Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PRCOL_00000087 Prasinoderma coloniale HOM05D003082 ORTHO05D003497 9.4e-156 553.5 287 100.0
Cre02.g091193 Chlamydomonas reinhardtii HOM05D007737 ORTHO05D009754 3.3e-15 86.7 86 44.2
PGSC0003DMG400015652 Solanum tuberosum HOM05D007737 ORTHO05D009754 1.8e-13 80.9 80 46.2
Solyc06g051160.4 Solanum lycopersicum HOM05D007737 ORTHO05D009754 2.3e-13 80.5 80 46.2
Pp3c4_20470 Physcomitrium patens HOM05D003082 ORTHO05D003497 5.2e-13 79.3 211 28.0
Os02g0122300 Oryza sativa ssp. japonica HOM05D003082 ORTHO05D003497 5.8e-12 75.9 232 31.0
Actinidia30967 Actinidia chinensis HOM05D007737 ORTHO05D009754 7.5e-12 75.5 72 45.8
SGA_v2.0_scaffold77G25232 Striga asiatica HOM05D007737 ORTHO05D009754 9.8e-12 75.1 72 45.8
Migut.N01704 Erythranthe guttata HOM05D007737 ORTHO05D009754 1.3e-11 74.7 72 47.2
Actinidia01599 Actinidia chinensis HOM05D003082 ORTHO05D003497 1.7e-11 74.3 191 30.9
Gohir.D04G072800 Gossypium hirsutum HOM05D007737 ORTHO05D009754 1.7e-11 74.3 80 43.8
Gorai.012G081800 Gossypium raimondii HOM05D007737 ORTHO05D009754 1.7e-11 74.3 80 43.8
DCAR_019930 Daucus carota HOM05D003082 ORTHO05D003497 2.2e-11 73.9 214 28.5
RcHm_v2.0_Chr0c20g0500251 Rosa chinensis HOM05D007737 ORTHO05D009754 4.9e-11 72.8 72 44.4
Manes.12G126400 Manihot esculenta HOM05D007737 ORTHO05D009754 8.3e-11 72.0 78 42.3
Gohir.A05G333700 Gossypium hirsutum HOM05D007737 ORTHO05D009754 1.1e-10 71.6 72 45.8
Actinidia05801 Actinidia chinensis HOM05D007737 ORTHO05D009754 1.4e-10 71.2 68 44.1
Oeu029042.1 Olea europaea HOM05D007737 ORTHO05D009754 1.9e-10 70.9 77 44.2
SalBow4G2387 Salvia bowleyana HOM05D007737 ORTHO05D009754 1.9e-10 70.9 72 44.4
MBI03_g35442_MAGBIO Magnolia biondii HOM05D003082 ORTHO05D003497 2.4e-10 70.5 215 34.0
Sabra14G0139900 Salix brachista HOM05D007737 ORTHO05D009754 2.4e-10 70.5 72 45.8
arahy.Tifrunner.gnm1.ann1.W7Y30R Arachis hypogaea HOM05D003082 ORTHO05D003497 3.2e-10 70.1 130 31.5
HanXRQChr14g0432091 Helianthus annuus HOM05D003082 ORTHO05D003497 3.2e-10 70.1 228 31.1
CDE07G0767 Ceratophyllum demersum HOM05D003082 ORTHO05D003497 4.1e-10 69.7 220 28.6
Pp3c13_8920 Physcomitrium patens HOM05D003082 ORTHO05D003497 4.1e-10 69.7 222 27.5
CiPaw.06G015400 Carya illinoinensis HOM05D003082 ORTHO05D003497 5.4e-10 69.3 215 26.5
Dinv20511 Davidia involucrata HOM05D003082 ORTHO05D003497 9.2e-10 68.6 196 29.6
Dinv20531 Davidia involucrata HOM05D003082 ORTHO05D003497 9.2e-10 68.6 196 29.6
Nitab4.5_0003465g0050 Nicotiana tabacum HOM05D003082 ORTHO05D003497 9.2e-10 68.6 183 30.6
CiPaw.05G244300 Carya illinoinensis HOM05D003082 ORTHO05D003497 1.6e-09 67.8 192 29.2
arahy.Tifrunner.gnm1.ann1.TD12MZ Arachis hypogaea HOM05D003082 ORTHO05D003497 2.0e-09 67.4 130 34.6
Peaxi162Scf00588g01011 Petunia axillaris HOM05D003082 ORTHO05D003497 2.0e-09 67.4 214 25.7
