Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PRCOL_00000175 Prasinoderma coloniale HOM05D004595 ORTHO05D005800 0.0e+00 1564.7 800 100.0
Cfa024948 Carpinus fangiana HOM05D004595 ORTHO05D005800 1.2e-19 102.8 274 27.0
Ciclev10018937m.g Citrus clementina HOM05D004595 ORTHO05D005800 1.7e-16 92.4 303 30.4
Lsat_1_v5_gn_6_93760 Lactuca sativa HOM05D004595 ORTHO05D005800 5.3e-15 87.4 320 27.8
Carub.0007s2444 Capsella rubella HOM05D004595 ORTHO05D005800 9.1e-15 86.7 349 27.5
A01p20330 Brassica napus HOM05D004595 ORTHO05D005800 1.6e-14 85.9 342 26.6
C01p25500 Brassica napus HOM05D004595 ORTHO05D005800 4.5e-14 84.3 342 27.2
THA.LOC104807924 Tarenaya hassleriana HOM05D004595 ORTHO05D005800 5.9e-14 84.0 393 28.0
AagrBONN_evm.TU.Sc2ySwM_344.2176 Anthoceros agrestis HOM05D004595 ORTHO05D005800 7.7e-14 83.6 292 27.4
AT4G16970 Arabidopsis thaliana HOM05D004595 ORTHO05D005800 7.7e-14 83.6 354 27.4
Zm00001eb391030 Zea mays HOM05D004595 ORTHO05D005800 7.7e-14 83.6 322 28.3
Prupe.5G058600 Prunus persica HOM05D004595 ORTHO05D005800 1.0e-13 83.2 361 27.7
BcaNung00138 Brassica carinata HOM05D004595 ORTHO05D005800 1.3e-13 82.8 341 27.0
Gohir.D11G027300 Gossypium hirsutum HOM05D004595 ORTHO05D005800 1.7e-13 82.4 357 25.8
CsaV3_6G008680 Cucumis sativus L. HOM05D004595 ORTHO05D005800 2.2e-13 82.0 324 28.1
AL7G37750 Arabidopsis lyrata HOM05D004595 ORTHO05D005800 2.9e-13 81.6 352 27.3
Sp7g17210 Schrenkiella parvula HOM05D004595 ORTHO05D005800 3.8e-13 81.3 351 26.2
Atru.chr9.1225 Acer truncatum HOM05D004595 ORTHO05D005800 5.0e-13 80.9 349 28.1
Gorai.007G029800 Gossypium raimondii HOM05D004595 ORTHO05D005800 6.5e-13 80.5 362 26.2
BraA01t01963Z Brassica rapa HOM05D004595 ORTHO05D005800 8.5e-13 80.1 357 25.8
BolC1t02501H Brassica oleracea HOM05D004595 ORTHO05D005800 1.1e-12 79.7 348 26.4
Glyma.03G109300 Glycine max HOM05D004595 ORTHO05D005800 1.1e-12 79.7 341 26.7
Gohir.A08G165500 Gossypium hirsutum HOM05D004595 ORTHO05D005800 1.1e-12 79.7 354 26.0
HanXRQChr13g0418201 Helianthus annuus HOM05D004595 ORTHO05D005800 1.1e-12 79.7 335 27.2
PGR031G0135 Punica granatum HOM05D004595 ORTHO05D005800 1.5e-12 79.3 353 26.9
GSVIVG01018293001 Vitis vinifera HOM05D004595 ORTHO05D005800 1.5e-12 79.3 336 28.0
EL10Ac5g12285 Beta vulgaris HOM05D004595 ORTHO05D005800 1.9e-12 79.0 348 27.0
Migut.E00822 Erythranthe guttata HOM05D004595 ORTHO05D005800 1.9e-12 79.0 337 26.7
Gohir.D08G184200 Gossypium hirsutum HOM05D004595 ORTHO05D005800 2.5e-12 78.6 355 25.4
Gorai.004G193500 Gossypium raimondii HOM05D004595 ORTHO05D005800 2.5e-12 78.6 355 25.4
Thecc.03G242900 Theobroma cacao HOM05D004595 ORTHO05D005800 2.5e-12 78.6 354 25.4
Phvul.010G046800 Phaseolus vulgaris HOM05D004595 ORTHO05D005800 3.2e-12 78.2 343 26.2
