Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PRCOL_00000154 Prasinoderma coloniale HOM05D003801 ORTHO05D004812 0.0e+00 1972.6 1071 100.0
CBR_g29785 Chara braunii HOM05D003801 ORTHO05D004812 2.0e-166 590.9 1041 37.1
SMO347G0592 Selaginella moellendorffii HOM05D003801 ORTHO05D004812 1.2e-158 565.1 1028 34.6
Pp3c17_6540 Physcomitrium patens HOM05D003801 ORTHO05D004812 5.8e-158 562.8 1021 35.7
Mapoly0002s0142 Marchantia polymorpha HOM05D003801 ORTHO05D004812 4.6e-155 553.1 1064 34.3
Psat5g150840 Pisum sativum HOM05D003801 ORTHO05D004812 3.2e-148 530.4 1001 34.9
LjContig00141g0011314 Lotus japonicus HOM05D003801 ORTHO05D004812 9.3e-148 528.9 1021 35.3
Atru.chr1.2566 Acer truncatum HOM05D003801 ORTHO05D004812 1.2e-147 528.5 1058 34.4
SEGI_40714 Sequoiadendron giganteum HOM05D003801 ORTHO05D004812 7.8e-147 525.8 1073 34.2
Ca_05689_v3 Cicer arietinum L. HOM05D003801 ORTHO05D004812 1.0e-146 525.4 1058 34.3
TWI79G0650 Tripterygium wilfordii HOM05D003801 ORTHO05D004812 2.3e-146 524.2 1021 35.3
MCO16G620 Micromonas commoda HOM05D003801 ORTHO05D004812 8.7e-146 522.3 993 34.5
Thecc.09G360800 Theobroma cacao HOM05D003801 ORTHO05D004812 1.1e-145 521.9 1020 34.1
RcHm_v2.0_Chr5g0072271 Rosa chinensis HOM05D003801 ORTHO05D004812 1.5e-145 521.5 1053 34.5
Sed0013919 Sechium edule HOM05D003801 ORTHO05D004812 1.3e-144 518.5 1054 33.5
VMungo0647G2088 Vigna mungo HOM05D003801 ORTHO05D004812 1.3e-144 518.5 1018 34.9
TWI75G1891 Tripterygium wilfordii HOM05D003801 ORTHO05D004812 1.6e-144 518.1 1020 34.3
Psat2g052760 Pisum sativum HOM05D003801 ORTHO05D004812 2.1e-144 517.7 1053 33.7
Cpa.g.sc173.16 Carica papaya HOM05D003801 ORTHO05D004812 4.8e-144 516.5 1017 33.7
Medtr5g074690 Medicago truncatula HOM05D003801 ORTHO05D004812 2.4e-143 514.2 1031 34.2
Gohir.D03G144200 Gossypium hirsutum HOM05D003801 ORTHO05D004812 3.1e-143 513.8 1053 34.0
Gorai.003G151500 Gossypium raimondii HOM05D003801 ORTHO05D004812 4.0e-143 513.5 1053 34.0
Manes.18G140750 Manihot esculenta HOM05D003801 ORTHO05D004812 5.3e-143 513.1 1017 34.5
CiPaw.13G066600 Carya illinoinensis HOM05D003801 ORTHO05D004812 6.9e-143 512.7 1050 34.1
FvH4_3g40080 Fragaria vesca HOM05D003801 ORTHO05D004812 6.9e-143 512.7 1064 34.1
Glyma.14G201500 Glycine max HOM05D003801 ORTHO05D004812 6.9e-143 512.7 1053 33.8
Duzib168G2305 Durio zibethinus HOM05D003801 ORTHO05D004812 9.0e-143 512.3 1060 34.1
Medtr3g466170 Medicago truncatula HOM05D003801 ORTHO05D004812 2.0e-142 511.1 1017 34.6
GSVIVG01024601001 Vitis vinifera HOM05D003801 ORTHO05D004812 2.6e-142 510.8 1014 34.0
Glyma.02G233700 Glycine max HOM05D003801 ORTHO05D004812 4.5e-142 510.0 1018 33.7
Lalb_Chr10g0103681 Lupinus albus HOM05D003801 ORTHO05D004812 9.9e-142 508.8 1030 34.1
PGR004G1069 Punica granatum HOM05D003801 ORTHO05D004812 9.9e-142 508.8 1029 33.6
Prupe.6G045000 Prunus persica HOM05D003801 ORTHO05D004812 1.3e-141 508.4 1018 34.0
