Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PRCOL_00000009 Prasinoderma coloniale HOM05D005239 ORTHO05D006698 6.3e-197 690.6 368 100.0
AagrBONN_evm.TU.Sc2ySwM_369.187 Anthoceros agrestis HOM05D005239 ORTHO05D006698 6.8e-74 282.0 339 48.7
Mapoly0029s0153 Marchantia polymorpha HOM05D005239 ORTHO05D006698 8.9e-74 281.6 343 48.1
Cre12.g516350 Chlamydomonas reinhardtii HOM05D005239 ORTHO05D006698 2.2e-72 276.9 297 52.5
CBR_g3821 Chara braunii HOM05D005239 ORTHO05D006698 9.2e-71 271.6 290 53.1
Sc20g0003020 Simmondsia chinensis HOM05D005239 ORTHO05D006698 2.3e-69 266.9 343 45.2
DCAR_029633 Daucus carota HOM05D005239 ORTHO05D006698 1.1e-68 264.6 352 45.7
ATR1153G024 Amborella trichopoda HOM05D005239 ORTHO05D006698 5.6e-68 262.3 348 45.4
MCO03G363 Micromonas commoda HOM05D005239 ORTHO05D006698 1.8e-66 257.3 283 51.9
ECA234G1231 Erigeron canadensis HOM05D005239 ORTHO05D006698 2.3e-66 256.9 343 46.1
Dinv43567 Davidia involucrata HOM05D005239 ORTHO05D006698 4.0e-66 256.1 343 44.6
FvH4_2g12720 Fragaria vesca HOM05D005239 ORTHO05D006698 5.2e-66 255.8 346 43.6
HanXRQChr17g0562471 Helianthus annuus HOM05D005239 ORTHO05D006698 5.2e-66 255.8 345 43.8
Cfa011001 Carpinus fangiana HOM05D002067 ORTHO05D001060 6.8e-66 255.4 351 43.3
CiPaw.13G020400 Carya illinoinensis HOM05D005239 ORTHO05D006698 6.8e-66 255.4 351 43.9
Cc02_g25930 Coffea canephora HOM05D005239 ORTHO05D006698 6.8e-66 255.4 350 44.3
VMungo0720G0476 Vigna mungo HOM05D005239 ORTHO05D006698 8.9e-66 255.0 352 44.0
Nitab4.5_0004264g0020 Nicotiana tabacum HOM05D005239 ORTHO05D006698 1.2e-65 254.6 343 43.4
Os01g0527700 Oryza sativa ssp. japonica HOM05D005239 ORTHO05D006698 1.2e-65 254.6 348 45.7
Hma1.2p1_0601F.1_g187220 Hydrangea macrophylla HOM05D005239 ORTHO05D006698 2.0e-65 253.8 350 44.0
TAR629G3002 Trochodendron aralioides HOM05D005239 ORTHO05D006698 2.6e-65 253.4 348 45.4
GSVIVG01018386001 Vitis vinifera HOM05D005239 ORTHO05D006698 2.6e-65 253.4 346 43.9
Peaxi162Scf01144g00013 Petunia axillaris HOM05D005239 ORTHO05D006698 3.4e-65 253.1 343 43.1
unitig_26.g9718 Utricularia gibba HOM05D005239 ORTHO05D006698 3.4e-65 253.1 376 42.3
CANSAT54G1536 Cannabis sativa HOM05D005239 ORTHO05D006698 4.4e-65 252.7 343 44.6
TWI59G0212 Tripterygium wilfordii HOM05D005239 ORTHO05D006698 4.4e-65 252.7 346 42.8
TAR636G2805 Trochodendron aralioides HOM05D005239 ORTHO05D006698 5.8e-65 252.3 344 43.9
AUR62035533 Chenopodium quinoa HOM05D005239 ORTHO05D006698 7.5e-65 251.9 350 43.1
Actinidia21601 Actinidia chinensis HOM05D005239 ORTHO05D006698 1.3e-64 251.1 343 44.0
AUR62041654 Chenopodium quinoa HOM05D005239 ORTHO05D006698 1.3e-64 251.1 353 42.8
Zm00001eb402310 Zea mays HOM05D005239 ORTHO05D006698 1.3e-64 251.1 348 45.1
SGA_v2.0_scaffold69G23296 Striga asiatica HOM05D005239 ORTHO05D006698 1.7e-64 250.8 339 44.5
Dinv44000 Davidia involucrata HOM05D005239 ORTHO05D001060 2.2e-64 250.4 350 43.7