ClCG06G002450 Citrullus lanatus HOM05D004595 ORTHO05D005800 4.2e-12 77.8 526 23.8
PSO063G2875 Papaver somniferum HOM05D004595 ORTHO05D005800 4.2e-12 77.8 339 26.5
AUR62018854 Chenopodium quinoa HOM05D004595 ORTHO05D005800 7.2e-12 77.0 364 26.6
Lj2C227T10 Lonicera japonica HOM05D004595 ORTHO05D005800 7.2e-12 77.0 344 27.3
QL04p029927 Quercus lobata HOM05D004595 ORTHO05D005800 7.2e-12 77.0 331 26.0
Cc08_g11470 Coffea canephora HOM05D004595 ORTHO05D005800 9.4e-12 76.6 355 25.4
Duzib205G1146 Durio zibethinus HOM05D004595 ORTHO05D005800 9.4e-12 76.6 350 25.7
Gohir.A11G028800 Gossypium hirsutum HOM05D004595 ORTHO05D005800 9.4e-12 76.6 357 24.6
CBR_g3704 Chara braunii HOM05D004595 ORTHO05D005800 1.2e-11 76.3 76 48.7
Thhalv10024346m.g Eutrema salsugineum HOM05D004595 ORTHO05D005800 1.2e-11 76.3 341 26.1
FvH4_7g10370 Fragaria vesca HOM05D004595 ORTHO05D005800 1.6e-11 75.9 341 25.5
Solyc08g077990.3 Solanum lycopersicum HOM05D004595 ORTHO05D005800 1.6e-11 75.9 343 25.1
Glyma.07G115800 Glycine max HOM05D004595 ORTHO05D005800 2.1e-11 75.5 340 25.6
AUR62007157 Chenopodium quinoa HOM05D004595 ORTHO05D005800 2.7e-11 75.1 366 26.5
Lj3g0024575 Lotus japonicus HOM05D004595 ORTHO05D005800 2.7e-11 75.1 341 25.2
PGSC0003DMG400026251 Solanum tuberosum HOM05D004595 ORTHO05D005800 2.7e-11 75.1 347 23.9
SGA_v2.0_scaffold20G09239 Striga asiatica HOM05D004595 ORTHO05D005800 2.7e-11 75.1 373 27.9
TWI60G0774 Tripterygium wilfordii HOM05D004595 ORTHO05D005800 2.7e-11 75.1 360 25.6
Aqoxy3G02685 Aquilegia oxysepala HOM05D004595 ORTHO05D005800 3.6e-11 74.7 348 26.1
CANSAT25G1576 Cannabis sativa HOM05D004595 ORTHO05D005800 3.6e-11 74.7 367 24.5
FAN06G0382 Fragaria x ananassa HOM05D004595 ORTHO05D005800 3.6e-11 74.7 344 25.3
Sopen08g026500 Solanum pennellii HOM05D004595 ORTHO05D005800 3.6e-11 74.7 341 25.2
Sed0025323 Sechium edule HOM05D004595 ORTHO05D005800 4.7e-11 74.3 349 25.5
arahy.Tifrunner.gnm1.ann1.XA3BYX Arachis hypogaea HOM05D004595 ORTHO05D005800 6.1e-11 73.9 342 25.1
BcaC09g50431 Brassica carinata HOM05D004595 ORTHO05D005800 6.1e-11 73.9 365 26.0
FAN10G2859 Fragaria x ananassa HOM05D004595 ORTHO05D005800 6.1e-11 73.9 341 24.9
PSO782G5445 Papaver somniferum HOM05D004595 ORTHO05D005800 6.1e-11 73.9 346 24.9
RcHm_v2.0_Chr7g0205281 Rosa chinensis HOM05D004595 ORTHO05D005800 6.1e-11 73.9 355 26.8
MD04G1051700 Malus domestica HOM05D004595 ORTHO05D005800 8.0e-11 73.6 340 26.5
Medtr8g007150 Medicago truncatula HOM05D004595 ORTHO05D005800 8.0e-11 73.6 344 25.9
Sabra03G0053300 Salix brachista HOM05D004595 ORTHO05D005800 8.0e-11 73.6 349 26.1
SalBow1G8649 Salvia bowleyana HOM05D004595 ORTHO05D005800 1.0e-10 73.2 332 25.9