Haze_24439 Corylus avellana HOM05D003801 ORTHO05D004812 6.4e-141 506.1 1057 33.5
Oeu044915.1 Olea europaea HOM05D003801 ORTHO05D004812 6.4e-141 506.1 1020 33.5
Potri.013G154300 Populus trichocarpa HOM05D003801 ORTHO05D004812 6.4e-141 506.1 1055 33.5
Carub.0001s0624 Capsella rubella HOM05D003801 ORTHO05D004812 8.4e-141 505.8 946 35.9
COL.COLO4_11183 Corchorus olitorius HOM05D003801 ORTHO05D004812 8.4e-141 505.8 999 34.2
DCAR_028861 Daucus carota HOM05D003801 ORTHO05D004812 8.4e-141 505.8 1023 33.4
Gohir.A03G024300 Gossypium hirsutum HOM05D003801 ORTHO05D004812 1.1e-140 505.4 1053 33.6
Cfa011800 Carpinus fangiana HOM05D003801 ORTHO05D004812 1.9e-140 504.6 1057 33.0
CDE04G3388 Ceratophyllum demersum HOM05D003801 ORTHO05D004812 1.9e-140 504.6 938 35.1
QL01p018072 Quercus lobata HOM05D003801 ORTHO05D004812 1.9e-140 504.6 940 35.1
FAN11G2663 Fragaria x ananassa HOM05D003801 ORTHO05D004812 2.4e-140 504.2 1058 33.5
C08p02740 Brassica napus HOM05D003801 ORTHO05D004812 7.1e-140 502.7 946 35.2
CARHR006620 Cardamine hirsuta HOM05D003801 ORTHO05D004812 7.1e-140 502.7 946 35.1
TPR.G17744 Trifolium pratense HOM05D003801 ORTHO05D004812 7.1e-140 502.7 924 35.2
TAR623G1445 Trochodendron aralioides HOM05D003801 ORTHO05D004812 9.3e-140 502.3 1025 33.4
Solyc09g031780.3 Solanum lycopersicum HOM05D003801 ORTHO05D004812 1.6e-139 501.5 1023 33.2
CAN.G1702.5 Capsicum annuum HOM05D003801 ORTHO05D004812 2.1e-139 501.1 1015 33.2
TAR369G0201 Trochodendron aralioides HOM05D003801 ORTHO05D004812 2.1e-139 501.1 1018 34.1
Cc01_g15070 Coffea canephora HOM05D003801 ORTHO05D004812 4.6e-139 500.0 1057 33.0
Eucgr.B04013 Eucalyptus grandis HOM05D003801 ORTHO05D004812 1.0e-138 498.8 1020 33.8
Migut.D00836 Erythranthe guttata HOM05D003801 ORTHO05D004812 1.8e-138 498.0 1000 32.6
BcaC05g24660 Brassica carinata HOM05D003801 ORTHO05D004812 2.3e-138 497.7 1059 33.6
TPR.G24942 Trifolium pratense HOM05D003801 ORTHO05D004812 2.3e-138 497.7 1015 33.6
MSTRG.18544 Avicennia marina HOM05D003801 ORTHO05D004812 3.0e-138 497.3 1018 33.5
BraA10t42811Z Brassica rapa HOM05D003801 ORTHO05D004812 3.0e-138 497.3 1059 33.5
BolC5t29277H Brassica oleracea HOM05D003801 ORTHO05D004812 5.1e-138 496.5 1059 33.5
BraA08t35491Z Brassica rapa HOM05D003801 ORTHO05D004812 6.7e-138 496.1 947 35.1
Aa31LG5G6380 Aethionema arabicum HOM05D003801 ORTHO05D004812 8.7e-138 495.7 1072 32.8
A08p35840 Brassica napus HOM05D003801 ORTHO05D004812 1.1e-137 495.4 947 35.0
FAN21G1607 Fragaria x ananassa HOM05D003801 ORTHO05D004812 1.1e-137 495.4 1069 33.3
MSTRG.17901 Avicennia marina HOM05D003801 ORTHO05D004812 1.9e-137 494.6 1020 32.3
Phvul.008G250000 Phaseolus vulgaris HOM05D003801 ORTHO05D004812 1.9e-137 494.6 1018 33.2
Sabra19G0130000 Salix brachista HOM05D003801 ORTHO05D004812 1.9e-137 494.6 1058 33.0
Hma1.2p1_1637F.1_g294880 Hydrangea macrophylla HOM05D003801 ORTHO05D004812 2.5e-137 494.2 1014 33.7
EL10Ac7g15867 Beta vulgaris HOM05D003801 ORTHO05D004812 3.3e-137 493.8 1021 34.6
