Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PRCOL_00000121 Prasinoderma coloniale HOM05D006418 ORTHO05D008063 5.0e-179 630.9 310 100.0
MCO14G366 Micromonas commoda HOM05D006418 ORTHO05D008063 5.3e-80 302.0 304 54.6
Cre12.g542202 Chlamydomonas reinhardtii HOM05D006418 ORTHO05D008063 2.5e-77 293.1 297 51.9
Mapoly0138s0005 Marchantia polymorpha HOM05D006418 ORTHO05D008063 4.7e-60 235.7 309 45.0
Pp3c15_5030 Physcomitrium patens HOM05D006418 ORTHO05D008063 8.9e-59 231.5 297 45.8
Zm00001eb001200 Zea mays HOM05D006418 ORTHO05D008063 9.2e-56 221.5 303 42.2
Solyc01g091780.4 Solanum lycopersicum HOM05D006418 ORTHO05D008063 2.7e-55 219.9 311 42.4
DCAR_025170 Daucus carota HOM05D006418 ORTHO05D008063 4.5e-55 219.2 312 41.3
PGSC0003DMG400017054 Solanum tuberosum HOM05D006418 ORTHO05D008063 4.5e-55 219.2 311 42.1
Sopen01g037560 Solanum pennellii HOM05D006418 ORTHO05D008063 7.8e-55 218.4 311 42.1
Peaxi162Scf00021g00525 Petunia axillaris HOM05D006418 ORTHO05D008063 1.0e-54 218.0 311 41.8
AagrBONN_evm.TU.Sc2ySwM_344.2134 Anthoceros agrestis HOM05D006418 ORTHO05D008063 1.3e-54 217.6 305 41.0
CBR_g38943 Chara braunii HOM05D006418 ORTHO05D008063 2.9e-54 216.5 267 45.3
EL10Ac1g00963 Beta vulgaris HOM05D006418 ORTHO05D008063 3.8e-54 216.1 259 46.7
CAN.G170.50 Capsicum annuum HOM05D006418 ORTHO05D008063 1.1e-53 214.5 308 42.5
VMungo0331G0376 Vigna mungo HOM05D006418 ORTHO05D008063 1.5e-53 214.2 309 41.7
ATR0757G200 Amborella trichopoda HOM05D006418 ORTHO05D008063 1.9e-53 213.8 285 42.5
FAN03G2411 Fragaria x ananassa HOM05D006418 ORTHO05D008063 3.3e-53 213.0 304 41.4
THA.LOC104827683 Tarenaya hassleriana HOM05D006418 ORTHO05D008063 3.3e-53 213.0 301 41.2
Eucgr.E00217 Eucalyptus grandis HOM05D006418 ORTHO05D008063 4.3e-53 212.6 312 42.0
Aqoxy5G03975 Aquilegia oxysepala HOM05D006418 ORTHO05D008063 5.6e-53 212.2 311 41.5
Phvul.010G092700 Phaseolus vulgaris HOM05D006418 ORTHO05D008063 7.3e-53 211.8 298 40.9
HPP92_014577 Vanilla planifolia HOM05D006418 ORTHO05D008063 7.3e-53 211.8 301 41.5
FvH4_7g13130 Fragaria vesca HOM05D006418 ORTHO05D008063 9.5e-53 211.5 300 42.0
FAN06G0540 Fragaria x ananassa HOM05D006418 ORTHO05D008063 9.5e-53 211.5 300 42.0
FAN06G3976 Fragaria x ananassa HOM05D006418 ORTHO05D008063 9.5e-53 211.5 300 42.0
Nn1g01350 Nelumbo nucifera HOM05D006418 ORTHO05D008063 9.5e-53 211.5 269 45.4
Cc02_g37230 Coffea canephora HOM05D006418 ORTHO05D008063 1.2e-52 211.1 298 41.9
Duzib138G1515 Durio zibethinus HOM05D006418 ORTHO05D008063 1.2e-52 211.1 295 42.0
A07p25300 Brassica napus HOM05D006418 ORTHO05D008063 1.6e-52 210.7 300 40.7
Migut.B01688 Erythranthe guttata HOM05D006418 ORTHO05D008063 2.1e-52 210.3 269 45.0
Nitab4.5_0010430g0060 Nicotiana tabacum HOM05D006418 ORTHO05D008063 2.1e-52 210.3 301 41.2
FAN10G2923 Fragaria x ananassa HOM05D006418 ORTHO05D008063 3.6e-52 209.5 294 41.8
PSO063G7157 Papaver somniferum HOM05D006418 ORTHO05D008063 3.6e-52 209.5 294 41.8
AL5G43290 Arabidopsis lyrata HOM05D006418 ORTHO05D008063 4.7e-52 209.1 301 41.5
MD07G1128500 Malus domestica HOM05D006418 ORTHO05D008063 4.7e-52 209.1 311 40.5
Os03g0117800 Oryza sativa ssp. japonica HOM05D006418 ORTHO05D008063 4.7e-52 209.1 313 40.6