AagrBONN_evm.TU.Sc2ySwM_344.418 Anthoceros agrestis HOM05D007737 ORTHO05D009754 2.7e-09 67.0 70 41.4
Glyma.09G165600 Glycine max HOM05D003082 ORTHO05D003497 2.7e-09 67.0 221 28.5
Potri.004G082200 Populus trichocarpa HOM05D003082 ORTHO05D003497 2.7e-09 67.0 192 30.2
Actinidia17178 Actinidia chinensis HOM05D003082 ORTHO05D003497 3.5e-09 66.6 146 35.6
Cc02_g25850 Coffea canephora HOM05D007737 ORTHO05D009754 3.5e-09 66.6 72 41.7
Lalb_Chr14g0370291 Lupinus albus HOM05D003082 ORTHO05D003497 3.5e-09 66.6 205 27.3
Zm00001eb208430 Zea mays HOM05D003082 ORTHO05D003497 4.6e-09 66.2 230 30.0
MSTRG.13183 Avicennia marina HOM05D003082 ORTHO05D003497 6.0e-09 65.9 200 31.5
Lalb_Chr22g0353931 Lupinus albus HOM05D003082 ORTHO05D003497 6.0e-09 65.9 207 26.6
Glyma.16G215500 Glycine max HOM05D003082 ORTHO05D003497 7.8e-09 65.5 218 27.1
THA.LOC104823823 Tarenaya hassleriana HOM05D003082 ORTHO05D003497 7.8e-09 65.5 199 27.6
Zm00001eb230510 Zea mays HOM05D003082 ORTHO05D003497 7.8e-09 65.5 222 28.4
Gohir.D02G056500 Gossypium hirsutum HOM05D003082 ORTHO05D003497 1.0e-08 65.1 194 30.9
Hma1.2p1_0601F.1_g187210 Hydrangea macrophylla HOM05D007737 ORTHO05D009754 1.0e-08 65.1 72 44.4
QL01p029277 Quercus lobata HOM05D003082 ORTHO05D003497 1.0e-08 65.1 198 28.8
THA.LOC104822082 Tarenaya hassleriana HOM05D003082 ORTHO05D003497 1.0e-08 65.1 196 28.1
Gohir.A02G051600 Gossypium hirsutum HOM05D003082 ORTHO05D003497 1.3e-08 64.7 194 30.4
HanXRQChr06g0168511 Helianthus annuus HOM05D007737 ORTHO05D009754 1.3e-08 64.7 72 44.4
Peaxi162Scf00299g00531 Petunia axillaris HOM05D003082 ORTHO05D003497 1.3e-08 64.7 205 26.8
BcaB06g27069 Brassica carinata HOM05D003082 ORTHO05D003497 1.7e-08 64.3 198 30.3
BraA07t30937Z Brassica rapa HOM05D003082 ORTHO05D003497 1.7e-08 64.3 227 27.3
ECA238G3678 Erigeron canadensis HOM05D003082 ORTHO05D003497 1.7e-08 64.3 190 26.3
Gorai.005G062400 Gossypium raimondii HOM05D003082 ORTHO05D003497 1.7e-08 64.3 194 30.9
TWI60G0785 Tripterygium wilfordii HOM05D003082 ORTHO05D003497 1.7e-08 64.3 182 29.7
MELO3C025123.2 Cucumis melo HOM05D003082 ORTHO05D003497 2.3e-08 63.9 195 29.2
Psat0s4349g0040 Pisum sativum HOM05D007737 ORTHO05D009754 2.3e-08 63.9 81 40.7
Ca_11830_v3 Cicer arietinum L. HOM05D003082 ORTHO05D003497 3.0e-08 63.5 205 27.3
Hma1.2p1_0127F.1_g059670 Hydrangea macrophylla HOM05D003082 ORTHO05D003497 3.0e-08 63.5 182 28.0
Nitab4.5_0000190g0170 Nicotiana tabacum HOM05D003082 ORTHO05D003497 3.0e-08 63.5 195 30.3
TWI15G0329 Tripterygium wilfordii HOM05D003082 ORTHO05D003497 3.0e-08 63.5 184 29.3
Atru.chr1.1952 Acer truncatum HOM05D003082 ORTHO05D003497 3.9e-08 63.2 211 27.0
CSS0043531 Camellia sinensis var. sinensis HOM05D003082 ORTHO05D003497 3.9e-08 63.2 219 26.5
Dinv06240 Davidia involucrata HOM05D003082 ORTHO05D003497 3.9e-08 63.2 218 30.3
