Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGSC0003DMG403029595 Solanum tuberosum HOM05D004561 ORTHO05D005315 5.1e-162 574.3 283 100.0
Solyc08g074360.3 Solanum lycopersicum HOM05D004561 ORTHO05D005315 1.5e-129 466.5 238 95.0
PGSC0003DMG400009224 Solanum tuberosum HOM05D004561 ORTHO05D005315 7.4e-129 464.2 238 94.1
Sopen08g023020 Solanum pennellii HOM05D004561 ORTHO05D005315 6.3e-128 461.1 238 95.0
Solyc11g017400.2 Solanum lycopersicum HOM05D004561 ORTHO05D005315 4.5e-126 454.9 238 92.0
Nitab4.5_0000422g0080 Nicotiana tabacum HOM05D004561 ORTHO05D005315 1.7e-125 453.0 238 91.2
CAN.G370.25 Capsicum annuum HOM05D004561 ORTHO05D005315 3.8e-125 451.8 238 91.2
Peaxi162Scf00310g00711 Petunia axillaris HOM05D004561 ORTHO05D005315 1.6e-115 419.9 233 88.0
Peaxi162Scf00152g00158 Petunia axillaris HOM05D004561 ORTHO05D005315 2.3e-114 416.0 241 83.8
CSS0045511 Camellia sinensis var. sinensis HOM05D004561 ORTHO05D005315 4.7e-99 365.2 238 70.2
Dinv14864 Davidia involucrata HOM05D004561 ORTHO05D005315 4.8e-96 355.1 238 70.2
HanXRQChr15g0480201 Helianthus annuus HOM05D004561 ORTHO05D005315 1.0e-93 347.4 239 69.0
Hma1.2p1_0018F.1_g012650 Hydrangea macrophylla HOM05D004561 ORTHO05D005315 1.3e-93 347.1 238 68.5
MSTRG.11225 Avicennia marina HOM05D004561 ORTHO05D005315 5.0e-93 345.1 264 65.5
GSVIVG01028605001 Vitis vinifera HOM05D004561 ORTHO05D005315 5.0e-93 345.1 238 67.6
QL09p040874 Quercus lobata HOM05D004561 ORTHO05D005315 7.2e-92 341.3 238 67.2
MSTRG.22847 Avicennia marina HOM05D004561 ORTHO05D005315 2.8e-91 339.3 238 67.2
CAN.G1530.1 Capsicum annuum HOM05D004561 ORTHO05D005315 3.6e-91 339.0 185 88.6
Ciclev10002226m.g Citrus clementina HOM05D004561 ORTHO05D005315 1.4e-90 337.0 238 66.4
ClCG06G015750 Citrullus lanatus HOM05D000113 ORTHO05D002571 3.0e-90 335.9 238 67.2
Lsat_1_v5_gn_7_30581 Lactuca sativa HOM05D004561 ORTHO05D005315 1.5e-89 333.6 242 64.5
Potri.012G041700 Populus trichocarpa HOM05D004561 ORTHO05D005315 2.0e-89 333.2 264 60.6
Sed0015683 Sechium edule HOM05D004561 ORTHO05D005315 2.6e-89 332.8 239 65.7
CiPaw.15G149700 Carya illinoinensis HOM05D004561 ORTHO05D005315 9.8e-89 330.9 238 63.4
Prupe.5G069900 Prunus persica HOM05D004561 ORTHO05D005315 1.3e-88 330.5 241 67.2
Sabra12G0028700 Salix brachista HOM05D004561 ORTHO05D005315 1.3e-88 330.5 265 58.9
Thecc.01G124300 Theobroma cacao HOM05D004561 ORTHO05D005315 4.9e-88 328.6 238 65.5
SGA_v2.0_scaffold37G14646 Striga asiatica HOM05D004561 ORTHO05D005315 1.4e-87 327.0 235 65.1
Migut.I00621 Erythranthe guttata HOM05D004561 ORTHO05D005315 3.1e-87 325.9 238 64.7
Rhsim06G0237000 Rhododendron simsii HOM05D004561 ORTHO05D005315 5.4e-87 325.1 283 56.9
Lj1A1185G61 Lonicera japonica HOM05D004561 ORTHO05D005315 1.6e-86 323.6 277 60.3
Atru.chr13.142 Acer truncatum HOM05D004561 ORTHO05D005315 2.0e-86 323.2 239 64.9
COL.COLO4_13996 Corchorus olitorius HOM05D004561 ORTHO05D005315 2.0e-86 323.2 238 64.7
MELO3C017214.2 Cucumis melo HOM05D004561 ORTHO05D005315 2.0e-86 323.2 238 65.5
