Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PRCOL_00000090 Prasinoderma coloniale HOM05D004915 ORTHO05D006048 3.0e-174 615.1 322 100.0
Lj5C110T19 Lonicera japonica HOM05D004915 ORTHO05D006048 2.4e-43 180.3 286 38.5
PSO478G3309 Papaver somniferum HOM05D004915 ORTHO05D006048 6.0e-42 175.6 288 37.2
Pp3c2_33530 Physcomitrium patens HOM05D004915 ORTHO05D006048 2.3e-41 173.7 245 38.8
MCO14G534 Micromonas commoda HOM05D004915 ORTHO05D006048 3.9e-41 172.9 257 38.9
Solyc06g065310.3 Solanum lycopersicum HOM05D004915 ORTHO05D006048 6.6e-41 172.2 263 37.3
TAR622G0868 Trochodendron aralioides HOM05D004915 ORTHO05D006048 1.1e-40 171.4 283 36.0
Medtr1g111380 Medicago truncatula HOM05D004915 ORTHO05D006048 1.5e-40 171.0 286 36.4
Sopen06g023800 Solanum pennellii HOM05D004915 ORTHO05D006048 1.9e-40 170.6 262 37.4
Aa31LG2G4180 Aethionema arabicum HOM05D004915 ORTHO05D006048 2.5e-40 170.2 290 35.2
PGSC0003DMG400026111 Solanum tuberosum HOM05D004915 ORTHO05D006048 2.5e-40 170.2 248 37.9
A04p12400 Brassica napus HOM05D004915 ORTHO05D006048 3.3e-40 169.9 250 38.8
Glyma.09G236600 Glycine max HOM05D004915 ORTHO05D006048 3.3e-40 169.9 266 37.6
Psat3g200280 Pisum sativum HOM05D004915 ORTHO05D006048 3.3e-40 169.9 292 36.0
SGA_v2.0_scaffold17G08101 Striga asiatica HOM05D004915 ORTHO05D006048 5.6e-40 169.1 257 36.6
BolC4t26193H Brassica oleracea HOM05D004915 ORTHO05D006048 7.3e-40 168.7 250 38.8
CANSAT56G1541 Cannabis sativa HOM05D004915 ORTHO05D006048 7.3e-40 168.7 264 37.9
BraA06t26934Z Brassica rapa HOM05D004915 ORTHO05D006048 9.6e-40 168.3 287 36.2
CARHR152100 Cardamine hirsuta HOM05D004915 ORTHO05D006048 9.6e-40 168.3 273 36.6
Ca_02901_v3 Cicer arietinum L. HOM05D004915 ORTHO05D006048 9.6e-40 168.3 268 36.9
A06p40200 Brassica napus HOM05D004915 ORTHO05D006048 1.2e-39 167.9 269 37.2
BolC7t44312H Brassica oleracea HOM05D004915 ORTHO05D006048 1.2e-39 167.9 286 34.6
CAN.G199.5 Capsicum annuum HOM05D004915 ORTHO05D006048 1.2e-39 167.9 257 35.4
HanXRQChr09g0247201 Helianthus annuus HOM05D004915 ORTHO05D006048 1.2e-39 167.9 264 37.5
C04p46080 Brassica napus HOM05D004915 ORTHO05D006048 2.8e-39 166.8 250 38.4
Cc04_g16470 Coffea canephora HOM05D004915 ORTHO05D006048 2.8e-39 166.8 260 38.1
Nitab4.5_0000121g0120 Nicotiana tabacum HOM05D004915 ORTHO05D006048 2.8e-39 166.8 257 35.4
Atru.chr8.192 Acer truncatum HOM05D004915 ORTHO05D006048 3.6e-39 166.4 234 38.0
Cre01.g053750 Chlamydomonas reinhardtii HOM05D004915 ORTHO05D006048 3.6e-39 166.4 304 36.5
MELO3C001989.2 Cucumis melo HOM05D004915 ORTHO05D006048 3.6e-39 166.4 231 37.7
HanXRQChr08g0236601 Helianthus annuus HOM05D004915 ORTHO05D006048 3.6e-39 166.4 267 37.8
MD14G1201800 Malus domestica HOM05D004915 ORTHO05D006048 3.6e-39 166.4 297 34.3
QL10p017218 Quercus lobata HOM05D004915 ORTHO05D006048 3.6e-39 166.4 301 34.2
Carub.0005s0760 Capsella rubella HOM05D004915 ORTHO05D006048 4.7e-39 166.0 289 35.6
AUR62018412 Chenopodium quinoa HOM05D004915 ORTHO05D006048 6.2e-39 165.6 231 37.2
CsaV3_1G005570 Cucumis sativus L. HOM05D004915 ORTHO05D006048 6.2e-39 165.6 285 35.4