Solyc01g080860.3 Solanum lycopersicum HOM05D005239 ORTHO05D006698 2.2e-64 250.4 350 43.1
Sopen01g032450 Solanum pennellii HOM05D005239 ORTHO05D006698 2.2e-64 250.4 350 43.1
CDE04G1215 Ceratophyllum demersum HOM05D005239 ORTHO05D006698 2.9e-64 250.0 344 42.7
Sed0010493 Sechium edule HOM05D005239 ORTHO05D006698 2.9e-64 250.0 345 43.2
vmacro21097 Vaccinium macrocarpon HOM05D005239 ORTHO05D006698 2.9e-64 250.0 347 44.7
Sed0027364 Sechium edule HOM05D005239 ORTHO05D006698 4.9e-64 249.2 345 42.9
SGA_v2.0_scaffold52G19274 Striga asiatica HOM05D005239 ORTHO05D006698 4.9e-64 249.2 343 44.0
CAN.G1480.7 Capsicum annuum HOM05D005239 ORTHO05D006698 6.4e-64 248.8 345 42.9
Aqoxy3G02472 Aquilegia oxysepala HOM05D005239 ORTHO05D006698 8.3e-64 248.4 342 43.9
ClCG05G002730 Citrullus lanatus HOM05D005239 ORTHO05D006698 1.1e-63 248.1 346 42.5
Glyma.20G243400 Glycine max HOM05D005239 ORTHO05D006698 1.1e-63 248.1 346 43.6
MD08G1235300 Malus domestica HOM05D005239 ORTHO05D006698 1.1e-63 248.1 344 42.4
EL10Ac4g08842 Beta vulgaris HOM05D005239 ORTHO05D006698 1.4e-63 247.7 345 43.2
CSS0007844 Camellia sinensis var. sinensis HOM05D005239 ORTHO05D006698 1.4e-63 247.7 349 43.3
RcHm_v2.0_Chr6g0273481 Rosa chinensis HOM05D005239 ORTHO05D006698 1.4e-63 247.7 343 43.4
Prupe.1G571600 Prunus persica HOM05D005239 ORTHO05D006698 1.9e-63 247.3 344 42.4
TWI14G1099 Tripterygium wilfordii HOM05D005239 ORTHO05D006698 1.9e-63 247.3 345 43.2
Phvul.007G006700 Phaseolus vulgaris HOM05D005239 ORTHO05D006698 2.4e-63 246.9 343 42.0
HPP92_001886 Vanilla planifolia HOM05D005239 ORTHO05D006698 2.4e-63 246.9 345 45.5
Ah.06g191320 Amaranthus hybridus HOM05D005239 ORTHO05D006698 4.1e-63 246.1 346 42.8
FAN27G2303 Fragaria x ananassa HOM05D005239 ORTHO05D006698 4.1e-63 246.1 358 42.2
Zm00001eb005400 Zea mays HOM05D005239 ORTHO05D006698 4.1e-63 246.1 337 45.4
CsaV3_3G010220 Cucumis sativus L. HOM05D005239 ORTHO05D006698 5.4e-63 245.7 340 42.4
QL04p024849 Quercus lobata HOM05D005239 ORTHO05D006698 5.4e-63 245.7 347 43.2
Sabra02G0168400 Salix brachista HOM05D005239 ORTHO05D006698 5.4e-63 245.7 346 43.9
MELO3C006242.2 Cucumis melo HOM05D005239 ORTHO05D006698 7.0e-63 245.4 340 42.4
Lj5g0010357 Lotus japonicus HOM05D005239 ORTHO05D006698 1.6e-62 244.2 341 44.3
Medtr1g116110 Medicago truncatula HOM05D005239 ORTHO05D006698 1.6e-62 244.2 343 44.3
FAN15G3107 Fragaria x ananassa HOM05D005239 ORTHO05D006698 2.0e-62 243.8 358 41.6
Manes.05G061000 Manihot esculenta HOM05D005239 ORTHO05D006698 3.5e-62 243.0 291 46.4
Gohir.A09G201600 Gossypium hirsutum HOM05D005239 ORTHO05D006698 4.6e-62 242.7 347 43.2
Lj9A547G68 Lonicera japonica HOM05D005239 ORTHO05D006698 4.6e-62 242.7 341 44.6
Aa31LG1G26110 Aethionema arabicum HOM05D005239 ORTHO05D006698 6.0e-62 242.3 344 42.4
arahy.Tifrunner.gnm1.ann1.X9CQTL Arachis hypogaea HOM05D005239 ORTHO05D006698 6.0e-62 242.3 339 43.4
Gorai.006G218900 Gossypium raimondii HOM05D005239 ORTHO05D006698 6.0e-62 242.3 347 43.2