SalBow3G1851 Salvia bowleyana HOM05D004561 ORTHO05D005315 3.5e-86 322.4 252 62.3
CsaV3_1G002780 Cucumis sativus L. HOM05D004561 ORTHO05D005315 1.0e-85 320.9 238 65.1
Sopen11g009350 Solanum pennellii HOM05D004561 ORTHO05D005315 1.0e-85 320.9 161 93.2
Cc03_g07430 Coffea canephora HOM05D004561 ORTHO05D005315 3.8e-85 318.9 247 64.8
Nn5g27375 Nelumbo nucifera HOM05D004561 ORTHO05D005315 5.0e-85 318.5 239 61.5
TAR628G1415 Trochodendron aralioides HOM05D004561 ORTHO05D005315 1.1e-84 317.4 241 64.3
Manes.08G062966 Manihot esculenta HOM05D004561 ORTHO05D005315 1.5e-84 317.0 238 63.0
AL5G39820 Arabidopsis lyrata HOM05D004561 ORTHO05D005315 2.5e-84 316.2 239 62.3
TWI15G0666 Tripterygium wilfordii HOM05D004561 ORTHO05D005315 2.5e-84 316.2 238 62.6
Lj4g0004659 Lotus japonicus HOM05D004561 ORTHO05D005315 3.3e-84 315.8 238 63.0
THA.LOC104822320 Tarenaya hassleriana HOM05D004561 ORTHO05D005315 4.3e-84 315.5 239 62.8
AT3G58130 Arabidopsis thaliana HOM05D004561 ORTHO05D005315 1.2e-83 313.9 238 62.2
Glyma.05G126500 Glycine max HOM05D004561 ORTHO05D005315 1.2e-83 313.9 260 57.7
Psat1g047920 Pisum sativum HOM05D004561 ORTHO05D005315 1.2e-83 313.9 238 62.2
TWI81G0190 Tripterygium wilfordii HOM05D004561 ORTHO05D005315 1.6e-83 313.5 238 62.2
Glyma.08G081300 Glycine max HOM05D004561 ORTHO05D005315 4.7e-83 312.0 240 61.7
Oeu031248.3 Olea europaea HOM05D004561 ORTHO05D005315 4.7e-83 312.0 261 60.5
Sc18g0002470 Simmondsia chinensis HOM05D004561 ORTHO05D005315 4.7e-83 312.0 238 61.8
FAN04G2378 Fragaria x ananassa HOM05D004561 ORTHO05D005315 6.1e-83 311.6 241 60.6
FAN08G3218 Fragaria x ananassa HOM05D004561 ORTHO05D005315 6.1e-83 311.6 241 60.6
FvH4_7g18930 Fragaria vesca HOM05D004561 ORTHO05D005315 8.0e-83 311.2 241 60.6
FAN06G2746 Fragaria x ananassa HOM05D004561 ORTHO05D005315 8.0e-83 311.2 241 60.6
FAN06G3856 Fragaria x ananassa HOM05D004561 ORTHO05D005315 8.0e-83 311.2 241 60.6
ECA233G0879 Erigeron canadensis HOM05D004561 ORTHO05D005315 1.0e-82 310.8 238 63.9
RcHm_v2.0_Chr7g0203331 Rosa chinensis HOM05D004561 ORTHO05D005315 1.8e-82 310.1 241 63.1
Eucgr.B03172 Eucalyptus grandis HOM05D004561 ORTHO05D005315 2.3e-82 309.7 266 56.8
Medtr4g094538 Medicago truncatula HOM05D004561 ORTHO05D005315 4.0e-82 308.9 238 60.1
Lalb_Chr12g0208781 Lupinus albus HOM05D004561 ORTHO05D005315 6.8e-82 308.1 238 60.5
Gohir.A05G386400 Gossypium hirsutum HOM05D004561 ORTHO05D005315 1.5e-81 307.0 238 61.3
Sp5g04590 Schrenkiella parvula HOM05D004561 ORTHO05D005315 2.0e-81 306.6 239 60.7
BcaB02g07548 Brassica carinata HOM05D004561 ORTHO05D005315 2.6e-81 306.2 261 57.1
FvH4_5g18940 Fragaria vesca HOM05D004561 ORTHO05D005315 2.6e-81 306.2 241 60.2
MD16G1270300 Malus domestica HOM05D004561 ORTHO05D005315 2.6e-81 306.2 202 70.3
TPR.G30372 Trifolium pratense HOM05D004561 ORTHO05D005315 2.6e-81 306.2 238 61.3
Gorai.012G033300 Gossypium raimondii HOM05D004561 ORTHO05D005315 3.4e-81 305.8 238 61.3
BraA07t30043Z Brassica rapa HOM05D004561 ORTHO05D005315 5.8e-81 305.1 242 60.3
VMungo0251G0557 Vigna mungo HOM05D004561 ORTHO05D005315 9.8e-81 304.3 199 66.8
