 1.9e-65 253.8 328 40.9
ECA247G2036 Erigeron canadensis HOM05D005019 ORTHO05D006625 2.5e-65 253.4 326 41.4
FAN15G0975 Fragaria x ananassa HOM05D005019 ORTHO05D006625 2.5e-65 253.4 328 42.1
Nitab4.5_0010414g0010 Nicotiana tabacum HOM05D005019 ORTHO05D006625 2.5e-65 253.4 326 41.1
Migut.N02183 Erythranthe guttata HOM05D005019 ORTHO05D006625 3.3e-65 253.1 326 42.0
Nitab4.5_0003006g0020 Nicotiana tabacum HOM05D005019 ORTHO05D006625 3.3e-65 253.1 326 40.8
Psat1g046760 Pisum sativum HOM05D005019 ORTHO05D006625 3.3e-65 253.1 328 40.5
SEGI_19346 Sequoiadendron giganteum HOM05D005019 ORTHO05D006625 3.3e-65 253.1 326 41.7
Cpa.g.sc200.5 Carica papaya HOM05D005019 ORTHO05D006625 4.3e-65 252.7 326 40.2
Sp6g29950 Schrenkiella parvula HOM05D005019 ORTHO05D006625 4.3e-65 252.7 321 40.8
CARHR199310 Cardamine hirsuta HOM05D005019 ORTHO05D006625 5.6e-65 252.3 321 40.8
Sed0015889 Sechium edule HOM05D005019 ORTHO05D006625 5.6e-65 252.3 326 42.0
Gorai.012G016900 Gossypium raimondii HOM05D005019 ORTHO05D006625 7.3e-65 251.9 326 41.4
Medtr2g009800 Medicago truncatula HOM05D005019 ORTHO05D006625 7.3e-65 251.9 328 40.9
Aa31LG11G14850 Aethionema arabicum HOM05D005019 ORTHO05D006625 9.5e-65 251.5 321 40.5
arahy.Tifrunner.gnm1.ann1.TZR8AU Arachis hypogaea HOM05D005019 ORTHO05D006625 1.2e-64 251.1 327 40.4
MSTRG.12540 Avicennia marina HOM05D005019 ORTHO05D006625 1.2e-64 251.1 326 41.4
Ca_00175_v3 Cicer arietinum L. HOM05D005019 ORTHO05D006625 1.2e-64 251.1 328 40.9
Cc02_g22310 Coffea canephora HOM05D005019 ORTHO05D006625 1.2e-64 251.1 322 41.9
Peaxi162Scf00045g00177 Petunia axillaris HOM05D005019 ORTHO05D006625 1.2e-64 251.1 326 41.4
PGR044G0331 Punica granatum HOM05D005019 ORTHO05D006625 1.2e-64 251.1 326 40.5
ClCG02G012250 Citrullus lanatus HOM05D005019 ORTHO05D006625 1.6e-64 250.8 326 41.7
CsaV3_2G016400 Cucumis sativus L. HOM05D005019 ORTHO05D006625 1.6e-64 250.8 326 41.7
Sopen10g030790 Solanum pennellii HOM05D005019 ORTHO05D006625 1.6e-64 250.8 326 40.8
HanXRQChr14g0454081 Helianthus annuus HOM05D005019 ORTHO05D006625 2.1e-64 250.4 328 40.9
Psat1g214520 Pisum sativum HOM05D005019 ORTHO05D006625 2.1e-64 250.4 328 40.2
SalBow3G3235 Salvia bowleyana HOM05D005019 ORTHO05D006625 2.1e-64 250.4 326 40.8
Cfa002330 Carpinus fangiana HOM05D005019 ORTHO05D006625 2.8e-64 250.0 324 40.4
Lj1P543T22 Lonicera japonica HOM05D005019 ORTHO05D006625 2.8e-64 250.0 326 40.2
MD05G1205400 Malus domestica HOM05D005019 ORTHO05D006625 3.6e-64 249.6 328 40.5