arahy.Tifrunner.gnm1.ann1.XN1C7B Arachis hypogaea HOM05D005239 ORTHO05D006698 1.3e-61 241.1 339 43.1
Potri.002G216100 Populus trichocarpa HOM05D005239 ORTHO05D006698 1.3e-61 241.1 350 43.7
TPR.G10426 Trifolium pratense HOM05D005239 ORTHO05D006698 1.7e-61 240.7 347 43.8
Ca_11344_v3 Cicer arietinum L. HOM05D005239 ORTHO05D006698 2.3e-61 240.4 343 43.1
BcaC02g07098 Brassica carinata HOM05D005239 ORTHO05D006698 3.0e-61 240.0 347 41.5
BolC4t28610H Brassica oleracea HOM05D005239 ORTHO05D006698 3.0e-61 240.0 347 41.5
PGSC0003DMG400001672 Solanum tuberosum HOM05D005239 ORTHO05D006698 3.0e-61 240.0 340 42.4
Atru.chr9.1540 Acer truncatum HOM05D005239 ORTHO05D006698 3.9e-61 239.6 353 42.5
Psat6g232360 Pisum sativum HOM05D005239 ORTHO05D006698 3.9e-61 239.6 349 42.4
Gohir.D09G195500 Gossypium hirsutum HOM05D005239 ORTHO05D006698 5.0e-61 239.2 347 42.9
Lalb_Chr02g0143811 Lupinus albus HOM05D005239 ORTHO05D006698 6.6e-61 238.8 339 43.1
BraA04t18797Z Brassica rapa HOM05D005239 ORTHO05D006698 8.6e-61 238.4 346 42.8
Thhalv10001456m.g Eutrema salsugineum HOM05D005239 ORTHO05D006698 8.6e-61 238.4 347 42.1
COL.COLO4_20862 Corchorus olitorius HOM05D005239 ORTHO05D006698 1.1e-60 238.0 347 42.1
SMO364G0841 Selaginella moellendorffii HOM05D005239 ORTHO05D006698 1.1e-60 238.0 343 43.4
Ciclev10020370m.g Citrus clementina HOM05D005239 ORTHO05D006698 1.5e-60 237.7 348 41.7
Sp4g26610 Schrenkiella parvula HOM05D005239 ORTHO05D006698 1.5e-60 237.7 346 41.9
PGR119G0794 Punica granatum HOM05D005239 ORTHO05D006698 1.9e-60 237.3 352 41.5
Eucgr.H02846 Eucalyptus grandis HOM05D005239 ORTHO05D006698 7.3e-60 235.3 350 42.9
Nn6g33642 Nelumbo nucifera HOM05D005239 ORTHO05D006698 7.3e-60 235.3 352 42.9
Thecc.04G216000 Theobroma cacao HOM05D005239 ORTHO05D006698 7.3e-60 235.3 348 42.5
Pp3c14_19200 Physcomitrium patens HOM05D005239 ORTHO05D006698 9.5e-60 235.0 262 48.5
SEGI_24425 Sequoiadendron giganteum HOM05D005239 ORTHO05D006698 9.5e-60 235.0 282 46.1
BcaB06g29384 Brassica carinata HOM05D005239 ORTHO05D006698 2.1e-59 233.8 347 42.4
Oeu002884.1 Olea europaea HOM05D005239 ORTHO05D006698 2.1e-59 233.8 334 43.1
C04p71050 Brassica napus HOM05D000073 ORTHO05D006698 2.8e-59 233.4 342 40.6
Carub.0004s2708 Capsella rubella HOM05D005239 ORTHO05D006698 2.8e-59 233.4 346 41.6
PSO302G0170 Papaver somniferum HOM05D005239 ORTHO05D006698 2.8e-59 233.4 344 43.6
THA.LOC104802511 Tarenaya hassleriana HOM05D005239 ORTHO05D006698 2.8e-59 233.4 351 40.2
Rhsim01G0145300 Rhododendron simsii HOM05D005239 ORTHO05D006698 6.2e-59 232.3 382 39.8
PSO170G2576 Papaver somniferum HOM05D005239 ORTHO05D006698 1.1e-58 231.5 350 43.7
AT2G44520 Arabidopsis thaliana HOM05D005239 ORTHO05D006698 1.8e-58 230.7 347 41.2
C04p05410 Brassica napus HOM05D005239 ORTHO05D006698 1.8e-58 230.7 348 42.0
BolC4t22181H Brassica oleracea HOM05D005239 ORTHO05D006698 1.8e-58 230.7 348 42.0