CARHR168490 Cardamine hirsuta HOM05D004561 ORTHO05D005315 1.7e-80 303.5 239 60.3
AUR62010959 Chenopodium quinoa HOM05D004561 ORTHO05D005315 1.7e-80 303.5 237 61.2
Gohir.D04G023500 Gossypium hirsutum HOM05D004561 ORTHO05D005315 1.7e-80 303.5 238 60.9
vmacro18667 Vaccinium macrocarpon HOM05D004561 ORTHO05D005315 1.7e-80 303.5 305 52.8
Thhalv10002077m.g Eutrema salsugineum HOM05D004561 ORTHO05D005315 2.9e-80 302.8 255 58.4
AT2G27340 Arabidopsis thaliana HOM05D004561 ORTHO05D005315 8.3e-80 301.2 235 61.7
A07p23920 Brassica napus HOM05D004561 ORTHO05D005315 8.3e-80 301.2 238 60.5
Aqoxy6G01699 Aquilegia oxysepala HOM05D004561 ORTHO05D005315 2.4e-79 299.7 238 56.7
PSO210G6857 Papaver somniferum HOM05D004561 ORTHO05D005315 4.1e-79 298.9 255 56.9
AUR62007426 Chenopodium quinoa HOM05D004561 ORTHO05D005315 5.4e-79 298.5 237 59.9
Hund26218 Selenicereus undatus HOM05D004561 ORTHO05D005315 1.6e-78 297.0 214 63.6
BolC6t37673H Brassica oleracea HOM05D004561 ORTHO05D005315 1.0e-77 294.3 238 59.7
Carub.0005s2498 Capsella rubella HOM05D004561 ORTHO05D005315 1.0e-77 294.3 239 58.6
C06p25150 Brassica napus HOM05D004561 ORTHO05D005315 5.6e-76 288.5 280 52.9
Thhalv10002036m.g Eutrema salsugineum HOM05D004561 ORTHO05D005315 6.2e-75 285.0 254 55.9
EL10Ac8g18446 Beta vulgaris HOM05D004561 ORTHO05D005315 1.8e-74 283.5 235 58.7
FAN13G2292 Fragaria x ananassa HOM05D004561 ORTHO05D005315 1.8e-74 283.5 188 66.5
FAN18G3337 Fragaria x ananassa HOM05D004561 ORTHO05D005315 1.8e-74 283.5 188 66.5
Phvul.002G198500 Phaseolus vulgaris HOM05D004561 ORTHO05D005315 5.8e-73 278.5 181 67.4
AUR62021469 Chenopodium quinoa HOM05D004561 ORTHO05D005315 4.9e-72 275.4 213 61.5
unitig_744.g24647 Utricularia gibba HOM05D004561 ORTHO05D005315 4.9e-72 275.4 253 56.1
Lj6g0005186 Lotus japonicus HOM05D004561 ORTHO05D005315 1.9e-71 273.5 219 58.4
BcaC08g44900 Brassica carinata HOM05D004561 ORTHO05D005315 2.4e-71 273.1 238 55.9
Nitab4.5_0000560g0110 Nicotiana tabacum HOM05D004561 ORTHO05D005315 2.4e-71 273.1 151 87.4
ATR0661G441 Amborella trichopoda HOM05D004561 ORTHO05D005315 1.2e-70 270.8 240 56.2
DCAR_002722 Daucus carota HOM05D004561 ORTHO05D005315 3.3e-68 262.7 190 64.2
SalBow1G5912 Salvia bowleyana HOM05D004561 ORTHO05D005315 5.6e-68 261.9 181 67.4
CDE04G2633 Ceratophyllum demersum HOM05D004561 ORTHO05D005315 4.7e-67 258.8 197 58.9
Zm00001eb433850 Zea mays HOM05D004561 ORTHO05D005315 1.2e-65 254.2 240 52.1
C08p33660 Brassica napus HOM05D004561 ORTHO05D005315 1.3e-64 250.8 238 51.7
Os04g0678800 Oryza sativa ssp. japonica HOM05D004561 ORTHO05D005315 2.9e-64 249.6 240 51.7
Sopen08g022960 Solanum pennellii HOM05D004561 ORTHO05D005315 6.4e-64 248.4 130 95.4
Aa31LG10G12840 Aethionema arabicum HOM05D004561 ORTHO05D005315 3.2e-63 246.1 283 48.1
BcaC07g40276 Brassica carinata HOM05D004561 ORTHO05D005315 2.1e-59 233.4 206 53.9
vmacro21453 Vaccinium macrocarpon HOM05D004561 ORTHO05D005315 2.8e-59 233.0 196 59.7
SHI05351 Sapria himalayana HOM05D004561 ORTHO05D005315 4.4e-57 225.7 242 48.8