Potri.017G085100 Populus trichocarpa HOM05D004915 ORTHO05D006048 6.2e-39 165.6 234 40.6
TPR.G39201 Trifolium pratense HOM05D004915 ORTHO05D006048 6.2e-39 165.6 285 35.4
AL5G18870 Arabidopsis lyrata HOM05D004915 ORTHO05D006048 8.1e-39 165.2 289 34.9
CARHR262560 Cardamine hirsuta HOM05D004915 ORTHO05D006048 8.1e-39 165.2 251 37.5
Hma1.2p1_0060F.1_g033670 Hydrangea macrophylla HOM05D004915 ORTHO05D006048 8.1e-39 165.2 260 36.5
MD06G1194800 Malus domestica HOM05D004915 ORTHO05D006048 8.1e-39 165.2 301 34.2
Peaxi162Scf00241g00416 Petunia axillaris HOM05D004915 ORTHO05D006048 8.1e-39 165.2 266 35.7
TWI34G1631 Tripterygium wilfordii HOM05D004915 ORTHO05D006048 8.1e-39 165.2 284 35.9
HPP92_002574 Vanilla planifolia HOM05D004915 ORTHO05D006048 8.1e-39 165.2 274 36.5
HPP92_002576 Vanilla planifolia HOM05D004915 ORTHO05D006048 8.1e-39 165.2 274 36.5
Sp2g17640 Schrenkiella parvula HOM05D004915 ORTHO05D006048 1.1e-38 164.9 289 34.9
arahy.Tifrunner.gnm1.ann1.BYQL86 Arachis hypogaea HOM05D004915 ORTHO05D006048 1.4e-38 164.5 255 35.7
BcaC06g33662 Brassica carinata HOM05D004915 ORTHO05D006048 1.4e-38 164.5 286 34.3
C07p37910 Brassica napus HOM05D004915 ORTHO05D006048 1.4e-38 164.5 286 34.3
Aqoxy3G03429 Aquilegia oxysepala HOM05D004915 ORTHO05D006048 1.8e-38 164.1 249 37.8
AUR62021031 Chenopodium quinoa HOM05D004915 ORTHO05D006048 1.8e-38 164.1 236 39.0
Migut.L00264 Erythranthe guttata HOM05D004915 ORTHO05D006048 1.8e-38 164.1 253 36.0
Actinidia38781 Actinidia chinensis HOM05D004915 ORTHO05D006048 2.4e-38 163.7 251 37.1
Carub.0007s3626 Capsella rubella HOM05D004915 ORTHO05D006048 2.4e-38 163.7 249 36.1
TPR.G33578 Trifolium pratense HOM05D004915 ORTHO05D006048 2.4e-38 163.7 288 35.4
TAR374G0666 Trochodendron aralioides HOM05D004915 ORTHO05D006048 2.4e-38 163.7 251 38.2
COL.COLO4_22946 Corchorus olitorius HOM05D004915 ORTHO05D006048 3.1e-38 163.3 258 35.7
Aa31LG9G16420 Aethionema arabicum HOM05D004915 ORTHO05D006048 4.0e-38 162.9 292 34.2
ClCG04G012190 Citrullus lanatus HOM05D004915 ORTHO05D006048 4.0e-38 162.9 253 35.6
Thhalv10005292m.g Eutrema salsugineum HOM05D004915 ORTHO05D006048 4.0e-38 162.9 287 34.1
Oeu058311.1 Olea europaea HOM05D004915 ORTHO05D006048 4.0e-38 162.9 268 36.9
Eucgr.B00520 Eucalyptus grandis HOM05D004915 ORTHO05D006048 5.2e-38 162.5 259 37.1
Lsat_1_v5_gn_9_27040 Lactuca sativa HOM05D004915 ORTHO05D006048 6.9e-38 162.2 249 36.5
Manes.01G092400 Manihot esculenta HOM05D004915 ORTHO05D006048 6.9e-38 162.2 234 35.9
Cpa.g.sc179.53 Carica papaya HOM05D004915 ORTHO05D006048 8.9e-38 161.8 237 38.8
Medtr7g011040 Medicago truncatula HOM05D004915 ORTHO05D006048 8.9e-38 161.8 256 36.7
Phvul.008G037200 Phaseolus vulgaris HOM05D004915 ORTHO05D006048 8.9e-38 161.8 269 35.7
Os08g0435800 Oryza sativa ssp. japonica HOM05D004915 ORTHO05D006048 1.2e-37 161.4 262 37.0
MSTRG.15680 Avicennia marina HOM05D004915 ORTHO05D006048 1.5e-37 161.0 273 35.9
Ciclev10012474m.g Citrus clementina HOM05D004915 ORTHO05D006048 1.5e-37 161.0 250 36.8