Aa31LG10G15180 Aethionema arabicum HOM05D006418 ORTHO05D008063 6.1e-52 208.8 311 40.8
BcaB02g07390 Brassica carinata HOM05D006418 ORTHO05D008063 6.1e-52 208.8 300 41.3
C06p27060 Brassica napus HOM05D006418 ORTHO05D008063 6.1e-52 208.8 297 40.1
BolC6t37878H Brassica oleracea HOM05D006418 ORTHO05D008063 6.1e-52 208.8 297 40.1
HanXRQChr06g0169031 Helianthus annuus HOM05D006418 ORTHO05D008063 6.1e-52 208.8 300 41.0
TAR375G0873 Trochodendron aralioides HOM05D006418 ORTHO05D008063 6.1e-52 208.8 311 40.8
vmacro13338 Vaccinium macrocarpon HOM05D006418 ORTHO05D008063 6.1e-52 208.8 308 40.6
BraA07t30173Z Brassica rapa HOM05D006418 ORTHO05D008063 8.0e-52 208.4 300 40.0
Dinv32422 Davidia involucrata HOM05D006418 ORTHO05D008063 8.0e-52 208.4 313 40.9
GSVIVG01027527001 Vitis vinifera HOM05D006418 ORTHO05D008063 8.0e-52 208.4 302 41.4
FAN01G2003 Fragaria x ananassa HOM05D006418 ORTHO05D008063 1.0e-51 208.0 311 40.2
Lj7A519G38 Lonicera japonica HOM05D006418 ORTHO05D008063 1.0e-51 208.0 298 41.6
Ca_23755_v3 Cicer arietinum L. HOM05D006418 ORTHO05D008063 1.4e-51 207.6 294 40.1
ECA236G1148 Erigeron canadensis HOM05D006418 ORTHO05D008063 1.4e-51 207.6 298 41.3
Thhalv10006098m.g Eutrema salsugineum HOM05D006418 ORTHO05D008063 1.4e-51 207.6 272 44.9
Actinidia38288 Actinidia chinensis HOM05D006418 ORTHO05D008063 1.8e-51 207.2 294 41.2
arahy.Tifrunner.gnm1.ann1.K1NG1D Arachis hypogaea HOM05D006418 ORTHO05D008063 1.8e-51 207.2 298 41.3
Ciclev10021113m.g Citrus clementina HOM05D006418 ORTHO05D008063 1.8e-51 207.2 311 40.8
Hund27325 Selenicereus undatus HOM05D006418 ORTHO05D008063 1.8e-51 207.2 310 41.3
CANSAT56G2190 Cannabis sativa HOM05D006418 ORTHO05D008063 2.3e-51 206.8 301 40.2
COL.COLO4_12625 Corchorus olitorius HOM05D006418 ORTHO05D008063 2.3e-51 206.8 311 40.5
PGR042G1311 Punica granatum HOM05D006418 ORTHO05D008063 2.3e-51 206.8 294 41.8
Rhsim07G0021100 Rhododendron simsii HOM05D006418 ORTHO05D008063 2.3e-51 206.8 308 40.6
Carub.0005s2773 Capsella rubella HOM05D006418 ORTHO05D008063 3.0e-51 206.5 309 40.1
AT3G61080 Arabidopsis thaliana HOM05D006418 ORTHO05D008063 4.0e-51 206.1 301 40.9
CARHR171390 Cardamine hirsuta HOM05D006418 ORTHO05D008063 4.0e-51 206.1 310 41.3
TWI59G1449 Tripterygium wilfordii HOM05D006418 ORTHO05D008063 4.0e-51 206.1 311 40.5
BcaC08g45098 Brassica carinata HOM05D006418 ORTHO05D008063 6.8e-51 205.3 298 39.9
Gohir.D11G089100 Gossypium hirsutum HOM05D006418 ORTHO05D008063 6.8e-51 205.3 311 39.5
Hma1.2p1_0033F.1_g020630 Hydrangea macrophylla HOM05D006418 ORTHO05D008063 1.2e-50 204.5 259 43.6
ClCG05G001910 Citrullus lanatus HOM05D006418 ORTHO05D008063 1.5e-50 204.1 302 40.4
Glyma.03G017600 Glycine max HOM05D006418 ORTHO05D008063 1.5e-50 204.1 298 40.9
Gorai.007G095100 Gossypium raimondii HOM05D006418 ORTHO05D008063 2.6e-50 203.4 311 39.2
Potri.002G153100 Populus trichocarpa HOM05D006418 ORTHO05D008063 2.6e-50 203.4 279 42.3
Sabra02G0121400 Salix brachista HOM05D006418 ORTHO05D008063 2.6e-50 203.4 279 41.9
CSS0035566 Camellia sinensis var. sinensis HOM05D006418 ORTHO05D008063 3.4e-50 203.0 312 39.7
Lalb_Chr10g0097531 Lupinus albus HOM05D006418 ORTHO05D008063 3.4e-50 203.0 294 40.1
CsaV3_3G009310 Cucumis sativus L. HOM05D006418 ORTHO05D008063 5.8e-50 202.2 248 45.6