MD10G1192400 Malus domestica HOM05D005019 ORTHO05D006625 3.6e-64 249.6 328 40.9
Ciclev10019516m.g Citrus clementina HOM05D005019 ORTHO05D006625 6.2e-64 248.8 326 40.8
FAN04G2884 Fragaria x ananassa HOM05D005019 ORTHO05D006625 6.2e-64 248.8 326 40.5
Lsat_1_v5_gn_8_3120 Lactuca sativa HOM05D005019 ORTHO05D006625 6.2e-64 248.8 324 41.0
Lj1C59T1 Lonicera japonica HOM05D005019 ORTHO05D006625 6.2e-64 248.8 326 39.6
Sc04g0003030 Simmondsia chinensis HOM05D005019 ORTHO05D006625 6.2e-64 248.8 324 41.4
Hma1.2p1_1029F.1_g249600 Hydrangea macrophylla HOM05D005019 ORTHO05D006625 8.1e-64 248.4 325 40.9
Medtr2g101620 Medicago truncatula HOM05D005019 ORTHO05D006625 8.1e-64 248.4 328 39.9
CiPaw.03G257900 Carya illinoinensis HOM05D005019 ORTHO05D006625 1.4e-63 247.7 326 40.8
Prupe.5G054300 Prunus persica HOM05D005019 ORTHO05D006625 1.4e-63 247.7 326 40.8
HPP92_026109 Vanilla planifolia HOM05D005019 ORTHO05D006625 1.4e-63 247.7 326 41.1
Dinv34572 Davidia involucrata HOM05D005019 ORTHO05D006625 2.3e-63 246.9 326 40.2
HPP92_022900 Vanilla planifolia HOM05D005019 ORTHO05D006625 2.3e-63 246.9 326 41.1
Solyc10g080180.3 Solanum lycopersicum HOM05D005019 ORTHO05D006625 3.1e-63 246.5 329 41.6
Atru.chr5.1578 Acer truncatum HOM05D005019 ORTHO05D006625 2.0e-62 243.8 326 40.5
SalBow6G4122 Salvia bowleyana HOM05D005019 ORTHO05D006625 2.0e-62 243.8 326 40.2
TAR633G0331 Trochodendron aralioides HOM05D005019 ORTHO05D006625 3.4e-62 243.0 317 41.0
Ah.02g113910 Amaranthus hybridus HOM05D005019 ORTHO05D006625 5.8e-62 242.3 326 40.8
Os07g0603200 Oryza sativa ssp. japonica HOM05D005019 ORTHO05D006625 5.8e-62 242.3 326 39.3
Rhsim07G0080400 Rhododendron simsii HOM05D005019 ORTHO05D006625 7.5e-62 241.9 326 39.6
Nn7g37931 Nelumbo nucifera HOM05D005019 ORTHO05D006625 9.9e-62 241.5 315 41.0
AUR62008493 Chenopodium quinoa HOM05D005019 ORTHO05D006625 1.7e-61 240.7 326 40.2
Hund02608 Selenicereus undatus HOM05D005019 ORTHO05D006625 1.7e-61 240.7 328 41.8
AUR62037688 Chenopodium quinoa HOM05D005019 ORTHO05D006625 3.7e-61 239.6 326 40.2
EL10Ac5g11096 Beta vulgaris HOM05D005019 ORTHO05D006625 6.4e-61 238.8 326 40.2
ClCG07G000610 Citrullus lanatus HOM05D005019 ORTHO05D006625 1.1e-60 238.0 313 41.2
Zm00001eb227850 Zea mays HOM05D005019 ORTHO05D006625 1.9e-60 237.3 326 38.3
SGA_v2.0_scaffold80G25914 Striga asiatica HOM05D005019 ORTHO05D006625 2.4e-60 236.9 326 39.9
AUR62021601 Chenopodium quinoa HOM05D005019 ORTHO05D006625 3.2e-60 236.5 326 39.9
Haze_24536 Corylus avellana HOM05D005019 ORTHO05D006625 7.1e-60 235.3 315 39.7