Nn4g23203 Nelumbo nucifera HOM05D004915 ORTHO05D006048 1.5e-37 161.0 253 37.2
VMungo1383G0755 Vigna mungo HOM05D004915 ORTHO05D006048 1.5e-37 161.0 269 36.1
Cfa018930 Carpinus fangiana HOM05D004915 ORTHO05D006048 2.6e-37 160.2 290 35.5
ECA246G2050 Erigeron canadensis HOM05D004915 ORTHO05D006048 2.6e-37 160.2 270 37.0
BraA04t16903Z Brassica rapa HOM05D004915 ORTHO05D006048 3.4e-37 159.8 256 36.3
Sabra17G0075000 Salix brachista HOM05D004915 ORTHO05D006048 3.4e-37 159.8 232 39.7
CiPaw.11G045800 Carya illinoinensis HOM05D004915 ORTHO05D006048 4.4e-37 159.5 271 35.8
Actinidia38763 Actinidia chinensis HOM05D004915 ORTHO05D006048 5.8e-37 159.1 261 36.0
Prupe.5G195000 Prunus persica HOM05D004915 ORTHO05D006048 5.8e-37 159.1 241 36.5
Rhsim08G0070400 Rhododendron simsii HOM05D004915 ORTHO05D006048 5.8e-37 159.1 282 34.8
Zm00001eb211140 Zea mays HOM05D004915 ORTHO05D006048 5.8e-37 159.1 262 37.4
FAN03G1016 Fragaria x ananassa HOM05D004915 ORTHO05D006048 7.6e-37 158.7 250 36.8
Lj1g0024391 Lotus japonicus HOM05D004915 ORTHO05D006048 7.6e-37 158.7 272 36.4
Sp7g02320 Schrenkiella parvula HOM05D004915 ORTHO05D006048 7.6e-37 158.7 254 35.4
Thecc.03G090400 Theobroma cacao HOM05D004915 ORTHO05D006048 7.6e-37 158.7 289 33.9
GSVIVG01007990001 Vitis vinifera HOM05D004915 ORTHO05D006048 7.6e-37 158.7 288 36.1
FAN13G2234 Fragaria x ananassa HOM05D004915 ORTHO05D006048 9.9e-37 158.3 247 36.4
Thhalv10027886m.g Eutrema salsugineum HOM05D004915 ORTHO05D006048 1.3e-36 157.9 235 35.7
FvH4_7g07490 Fragaria vesca HOM05D004915 ORTHO05D006048 1.7e-36 157.5 237 37.6
FAN10G0297 Fragaria x ananassa HOM05D004915 ORTHO05D006048 2.2e-36 157.1 250 36.8
CSS0019190 Camellia sinensis var. sinensis HOM05D004915 ORTHO05D006048 3.8e-36 156.4 230 37.4
RcHm_v2.0_Chr7g0181591 Rosa chinensis HOM05D004915 ORTHO05D006048 3.8e-36 156.4 261 35.6
Lalb_Chr23g0265041 Lupinus albus HOM05D004915 ORTHO05D006048 4.9e-36 156.0 290 35.2
Mapoly0106s0015 Marchantia polymorpha HOM05D004915 ORTHO05D006048 8.4e-36 155.2 230 38.7
SEGI_18610 Sequoiadendron giganteum HOM05D004915 ORTHO05D006048 1.1e-35 154.8 232 37.9
Oeu037787.1 Olea europaea HOM05D004915 ORTHO05D006048 1.4e-35 154.5 272 35.7
Hund02640 Selenicereus undatus HOM05D004915 ORTHO05D006048 2.4e-35 153.7 286 34.3
Dinv37673 Davidia involucrata HOM05D004915 ORTHO05D006048 3.2e-35 153.3 234 36.8
MBI05_g33757_MAGBIO Magnolia biondii HOM05D004915 ORTHO05D006048 4.2e-35 152.9 251 34.7
EL10Ac3g07299 Beta vulgaris HOM05D004915 ORTHO05D006048 7.1e-35 152.1 299 33.1
Duzib205G1074 Durio zibethinus HOM05D004915 ORTHO05D006048 7.1e-35 152.1 289 32.5
FvH4_5g14790 Fragaria vesca HOM05D004915 ORTHO05D006048 9.3e-35 151.8 237 36.7
FAN18G3490 Fragaria x ananassa HOM05D004915 ORTHO05D006048 9.3e-35 151.8 234 35.9
Haze_07314 Corylus avellana HOM05D004915 ORTHO05D006048 1.2e-34 151.4 306 33.3
FAN04G1144 Fragaria x ananassa HOM05D004915 ORTHO05D006048 1.2e-34 151.4 237 36.7
FAN08G1694 Fragaria x ananassa HOM05D004915 ORTHO05D006048 2.1e-34 150.6 237 36.3