arahy.Tifrunner.gnm1.ann1.F9ZABX Arachis hypogaea HOM05D004595 ORTHO05D005800 1.4e-10 72.8 342 25.1
FAN06G4364 Fragaria x ananassa HOM05D004595 ORTHO05D005800 1.4e-10 72.8 344 25.3
Lalb_Chr12g0210541 Lupinus albus HOM05D004595 ORTHO05D005800 1.4e-10 72.8 340 25.6
Nn1g08279 Nelumbo nucifera HOM05D004595 ORTHO05D005800 1.4e-10 72.8 343 25.7
Potri.001G151900 Populus trichocarpa HOM05D004595 ORTHO05D005800 1.4e-10 72.8 351 24.5
SalBow1G1528 Salvia bowleyana HOM05D004595 ORTHO05D005800 1.4e-10 72.8 337 27.9
TAR375G0350 Trochodendron aralioides HOM05D004595 ORTHO05D005800 1.8e-10 72.4 347 25.4
FAN01G2950 Fragaria x ananassa HOM05D004595 ORTHO05D005800 2.3e-10 72.0 346 25.7
Peaxi162Scf00446g00213 Petunia axillaris HOM05D004595 ORTHO05D005800 2.3e-10 72.0 110 37.3
Sabra01G0121600 Salix brachista HOM05D004595 ORTHO05D005800 2.3e-10 72.0 350 24.6
COL.COLO4_07512 Corchorus olitorius HOM05D004595 ORTHO05D005800 3.0e-10 71.6 294 24.1
Aa31LG2G13050 Aethionema arabicum HOM05D004595 ORTHO05D005800 4.0e-10 71.2 357 24.4
ATR0665G378 Amborella trichopoda HOM05D004595 ORTHO05D005800 4.0e-10 71.2 313 27.5
CSS0009672 Camellia sinensis var. sinensis HOM05D004595 ORTHO05D005800 4.0e-10 71.2 347 27.1
CAN.G761.19 Capsicum annuum HOM05D004595 ORTHO05D005800 4.0e-10 71.2 345 25.2
FAN03G1267 Fragaria x ananassa HOM05D004595 ORTHO05D005800 4.0e-10 71.2 344 25.3
Manes.01G087300 Manihot esculenta HOM05D004595 ORTHO05D005800 4.0e-10 71.2 356 25.6
CANSAT21G1292 Cannabis sativa HOM05D004595 ORTHO05D005800 5.2e-10 70.9 337 26.4
Oeu037379.1 Olea europaea HOM05D004595 ORTHO05D005800 5.2e-10 70.9 274 27.4
QL12p009065 Quercus lobata HOM05D004595 ORTHO05D005800 5.2e-10 70.9 346 25.1
SMO364G0022 Selaginella moellendorffii HOM05D004595 ORTHO05D005800 5.2e-10 70.9 245 29.0
FvH4_5g20210 Fragaria vesca HOM05D004595 ORTHO05D005800 6.7e-10 70.5 359 25.9
VMungo0331G1450 Vigna mungo HOM05D004595 ORTHO05D005800 8.8e-10 70.1 343 25.7
Ca_14806_v3 Cicer arietinum L. HOM05D004595 ORTHO05D005800 1.1e-09 69.7 289 27.3
FAN13G1547 Fragaria x ananassa HOM05D004595 ORTHO05D005800 1.1e-09 69.7 355 26.5
FAN18G0798 Fragaria x ananassa HOM05D004595 ORTHO05D005800 2.0e-09 68.9 374 25.9
RcHm_v2.0_Chr1g0348071 Rosa chinensis HOM05D004595 ORTHO05D005800 2.0e-09 68.9 342 24.9
MSTRG.1950 Avicennia marina HOM05D004595 ORTHO05D005800 2.6e-09 68.6 334 25.7
Cpa.g.sc42.59 Carica papaya HOM05D004595 ORTHO05D005800 2.6e-09 68.6 363 25.1
MD07G1109800 Malus domestica HOM05D004595 ORTHO05D005800 2.6e-09 68.6 350 24.6
TPR.G32121 Trifolium pratense HOM05D004595 ORTHO05D009144 2.6e-09 68.6 68 45.6
TPR.G32138 Trifolium pratense HOM05D004595 ORTHO05D005800 2.6e-09 68.6 68 45.6
ECA240G1307 Erigeron canadensis HOM05D004595 ORTHO05D005800 3.3e-09 68.2 452 24.8