MCO01G264 Micromonas commoda HOM05D005019 ORTHO05D006625 9.2e-60 235.0 341 41.1
Sabra05G0167700 Salix brachista HOM05D005019 ORTHO05D006625 2.1e-59 233.8 313 40.3
DCAR_002684 Daucus carota HOM05D005019 ORTHO05D006625 2.7e-59 233.4 326 39.0
CDE04G3201 Ceratophyllum demersum HOM05D005019 ORTHO05D006625 6.0e-59 232.3 322 39.1
vmacro14869 Vaccinium macrocarpon HOM05D005019 ORTHO05D006625 6.6e-58 228.8 313 38.7
unitig_8.g4702 Utricularia gibba HOM05D005019 ORTHO05D006625 1.5e-57 227.6 326 39.6
CSS0021329 Camellia sinensis var. sinensis HOM05D005019 ORTHO05D006625 1.9e-57 227.3 326 39.9
Gohir.A05G401500 Gossypium hirsutum HOM05D005019 ORTHO05D006625 2.5e-57 226.9 325 39.1
Oeu018172.1 Olea europaea HOM05D005019 ORTHO05D006625 2.5e-57 226.9 326 38.0
SHI13722 Sapria himalayana HOM05D005019 ORTHO05D006625 4.3e-57 226.1 332 39.2
Thecc.05G016300 Theobroma cacao HOM05D005019 ORTHO05D006625 4.3e-57 226.1 326 38.3
AUR62025557 Chenopodium quinoa HOM05D005019 ORTHO05D006625 3.6e-56 223.0 316 39.2
Lj6g0023367 Lotus japonicus HOM05D005019 ORTHO05D006625 3.1e-55 219.9 332 38.6
MBI12_g17287_MAGBIO Magnolia biondii HOM05D005019 ORTHO05D006625 4.1e-52 209.5 325 37.2
Ciclev10006829m.g Citrus clementina HOM05D005019 ORTHO05D006625 1.5e-49 201.1 321 37.1
Rhsim01G0269300 Rhododendron simsii HOM05D005019 ORTHO05D006625 2.4e-44 183.7 261 38.3
CDE02G2819 Ceratophyllum demersum HOM05D005019 ORTHO05D006625 9.0e-39 165.2 221 38.9
QL02p075842 Quercus lobata HOM05D005019 ORTHO05D006625 1.1e-36 158.3 242 37.6
BcaNung06034 Brassica carinata HOM05D005019 ORTHO05D006625 6.7e-34 149.1 217 37.8
MBI17_g40264_MAGBIO Magnolia biondii HOM05D005019 ORTHO05D006625 2.1e-32 144.1 159 44.7
AagrBONN_evm.TU.Sc2ySwM_228.5554 Anthoceros agrestis HOM05D005019 ORTHO05D006625 1.4e-31 141.4 161 41.6
CSS0011909 Camellia sinensis var. sinensis HOM05D005019 ORTHO05D006625 5.3e-31 139.4 217 36.4
MBI17_g13392_MAGBIO Magnolia biondii HOM05D005019 ORTHO05D012924 4.2e-28 129.8 295 31.5
Cfa024923 Carpinus fangiana HOM05D005019 ORTHO05D126389 2.4e-23 114.0 359 26.5
AUR62008687 Chenopodium quinoa HOM05D005019 ORTHO05D006625 1.3e-18 98.2 192 31.2
TAR383G0651 Trochodendron aralioides HOM05D005019 ORTHO05D006625 2.4e-15 87.4 126 40.5
Actinidia24938 Actinidia chinensis HOM05D005019 ORTHO05D006625 2.5e-09 67.4 263 25.5
BcaB01g06348 Brassica carinata HOM05D005019 ORTHO05D006625 2.4e-07 60.8 81 35.8


User provided reference genes

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