THA.LOC104817164 Tarenaya hassleriana HOM05D005239 ORTHO05D006698 2.3e-58 230.3 348 40.5
AL4G43540 Arabidopsis lyrata HOM05D005239 ORTHO05D006698 5.2e-58 229.2 346 41.3
Haze_02934 Corylus avellana HOM05D005239 ORTHO05D006698 8.9e-58 228.4 340 42.4
A04p33360 Brassica napus HOM05D000073 ORTHO05D006698 1.2e-57 228.0 330 42.7
Duzib151G1142 Durio zibethinus HOM05D005239 ORTHO05D006698 2.6e-57 226.9 346 41.9
BcaC02g12301 Brassica carinata HOM05D005239 ORTHO05D006698 1.3e-56 224.6 344 41.3
Cpa.g.sc20.28 Carica papaya HOM05D005239 ORTHO05D006698 2.2e-56 223.8 223 52.5
BcaNung07053 Brassica carinata HOM05D005239 ORTHO05D006698 4.1e-55 219.5 346 40.5
Actinidia33289 Actinidia chinensis HOM05D005239 ORTHO05D006698 1.7e-53 214.2 221 50.2
Lsat_1_v5_gn_4_39040 Lactuca sativa HOM05D005239 ORTHO05D006698 1.7e-53 214.2 341 40.5
Migut.B01467 Erythranthe guttata HOM05D005239 ORTHO05D006698 5.1e-53 212.6 214 50.9
MD15G1426600 Malus domestica HOM05D005239 ORTHO05D006698 1.8e-50 204.1 303 41.3
Nitab4.5_0001476g0120 Nicotiana tabacum HOM05D005239 ORTHO05D006698 3.2e-47 193.4 343 37.6
PSO357G0304 Papaver somniferum HOM05D005239 ORTHO05D006698 2.5e-44 183.7 199 49.2
Hma1.2p1_0601F.1_g187230 Hydrangea macrophylla HOM05D005239 ORTHO05D006698 3.3e-44 183.3 189 48.7
CDE12G0888 Ceratophyllum demersum HOM05D005239 ORTHO05D006698 7.6e-41 172.2 238 43.7
Duzib212G0896 Durio zibethinus HOM05D005239 ORTHO05D006698 3.8e-40 169.9 350 36.9
CARHR139710 Cardamine hirsuta HOM05D005239 ORTHO05D006698 1.1e-36 158.3 240 40.4
A05p04670 Brassica napus HOM05D005239 ORTHO05D006698 7.3e-36 155.6 153 52.3
BraA05t19443Z Brassica rapa HOM05D005239 ORTHO05D006698 7.3e-36 155.6 153 52.3
CAN.G74.42 Capsicum annuum HOM05D005239 ORTHO05D006698 1.4e-34 151.4 287 34.5
Cfa027222 Carpinus fangiana HOM05D005239 ORTHO05D006698 2.4e-34 150.6 293 37.9
Oeu037395.1 Olea europaea HOM05D005239 ORTHO05D006698 2.0e-33 147.5 194 47.4
Aqoxy5G02001 Aquilegia oxysepala HOM05D005239 ORTHO05D006698 7.8e-30 135.6 162 46.3
MD15G1426900 Malus domestica HOM05D005239 ORTHO05D006698 8.1e-19 99.0 187 35.8
BcaB02g08828 Brassica carinata HOM05D005239 ORTHO05D006698 6.9e-18 95.9 239 34.3
FAN24G3432 Fragaria x ananassa HOM05D005239 ORTHO05D006698 9.9e-17 92.0 103 46.6
SHI13675 Sapria himalayana HOM05D005239 ORTHO05D006698 1.4e-15 88.2 203 34.0
Glyma.10G293300 Glycine max HOM05D005239 ORTHO05D006698 7.9e-14 82.4 75 48.0
RcHm_v2.0_Chr6g0271171 Rosa chinensis HOM05D005239 ORTHO05D006698 4.3e-12 76.6 71 49.3
PGR004G1759 Punica granatum HOM05D005239 ORTHO05D006698 8.2e-11 72.4 121 38.8
RcHm_v2.0_Chr7g0200821 Rosa chinensis HOM05D005239 ORTHO05D006698 2.4e-10 70.9 71 46.5
PSO081G0040 Papaver somniferum HOM05D005239 ORTHO05D006698 4.0e-10 70.1 80 46.2
TPR.G37315 Trifolium pratense HOM05D005239 ORTHO05D006698 7.9e-06 55.8 82 41.5


User provided reference genes

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