Potri.003G082600 Populus trichocarpa HOM05D004595 ORTHO05D005800 3.3e-09 68.2 347 26.2
FAN08G0032 Fragaria x ananassa HOM05D004595 ORTHO05D005800 4.4e-09 67.8 365 26.0
CSS0020169 Camellia sinensis var. sinensis HOM05D004595 ORTHO05D005800 5.7e-09 67.4 336 25.6
Mapoly0004s0300 Marchantia polymorpha HOM05D004595 ORTHO05D005800 5.7e-09 67.4 170 28.2
Hund14485 Selenicereus undatus HOM05D004595 ORTHO05D005800 5.7e-09 67.4 341 26.1
MD06G1048400 Malus domestica HOM05D004595 ORTHO05D005800 7.5e-09 67.0 353 25.8
TAR004G0003 Trochodendron aralioides HOM05D004595 ORTHO05D005800 7.5e-09 67.0 331 26.0
vmacro14128 Vaccinium macrocarpon HOM05D004595 ORTHO05D005800 9.7e-09 66.6 69 43.5
Actinidia31498 Actinidia chinensis HOM05D004595 ORTHO05D005800 1.3e-08 66.2 69 43.5
Pp3c24_4600 Physcomitrium patens HOM05D004595 ORTHO05D005800 1.3e-08 66.2 405 23.7
Rhsim07G0118500 Rhododendron simsii HOM05D004595 ORTHO05D005800 1.3e-08 66.2 332 25.6
Sc01g0008080 Simmondsia chinensis HOM05D004595 ORTHO05D005800 1.3e-08 66.2 345 23.8
CARHR223550 Cardamine hirsuta HOM05D004595 ORTHO05D005800 1.7e-08 65.9 82 39.0
DCAR_004592 Daucus carota HOM05D004595 ORTHO05D005800 1.7e-08 65.9 82 41.5
Dinv28866 Davidia involucrata HOM05D004595 ORTHO05D005800 1.7e-08 65.9 295 27.8
Nitab4.5_0000500g0120 Nicotiana tabacum HOM05D004595 ORTHO05D005800 1.7e-08 65.9 69 43.5
Nitab4.5_0007628g0030 Nicotiana tabacum HOM05D004595 ORTHO05D005800 1.7e-08 65.9 69 43.5
Zm00001eb023800 Zea mays HOM05D004595 ORTHO05D005800 1.7e-08 65.9 76 42.1
Dinv44053 Davidia involucrata HOM05D004595 ORTHO05D005800 3.7e-08 64.7 68 44.1
Rhsim07G0118300 Rhododendron simsii HOM05D004595 ORTHO05D005800 3.7e-08 64.7 69 43.5
GSVIVG01002113001 Vitis vinifera HOM05D004595 ORTHO05D005800 4.8e-08 64.3 76 36.8
MBI04_g28359_MAGBIO Magnolia biondii HOM05D004595 ORTHO05D005800 6.3e-08 63.9 282 25.9
Psat4g223720 Pisum sativum HOM05D004595 ORTHO05D005800 6.3e-08 63.9 88 37.5
CARHR290510 Cardamine hirsuta HOM05D004595 ORTHO05D005800 1.1e-07 63.2 125 35.2
Ah.12g054050 Amaranthus hybridus HOM05D004595 ORTHO05D005800 1.8e-07 62.4 69 44.9
FAN10G2341 Fragaria x ananassa HOM05D004595 ORTHO05D005800 1.8e-07 62.4 83 37.3
Os10g0563500 Oryza sativa ssp. japonica HOM05D004595 ORTHO05D005800 2.4e-07 62.0 153 30.1
Haze_07975 Corylus avellana HOM05D004595 ORTHO05D005800 3.1e-07 61.6 82 36.6
DCAR_005580 Daucus carota HOM05D004595 ORTHO05D005800 5.3e-07 60.8 99 37.4
CiPaw.11G069600 Carya illinoinensis HOM05D004595 ORTHO05D005800 2.7e-06 58.5 345 24.3
TAR374G0819 Trochodendron aralioides HOM05D004595 ORTHO05D005800 4.5e-06 57.8 72 38.9


User provided reference genes

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