Nn1g08532 Nelumbo nucifera HOM05D003801 ORTHO05D004812 3.3e-137 493.8 1051 34.2
Sopen09g014770 Solanum pennellii HOM05D003801 ORTHO05D004812 7.4e-137 492.7 1024 33.2
AL1G16990 Arabidopsis lyrata HOM05D003801 ORTHO05D004812 9.6e-137 492.3 1048 33.5
CsaV3_1G036690 Cucumis sativus L. HOM05D003801 ORTHO05D004812 9.6e-137 492.3 1054 33.4
HanXRQChr08g0228441 Helianthus annuus HOM05D003801 ORTHO05D004812 1.3e-136 491.9 1027 33.2
Thhalv10006671m.g Eutrema salsugineum HOM05D003801 ORTHO05D004812 1.6e-136 491.5 1047 33.3
Nn5g27878 Nelumbo nucifera HOM05D003801 ORTHO05D004812 1.6e-136 491.5 1050 34.3
Sc17g0002560 Simmondsia chinensis HOM05D003801 ORTHO05D004812 2.8e-136 490.7 997 33.9
Glyma.18G055700 Glycine max HOM05D003801 ORTHO05D004812 3.7e-136 490.3 939 34.2
AUR62009720 Chenopodium quinoa HOM05D003801 ORTHO05D004812 4.8e-136 490.0 942 34.2
AT1G06950 Arabidopsis thaliana HOM05D003801 ORTHO05D004812 6.2e-136 489.6 1047 33.0
ClCG03G000210 Citrullus lanatus HOM05D003801 ORTHO05D004812 6.2e-136 489.6 1074 33.4
CANSAT54G0450 Cannabis sativa HOM05D003801 ORTHO05D004812 8.1e-136 489.2 1054 33.4
AUR62036227 Chenopodium quinoa HOM05D003801 ORTHO05D004812 8.1e-136 489.2 1047 33.3
ATR0584G141 Amborella trichopoda HOM05D003801 ORTHO05D004812 1.4e-135 488.4 1000 33.4
Sabra19G0125000 Salix brachista HOM05D003801 ORTHO05D004812 1.4e-135 488.4 1066 32.8
ECA247G0395 Erigeron canadensis HOM05D003801 ORTHO05D004812 2.4e-135 487.6 1039 32.9
Peaxi162Scf00095g00168 Petunia axillaris HOM05D003801 ORTHO05D004812 2.4e-135 487.6 1037 32.9
Potri.019G127000 Populus trichocarpa HOM05D003801 ORTHO05D004812 9.0e-135 485.7 1055 32.6
MD03G1058800 Malus domestica HOM05D003801 ORTHO05D004812 2.0e-134 484.6 1050 33.2
Atru.chr1.2574 Acer truncatum HOM05D003801 ORTHO05D004812 1.3e-133 481.9 861 35.7
CSS0002946 Camellia sinensis var. sinensis HOM05D003801 ORTHO05D004812 4.9e-133 479.9 1037 32.6
Sp1g05660 Schrenkiella parvula HOM05D003801 ORTHO05D004812 6.4e-133 479.6 1061 32.4
FAN16G2780 Fragaria x ananassa HOM05D003801 ORTHO05D004812 1.2e-131 475.3 1089 32.4
FAN25G2625 Fragaria x ananassa HOM05D003801 ORTHO05D004812 6.0e-131 473.0 1070 32.4
PSO339G1799 Papaver somniferum HOM05D003801 ORTHO05D004812 6.0e-131 473.0 923 34.6
A10p05480 Brassica napus HOM05D003801 ORTHO05D004812 1.0e-130 472.2 1106 32.2
Aqoxy2G00749 Aquilegia oxysepala HOM05D003801 ORTHO05D004812 1.3e-130 471.9 943 34.4
Lsat_1_v5_gn_9_14381 Lactuca sativa HOM05D003801 ORTHO05D004812 1.8e-130 471.5 1025 33.1
Actinidia32598 Actinidia chinensis HOM05D003801 ORTHO05D004812 2.3e-130 471.1 1036 32.3
PSO384G0852 Papaver somniferum HOM05D003801 ORTHO05D004812 3.0e-130 470.7 1001 33.5
SGA_v2.0_scaffold20G09298 Striga asiatica HOM05D003801 ORTHO05D004812 5.1e-130 469.9 1029 31.6
arahy.Tifrunner.gnm1.ann1.Z7TKRX Arachis hypogaea HOM05D003801 ORTHO05D004812 8.7e-130 469.2 1073 32.2
Sabra13G0124100 Salix brachista HOM05D003801 ORTHO05D004812 2.5e-129 467.6 1075 32.1