Migut.H01515 Erythranthe guttata HOM05D003082 ORTHO05D003497 3.9e-08 63.2 196 28.1
Sed0014317 Sechium edule HOM05D003082 ORTHO05D003497 3.9e-08 63.2 194 29.4
TWI74G0632 Tripterygium wilfordii HOM05D003082 ORTHO05D003497 3.9e-08 63.2 205 26.8
Aqoxy3G02868 Aquilegia oxysepala HOM05D003082 ORTHO05D003497 5.0e-08 62.8 184 32.1
CANSAT01G2338 Cannabis sativa HOM05D003082 ORTHO05D003497 5.0e-08 62.8 216 25.5
COL.COLO4_34689 Corchorus olitorius HOM05D003082 ORTHO05D003497 5.0e-08 62.8 187 28.9
Oeu053940.1 Olea europaea HOM05D003082 ORTHO05D003497 5.0e-08 62.8 183 30.6
Potri.017G138300 Populus trichocarpa HOM05D003082 ORTHO05D003497 5.0e-08 62.8 193 31.6
A07p33090 Brassica napus HOM05D003082 ORTHO05D003497 6.6e-08 62.4 226 26.5
DCAR_009639 Daucus carota HOM05D003082 ORTHO05D003497 6.6e-08 62.4 129 27.1
MD06G1026500 Malus domestica HOM05D003082 ORTHO05D003497 6.6e-08 62.4 135 27.4
Medtr6g478160 Medicago truncatula HOM05D003082 ORTHO05D003497 6.6e-08 62.4 215 30.7
ATR0743G023 Amborella trichopoda HOM05D003082 ORTHO05D003497 8.6e-08 62.0 183 29.0
arahy.Tifrunner.gnm1.ann1.J0MG2W Arachis hypogaea HOM05D007737 ORTHO05D009754 8.6e-08 62.0 67 41.8
A02p13440 Brassica napus HOM05D003082 ORTHO05D003497 8.6e-08 62.0 153 30.7
BraA02t06402Z Brassica rapa HOM05D003082 ORTHO05D003497 8.6e-08 62.0 153 30.7
Nitab4.5_0012269g0010 Nicotiana tabacum HOM05D003082 ORTHO05D003497 8.6e-08 62.0 183 29.0
Psat1g121400 Pisum sativum HOM05D003082 ORTHO05D003497 8.6e-08 62.0 214 29.9
Ah.03g147370 Amaranthus hybridus HOM05D003082 ORTHO05D003497 1.1e-07 61.6 218 26.6
Haze_00671 Corylus avellana HOM05D003082 ORTHO05D003497 1.1e-07 61.6 201 25.9
CsaV3_5G024250 Cucumis sativus L. HOM05D003082 ORTHO05D003497 1.1e-07 61.6 194 29.9
Nitab4.5_0003574g0100 Nicotiana tabacum HOM05D003082 ORTHO05D003497 1.1e-07 61.6 182 29.7
Psat0s2829g0120 Pisum sativum HOM05D007737 ORTHO05D009754 1.1e-07 61.6 72 43.1
AL7G46180 Arabidopsis lyrata HOM05D003082 ORTHO05D003497 1.5e-07 61.2 196 30.6
Phvul.004G141100 Phaseolus vulgaris HOM05D003082 ORTHO05D003497 1.5e-07 61.2 218 25.7
Sp7g04760 Schrenkiella parvula HOM05D003082 ORTHO05D003497 1.5e-07 61.2 196 28.6
SGA_v2.0_scaffold7G03956 Striga asiatica HOM05D003082 ORTHO05D003497 1.5e-07 61.2 149 32.9
unitig_46.g18626 Utricularia gibba HOM05D003082 ORTHO05D003497 1.5e-07 61.2 192 31.8
BcaB05g24148 Brassica carinata HOM05D003082 ORTHO05D003497 1.9e-07 60.8 152 30.9
Sp5g21120 Schrenkiella parvula HOM05D003082 ORTHO05D003497 1.9e-07 60.8 213 25.8
PGSC0003DMG400022359 Solanum tuberosum HOM05D003082 ORTHO05D003497 1.9e-07 60.8 189 28.6
AT1G66070 Arabidopsis thaliana HOM05D003082 ORTHO05D003497 2.5e-07 60.5 106 34.9
BolC6t39029H Brassica oleracea HOM05D003082 ORTHO05D003497 2.5e-07 60.5 222 26.1
MSTRG.7294 Avicennia marina HOM05D003082 ORTHO05D003497 3.3e-07 60.1 218 29.8