Cfa004182 Carpinus fangiana HOM05D006418 ORTHO05D008063 9.8e-50 201.4 295 41.7
RcHm_v2.0_Chr1g0352261 Rosa chinensis HOM05D006418 ORTHO05D008063 9.8e-50 201.4 304 40.5
TPR.G17586 Trifolium pratense HOM05D006418 ORTHO05D008063 1.3e-49 201.1 298 39.9
CiPaw.01G053600 Carya illinoinensis HOM05D006418 ORTHO05D008063 1.7e-49 200.7 308 39.6
Lj3g0006580 Lotus japonicus HOM05D006418 ORTHO05D008063 1.7e-49 200.7 298 40.6
Sp5g02280 Schrenkiella parvula HOM05D006418 ORTHO05D008063 2.2e-49 200.3 301 40.2
Medtr8g032700 Medicago truncatula HOM05D006418 ORTHO05D008063 4.9e-49 199.1 297 39.1
Sed0024588 Sechium edule HOM05D006418 ORTHO05D008063 6.4e-49 198.7 248 44.8
Prupe.2G154600 Prunus persica HOM05D006418 ORTHO05D008063 8.3e-49 198.4 258 43.4
Nitab4.5_0004550g0130 Nicotiana tabacum HOM05D006418 ORTHO05D008063 5.4e-48 195.7 322 39.1
unitig_22.g5367 Utricularia gibba HOM05D006418 ORTHO05D008063 1.2e-47 194.5 197 50.8
Cc02_g37660 Coffea canephora HOM05D006418 ORTHO05D008063 2.7e-47 193.4 184 52.7
SMO356G0133 Selaginella moellendorffii HOM05D006418 ORTHO05D008063 1.3e-46 191.0 314 38.2
SalBow3G2367 Salvia bowleyana HOM05D006418 ORTHO05D008063 3.0e-46 189.9 308 39.0
Gohir.A11G085000 Gossypium hirsutum HOM05D006418 ORTHO05D008063 4.3e-45 186.0 169 52.1
CiPaw.01G023800 Carya illinoinensis HOM05D006418 ORTHO05D008063 5.6e-45 185.7 310 38.1
MELO3C006151.2 Cucumis melo HOM05D006418 ORTHO05D008063 3.6e-44 183.0 351 36.8
Lsat_1_v5_gn_7_8501 Lactuca sativa HOM05D006418 ORTHO05D008063 1.1e-43 181.4 265 40.8
SGA_v2.0_scaffold95G28870 Striga asiatica HOM05D006418 ORTHO05D008063 1.1e-43 181.4 316 38.0
CDE01G0065 Ceratophyllum demersum HOM05D006418 ORTHO05D008063 6.4e-41 172.2 238 42.0
Thecc.01G368600 Theobroma cacao HOM05D006418 ORTHO05D008063 9.2e-40 168.3 255 38.8
Manes.01G262400 Manihot esculenta HOM05D006418 ORTHO05D008063 3.3e-37 159.8 263 38.0
AUR62004291 Chenopodium quinoa HOM05D006418 ORTHO05D008063 5.2e-35 152.5 224 42.4
Psat4g151800 Pisum sativum HOM05D006418 ORTHO05D008063 5.2e-35 152.5 261 37.5
Oeu024416.1 Olea europaea HOM05D006418 ORTHO05D008063 3.4e-34 149.8 275 34.2
Cfa024407 Carpinus fangiana HOM05D006418 ORTHO05D008063 7.5e-34 148.7 320 37.5
Atru.chr5.403 Acer truncatum HOM05D006418 ORTHO05D008063 1.7e-33 147.5 256 37.5
Pp3c1_6480 Physcomitrium patens HOM05D006418 ORTHO05D008063 2.2e-33 147.1 313 34.2
Ca_28970_v3 Cicer arietinum L. HOM05D006418 ORTHO05D008063 9.2e-24 115.2 292 30.1
QL08p050652 Quercus lobata HOM05D006418 ORTHO05D008063 3.5e-23 113.2 236 33.1
SEGI_14549 Sequoiadendron giganteum HOM05D006418 ORTHO05D008063 7.8e-23 112.1 186 38.2
Cpa.g.sc18.197 Carica papaya HOM05D006418 ORTHO05D008063 1.6e-20 104.4 233 33.9
MBI12_g25033_MAGBIO Magnolia biondii HOM05D006418 ORTHO05D008063 4.0e-19 99.8 119 45.4
Hma1.2p1_0033F.1_g020640 Hydrangea macrophylla HOM05D006418 ORTHO05D008063 9.9e-18 95.1 129 41.1
ATR0620G127 Amborella trichopoda HOM05D006418 ORTHO05D008063 7.6e-10 68.9 72 44.4
Sc26g0001060 Simmondsia chinensis HOM05D001335 ORTHO05D001184 1.7e-09 67.8 135 35.6
FAN10G0301 Fragaria x ananassa HOM05D006418 ORTHO05D008063 1.8e-06 57.8 68 44.1


User provided reference genes

Program Settings