Hund05047 Selenicereus undatus HOM05D003801 ORTHO05D004812 3.3e-129 467.2 1022 32.6
unitig_747.g21451 Utricularia gibba HOM05D003801 ORTHO05D004812 1.3e-128 465.3 1039 30.2
Ca_13017_v3 Cicer arietinum L. HOM05D003801 ORTHO05D004812 2.8e-128 464.2 944 33.7
Ciclev10000209m.g Citrus clementina HOM05D003801 ORTHO05D004812 6.2e-128 463.0 935 34.7
MD11G1060900 Malus domestica HOM05D003801 ORTHO05D004812 8.2e-128 462.6 1058 32.6
Zm00001eb044910 Zea mays HOM05D003801 ORTHO05D004812 2.6e-126 457.6 941 31.8
BolC8t47069H Brassica oleracea HOM05D003801 ORTHO05D004812 2.9e-125 454.1 976 33.0
Rhsim13G0062300 Rhododendron simsii HOM05D003801 ORTHO05D004812 8.4e-125 452.6 1041 31.4
vmacro02901 Vaccinium macrocarpon HOM05D003801 ORTHO05D004812 2.1e-123 448.0 946 33.4
MELO3C020500.2 Cucumis melo HOM05D003801 ORTHO05D004812 7.9e-123 446.0 849 34.7
Cre10.g452450 Chlamydomonas reinhardtii HOM05D003801 ORTHO05D004812 5.7e-121 439.9 1096 30.3
Lj1A123G49 Lonicera japonica HOM05D003801 ORTHO05D004812 1.3e-120 438.7 996 31.9
Eucgr.I01027 Eucalyptus grandis HOM05D003801 ORTHO05D004812 1.1e-116 425.6 769 34.7
Dinv28708 Davidia involucrata HOM05D003801 ORTHO05D004812 1.4e-116 425.2 854 32.4
Lj1A124T30 Lonicera japonica HOM05D003801 ORTHO05D004812 3.9e-114 417.2 751 35.2
Pp3c14_10270 Physcomitrium patens HOM05D003801 ORTHO05D004812 3.7e-112 410.6 744 34.5
Cc01_g14930 Coffea canephora HOM05D003801 ORTHO05D004812 2.3e-106 391.3 724 34.7
Nitab4.5_0004906g0050 Nicotiana tabacum HOM05D003801 ORTHO05D004812 2.5e-92 344.7 620 37.3
BcaB03g13435 Brassica carinata HOM05D003801 ORTHO05D004812 3.5e-86 324.3 497 38.8
Os10g0492000 Oryza sativa ssp. japonica HOM05D003801 ORTHO05D004812 1.2e-83 315.8 661 31.5
Nitab4.5_0000486g0130 Nicotiana tabacum HOM05D003801 ORTHO05D004812 3.4e-81 307.8 557 37.0
Nitab4.5_0004637g0060 Nicotiana tabacum HOM05D003801 ORTHO05D004812 2.7e-78 298.1 562 36.3
Dinv12255 Davidia involucrata HOM05D003801 ORTHO05D004812 3.0e-74 284.6 482 37.6
HPP92_014541 Vanilla planifolia HOM05D003801 ORTHO05D004812 1.9e-68 265.4 632 29.0
Hma1.2p1_1421F.1_g282490 Hydrangea macrophylla HOM05D003801 ORTHO05D004812 3.6e-67 261.2 450 38.9
Sabra19G0125200 Salix brachista HOM05D003801 ORTHO05D004812 9.2e-63 246.5 904 25.7
BcaB02g06769 Brassica carinata HOM05D003801 ORTHO05D004812 1.4e-58 232.6 527 31.7
SHI19243 Sapria himalayana HOM05D003801 ORTHO05D004812 1.1e-55 223.0 676 26.2
Sabra19G0124700 Salix brachista HOM05D003801 ORTHO05D004812 1.1e-47 196.4 320 37.2
C05p05030 Brassica napus HOM05D001129 ORTHO05D003814 8.7e-37 160.2 381 34.1
Dinv12256 Davidia involucrata HOM05D003801 ORTHO05D004812 1.9e-36 159.1 263 35.0
MBI15_g33038_MAGBIO Magnolia biondii HOM05D003801 ORTHO05D004812 1.9e-36 159.1 241 41.9
HPP92_014542 Vanilla planifolia HOM05D003801 ORTHO05D004812 5.6e-36 157.5 301 36.5
Sabra19G0125100 Salix brachista HOM05D003801 ORTHO05D004812 9.6e-36 156.8 650 22.8