BcaC02g08888 Brassica carinata HOM05D003082 ORTHO05D003497 3.3e-07 60.1 148 35.8
PSO170G2980 Papaver somniferum HOM05D003082 ORTHO05D003497 3.3e-07 60.1 187 30.5
BcaB06g27692 Brassica carinata HOM05D003082 ORTHO05D003497 4.3e-07 59.7 198 32.3
Migut.M01208 Erythranthe guttata HOM05D003082 ORTHO05D003497 4.3e-07 59.7 183 30.1
Lj3A832G16 Lonicera japonica HOM05D003082 ORTHO05D003497 4.3e-07 59.7 184 30.4
Oeu038230.1 Olea europaea HOM05D003082 ORTHO05D003497 4.3e-07 59.7 151 31.8
AT5G37475 Arabidopsis thaliana HOM05D003082 ORTHO05D003497 5.6e-07 59.3 196 29.6
Ciclev10002394m.g Citrus clementina HOM05D003082 ORTHO05D003497 5.6e-07 59.3 218 26.6
Lj6P692T22 Lonicera japonica HOM05D003082 ORTHO05D003497 5.6e-07 59.3 141 31.9
PSO384G2055 Papaver somniferum HOM05D003082 ORTHO05D003497 5.6e-07 59.3 190 31.6
Cc02_g12480 Coffea canephora HOM05D003082 ORTHO05D003497 7.3e-07 58.9 222 26.1
RcHm_v2.0_Chr7g0211981 Rosa chinensis HOM05D003082 ORTHO05D003497 7.3e-07 58.9 216 25.0
TPR.G19886 Trifolium pratense HOM05D003082 ORTHO05D003497 7.3e-07 58.9 213 29.6
TAR622G0065 Trochodendron aralioides HOM05D003082 ORTHO05D003497 7.3e-07 58.9 215 25.6
Aqoxy5G04053 Aquilegia oxysepala HOM05D003082 ORTHO05D003497 9.5e-07 58.5 194 28.9
BcaC03g14729 Brassica carinata HOM05D003082 ORTHO05D003497 9.5e-07 58.5 220 25.5
BolC4t25997H Brassica oleracea HOM05D003082 ORTHO05D003497 9.5e-07 58.5 131 34.4
Thhalv10019428m.g Eutrema salsugineum HOM05D003082 ORTHO05D003497 9.5e-07 58.5 135 33.3
Lj2g0006781 Lotus japonicus HOM05D003082 ORTHO05D003497 9.5e-07 58.5 220 27.3
PSO063G3459 Papaver somniferum HOM05D003082 ORTHO05D003497 9.5e-07 58.5 183 27.9
PSO135G0099 Papaver somniferum HOM05D003082 ORTHO05D003497 9.5e-07 58.5 193 32.6
Prupe.5G027300 Prunus persica HOM05D003082 ORTHO05D003497 9.5e-07 58.5 205 25.9
arahy.Tifrunner.gnm1.ann1.4BAK6K Arachis hypogaea HOM05D004879 ORTHO05D009754 1.2e-06 58.2 52 46.2
AUR62007100 Chenopodium quinoa HOM05D003082 ORTHO05D003497 1.2e-06 58.2 135 30.4
ClCG01G008760 Citrullus lanatus HOM05D003082 ORTHO05D003497 1.2e-06 58.2 181 28.2
Gorai.011G194600 Gossypium raimondii HOM05D003082 ORTHO05D003497 1.2e-06 58.2 195 27.7
MCO15G044 Micromonas commoda HOM05D003082 ORTHO05D003497 1.2e-06 58.2 186 32.3
GSVIVG01000052001 Vitis vinifera HOM05D003082 ORTHO05D003497 1.2e-06 58.2 195 30.3
Aa31LG9G17590 Aethionema arabicum HOM05D000001 ORTHO05D000003 1.6e-06 57.8 192 29.7
BolC4t26528H Brassica oleracea HOM05D003082 ORTHO05D003497 1.6e-06 57.8 139 36.0
DCAR_029388 Daucus carota HOM05D007737 ORTHO05D009754 1.6e-06 57.8 77 37.7
MD16G1279500 Malus domestica HOM05D003082 ORTHO05D003497 1.6e-06 57.8 106 32.1
Manes.06G016100 Manihot esculenta HOM05D003082 ORTHO05D003497 1.6e-06 57.8 196 29.6
VMungo0464G0847 Vigna mungo HOM05D003082 ORTHO05D003497 1.6e-06 57.8 217 26.7