Sed0011950 Sechium edule HOM05D004915 ORTHO05D006048 1.3e-33 147.9 214 38.3
AagrBONN_evm.TU.Sc2ySwM_344.3958 Anthoceros agrestis HOM05D004915 ORTHO05D006048 6.6e-33 145.6 213 37.1
AT3G29010 Arabidopsis thaliana HOM05D004915 ORTHO05D006048 6.6e-33 145.6 217 37.8
PGR083G1377 Punica granatum HOM05D004915 ORTHO05D006048 1.1e-32 144.8 271 35.4
MBI05_g35466_MAGBIO Magnolia biondii HOM05D004915 ORTHO05D006048 3.3e-32 143.3 265 32.8
Sc04g0002730 Simmondsia chinensis HOM05D004915 ORTHO05D006048 5.6e-32 142.5 207 38.6
SMO119G0486 Selaginella moellendorffii HOM05D004915 ORTHO05D006048 7.3e-32 142.1 247 34.4
DCAR_015957 Daucus carota HOM05D004915 ORTHO05D006048 1.3e-31 141.4 219 38.4
Peaxi162Scf00106g00016 Petunia axillaris HOM05D004915 ORTHO05D006048 1.3e-31 141.4 293 32.1
Gohir.D07G070500 Gossypium hirsutum HOM05D004915 ORTHO05D006048 2.8e-31 140.2 187 37.4
Gorai.001G074400 Gossypium raimondii HOM05D004915 ORTHO05D006048 3.6e-31 139.8 187 37.4
THA.LOC104825807 Tarenaya hassleriana HOM05D004915 ORTHO05D006048 8.1e-31 138.7 242 35.1
PGR031G1409 Punica granatum HOM05D004915 ORTHO05D006048 1.8e-30 137.5 207 38.2
Lj4A111T68 Lonicera japonica HOM05D004915 ORTHO05D006048 2.4e-30 137.1 291 30.6
CSS0012692 Camellia sinensis var. sinensis HOM05D004915 ORTHO05D006048 4.0e-30 136.3 230 34.8
ATR0626G227 Amborella trichopoda HOM05D004915 ORTHO05D006048 1.5e-29 134.4 199 38.2
AagrBONN_evm.TU.Sc2ySwM_362.689 Anthoceros agrestis HOM05D004915 ORTHO05D006048 4.2e-27 126.3 213 34.3
BcaB06g27359 Brassica carinata HOM05D004915 ORTHO05D006048 1.3e-25 121.3 250 32.8
AagrBONN_evm.TU.Sc2ySwM_362.690 Anthoceros agrestis HOM05D004915 ORTHO05D006048 2.5e-24 117.1 203 34.0
QL06p014871 Quercus lobata HOM05D004915 ORTHO05D006048 3.3e-24 116.7 147 42.2
CSS0012742 Camellia sinensis var. sinensis HOM05D004915 ORTHO05D006048 7.6e-21 105.5 162 38.3
CBR_g58409 Chara braunii HOM05D004915 ORTHO05D006048 7.6e-21 105.5 145 40.0
vmacro05688 Vaccinium macrocarpon HOM05D004915 ORTHO05D006048 1.9e-19 100.9 77 50.6
SMO164G0178 Selaginella moellendorffii HOM05D004915 ORTHO05D006048 6.0e-18 95.9 229 29.7
Gohir.A07G066000 Gossypium hirsutum HOM05D004915 ORTHO05D006048 2.3e-17 94.0 87 44.8
unitig_60.g25520 Utricularia gibba HOM05D004915 ORTHO05D006048 9.6e-16 88.6 228 27.6
Actinidia26226 Actinidia chinensis HOM05D004915 ORTHO05D006048 2.1e-15 87.4 234 27.4
DCAR_026059 Daucus carota HOM05D004915 ORTHO05D006048 1.1e-14 85.1 124 37.1
HanXRQChr14g0437411 Helianthus annuus HOM05D004915 ORTHO05D006048 4.0e-14 83.2 138 38.4
HPP92_002578 Vanilla planifolia HOM05D006076 ORTHO05D007871 5.3e-14 82.8 163 34.4
HanXRQChr13g0408591 Helianthus annuus HOM05D004915 ORTHO05D006048 6.9e-14 82.4 131 36.6
Nitab4.5_0005170g0010 Nicotiana tabacum HOM05D004915 ORTHO05D006048 3.2e-11 73.6 125 36.8
Nitab4.5_0004528g0010 Nicotiana tabacum HOM05D004915 ORTHO05D006048 5.5e-11 72.8 127 29.9
FAN06G0706 Fragaria x ananassa HOM05D004915 ORTHO05D006048 3.3e-08 63.5 67 38.8


User provided reference genes

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