MBI07_g35968_MAGBIO Magnolia biondii HOM05D003801 ORTHO05D004812 1.1e-34 153.3 244 41.0
Os10g0492300 Oryza sativa ssp. japonica HOM05D003801 ORTHO05D004812 9.0e-34 150.2 331 31.7
Sabra19G0125300 Salix brachista HOM05D003801 ORTHO05D004812 2.6e-33 148.7 262 34.7
AL1G17110 Arabidopsis lyrata HOM05D003801 ORTHO05D004812 3.4e-33 148.3 221 36.7
Oeu050040.1 Olea europaea HOM05D003801 ORTHO05D004812 1.1e-31 143.3 343 28.6
QL05p056751 Quercus lobata HOM05D003801 ORTHO05D004812 7.8e-30 137.1 276 31.2
Lj6A615T90 Lonicera japonica HOM05D003801 ORTHO05D004812 1.1e-28 133.3 255 37.6
PSO339G3141 Papaver somniferum HOM05D003801 ORTHO05D004812 5.3e-26 124.4 235 32.8
QL05p055919 Quercus lobata HOM05D003801 ORTHO05D004812 5.3e-26 124.4 373 28.2
Oeu050039.1 Olea europaea HOM05D003801 ORTHO05D004812 9.3e-23 113.6 496 27.4
Actinidia23184 Actinidia chinensis HOM05D003801 ORTHO05D004812 1.6e-22 112.8 247 36.8
Lj6A615T91 Lonicera japonica HOM05D003801 ORTHO05D004812 2.1e-22 112.5 200 33.0
CDE07G0033 Ceratophyllum demersum HOM05D003801 ORTHO05D004812 1.0e-21 110.2 306 30.7
PSO339G0950 Papaver somniferum HOM05D003801 ORTHO05D004812 3.9e-21 108.2 200 33.0
Hma1.2p1_0613F.1_g189200 Hydrangea macrophylla HOM05D003801 ORTHO05D004812 8.7e-21 107.1 296 27.0
CANSAT80G1859 Cannabis sativa HOM05D003801 ORTHO05D004812 1.5e-20 106.3 137 43.8
arahy.Tifrunner.gnm1.ann1.WCY7KD Arachis hypogaea HOM05D003801 ORTHO05D004812 7.4e-20 104.0 189 34.9
Hma1.2p1_1586F.1_g292110 Hydrangea macrophylla HOM05D003801 ORTHO05D004812 5.8e-17 94.4 238 29.0
Sabra19G0124600 Salix brachista HOM05D003801 ORTHO05D004812 4.9e-16 91.3 227 31.7
SHI19239 Sapria himalayana HOM05D003801 ORTHO05D004812 7.1e-15 87.4 173 35.8
AL1G16970 Arabidopsis lyrata HOM05D003801 ORTHO05D004812 9.3e-15 87.0 75 57.3
AL1G17100 Arabidopsis lyrata HOM05D003801 ORTHO05D004812 9.3e-15 87.0 75 57.3
TAR624G1267 Trochodendron aralioides HOM05D004621 ORTHO05D005817 1.2e-14 86.7 130 39.2
CSS0035288 Camellia sinensis var. sinensis HOM05D003801 ORTHO05D004812 2.7e-14 85.5 122 35.2
C05p05050 Brassica napus HOM05D003801 ORTHO05D004812 8.2e-11 73.9 90 43.3
Glyma.11G162400 Glycine max HOM05D003801 ORTHO05D004812 3.1e-10 72.0 146 30.1
CDE07G0188 Ceratophyllum demersum HOM05D003801 ORTHO05D004812 1.3e-08 66.6 225 28.0
BcaC09g51691 Brassica carinata HOM05D003801 ORTHO05D017532 1.7e-08 66.2 129 36.4
C01p22580 Brassica napus HOM05D003801 ORTHO05D017532 1.7e-08 66.2 115 33.9
BolC1t01884H Brassica oleracea HOM05D003801 ORTHO05D017532 8.4e-08 63.9 115 33.0
TAR629G1141 Trochodendron aralioides HOM05D000566 ORTHO05D000686 2.5e-07 62.4 79 40.5
Cc01_g14940 Coffea canephora HOM05D003801 ORTHO05D004812 3.2e-07 62.0 150 30.7
SEGI_21560 Sequoiadendron giganteum HOM05D003801 ORTHO05D010437 5.5e-07 61.2 236 23.3
BcaC09g50643 Brassica carinata HOM05D003801 ORTHO05D017532 2.1e-06 59.3 113 32.7


User provided reference genes

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