C04p49430 Brassica napus HOM05D003082 ORTHO05D003497 2.1e-06 57.4 136 33.8
Carub.0002s1202 Capsella rubella HOM05D003082 ORTHO05D003497 2.1e-06 57.4 214 29.4
Haze_14301 Corylus avellana HOM05D003082 ORTHO05D003497 2.1e-06 57.4 134 31.3
PGR119G2515 Punica granatum HOM05D007737 ORTHO05D009754 2.1e-06 57.4 64 40.6
MSTRG.15930 Avicennia marina HOM05D003082 ORTHO05D003497 2.8e-06 57.0 196 29.6
BcaC02g09568 Brassica carinata HOM05D003082 ORTHO05D003497 2.8e-06 57.0 131 35.1
A04p15210 Brassica napus HOM05D003082 ORTHO05D003497 2.8e-06 57.0 140 33.6
C04p44240 Brassica napus HOM05D003082 ORTHO05D003497 2.8e-06 57.0 131 35.1
Duzib052G0144 Durio zibethinus HOM05D003082 ORTHO05D003497 2.8e-06 57.0 192 28.1
Hma1.2p1_0331F.1_g127550 Hydrangea macrophylla HOM05D003082 ORTHO05D003497 2.8e-06 57.0 205 24.9
Solyc02g079060.3 Solanum lycopersicum HOM05D003082 ORTHO05D003497 2.8e-06 57.0 191 29.3
TWI23G0770 Tripterygium wilfordii HOM05D007737 ORTHO05D009754 2.8e-06 57.0 80 36.2
FAN04G2030 Fragaria x ananassa HOM05D003082 ORTHO05D003497 3.6e-06 56.6 216 24.1
FAN13G0663 Fragaria x ananassa HOM05D003082 ORTHO05D003497 3.6e-06 56.6 150 27.3
FAN13G1153 Fragaria x ananassa HOM05D003082 ORTHO05D003497 3.6e-06 56.6 150 27.3
Hund04328 Selenicereus undatus HOM05D003082 ORTHO05D003497 3.6e-06 56.6 206 26.7
Atru.chr9.1638 Acer truncatum HOM05D003082 ORTHO05D003497 4.7e-06 56.2 205 26.3
BcaB03g15297 Brassica carinata HOM05D003082 ORTHO05D003497 4.7e-06 56.2 213 26.8
BolC2t08308H Brassica oleracea HOM05D003082 ORTHO05D003497 4.7e-06 56.2 220 26.4
CARHR215550 Cardamine hirsuta HOM05D003082 ORTHO05D003497 4.7e-06 56.2 199 26.1
CBR_g41674 Chara braunii HOM05D003082 ORTHO05D003497 4.7e-06 56.2 197 29.9
Mapoly0099s0043 Marchantia polymorpha HOM05D007737 ORTHO05D009754 4.7e-06 56.2 75 36.0
PGR042G1487 Punica granatum HOM05D003082 ORTHO05D003497 4.7e-06 56.2 222 25.7
AL2G23680 Arabidopsis lyrata HOM05D003082 ORTHO05D003497 6.2e-06 55.8 186 28.5
Sabra17G0112800 Salix brachista HOM05D003082 ORTHO05D003497 6.2e-06 55.8 97 39.2
Sed0024856 Sechium edule HOM05D003082 ORTHO05D003497 6.2e-06 55.8 182 27.5
SGA_v2.0_scaffold114G31974 Striga asiatica HOM05D003082 ORTHO05D003497 6.2e-06 55.8 106 32.1
BcaC08g46082 Brassica carinata HOM05D003082 ORTHO05D003497 8.0e-06 55.5 226 25.7
AUR62019963 Chenopodium quinoa HOM05D003082 ORTHO05D003497 8.0e-06 55.5 156 29.5
Mapoly0038s0048 Marchantia polymorpha HOM05D003082 ORTHO05D003497 8.0e-06 55.5 117 29.9
Nn7g36916 Nelumbo nucifera HOM05D003082 ORTHO05D003497 8.0e-06 55.5 197 29.4
Pp3c17_5190 Physcomitrium patens HOM05D007737 ORTHO05D009754 8.0e-06 55.5 78 34.6
TWI81G0860 Tripterygium wilfordii HOM05D003082 ORTHO05D003497 8.0e-06 55.5 191 26.7


User provided reference genes

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