RcHm_v2.0_Chr7g0203411 Rosa chinensis HOM05D004561 ORTHO05D005315 1.4e-55 220.7 204 52.9
arahy.Tifrunner.gnm1.ann1.AX2CN5 Arachis hypogaea HOM05D004561 ORTHO05D005315 1.3e-53 214.2 244 48.4
PSO761G0502 Papaver somniferum HOM05D004561 ORTHO05D005315 5.1e-53 212.2 176 60.2
FAN18G2677 Fragaria x ananassa HOM05D004561 ORTHO05D005315 9.6e-52 208.0 146 63.0
HPP92_027560 Vanilla planifolia HOM05D004561 ORTHO05D005315 2.4e-50 203.4 191 51.3
BolC8t50963H Brassica oleracea HOM05D004561 ORTHO05D005315 3.1e-50 203.0 185 52.4
arahy.Tifrunner.gnm1.ann1.3X42ZC Arachis hypogaea HOM05D004561 ORTHO05D005315 9.0e-50 201.4 173 57.8
A09p50910 Brassica napus HOM05D004561 ORTHO05D005315 5.8e-49 198.7 204 50.5
Mapoly0029s0047 Marchantia polymorpha HOM05D004561 ORTHO05D005315 3.8e-48 196.1 247 44.9
AagrBONN_evm.TU.Sc2ySwM_368.3407 Anthoceros agrestis HOM05D004561 ORTHO05D005315 1.4e-47 194.1 255 42.0
Zm00001eb066050 Zea mays HOM05D004561 ORTHO05D005315 3.2e-47 193.0 187 51.9
CiPaw.16G098200 Carya illinoinensis HOM05D004561 ORTHO05D005315 7.8e-46 188.3 149 61.1
Pp3c13_19470 Physcomitrium patens HOM05D004561 ORTHO05D005315 7.8e-46 188.3 193 46.1
Haze_18936 Corylus avellana HOM05D004561 ORTHO05D005315 1.0e-45 188.0 166 57.2
AUR62002652 Chenopodium quinoa HOM05D004561 ORTHO05D005315 9.6e-44 181.4 223 45.3
ECA236G3170 Erigeron canadensis HOM05D004561 ORTHO05D005315 3.6e-43 179.5 122 64.8
BcaC07g40185 Brassica carinata HOM05D004561 ORTHO05D005315 4.0e-42 176.0 216 44.9
Cpa.g.sc437.1 Carica papaya HOM05D004561 ORTHO05D005315 2.2e-40 170.2 144 56.9
Hund02231 Selenicereus undatus HOM05D004561 ORTHO05D005315 3.2e-39 166.4 200 45.5
Carub.0008s0419 Capsella rubella HOM05D004561 ORTHO05D005315 7.9e-38 161.8 126 60.3
Carub.0339s0001 Capsella rubella HOM05D004561 ORTHO05D005315 5.1e-37 159.1 122 59.8
Sopen05g006540 Solanum pennellii HOM05D004561 ORTHO05D005315 2.8e-35 153.3 129 64.3
Nitab4.5_0013603g0010 Nicotiana tabacum HOM05D004561 ORTHO05D005315 6.2e-35 152.1 81 88.9
CSS0036958 Camellia sinensis var. sinensis HOM05D004561 ORTHO05D005315 7.6e-33 145.2 86 75.6
Hund26251 Selenicereus undatus HOM05D004561 ORTHO05D005315 7.6e-33 145.2 116 58.6
CSS0005948 Camellia sinensis var. sinensis HOM05D004561 ORTHO05D005315 4.9e-32 142.5 86 74.4
CSS0005045 Camellia sinensis var. sinensis HOM05D004561 ORTHO05D005315 6.4e-32 142.1 86 74.4
SalBow1G4548 Salvia bowleyana HOM05D004561 ORTHO05D005315 8.4e-32 141.7 152 48.7
CSS0006634 Camellia sinensis var. sinensis HOM05D004561 ORTHO05D005315 1.1e-31 141.4 86 73.3
SalBow1G7315 Salvia bowleyana HOM05D004561 ORTHO05D005315 9.3e-31 138.3 240 36.7
MCO09G807 Micromonas commoda HOM05D004561 ORTHO05D005315 6.0e-30 135.6 201 38.3
MD06G1059000 Malus domestica HOM05D004561 ORTHO05D005315 8.7e-29 131.7 95 61.1
CBR_g12600 Chara braunii HOM05D005240 ORTHO05D006471 1.8e-26 124.0 378 27.8
Cre06.g300100 Chlamydomonas reinhardtii HOM05D004561 ORTHO05D005315 2.0e-25 120.6 200 32.5
PRCOL_00001899 Prasinoderma coloniale HOM05D004561 ORTHO05D005315 2.5e-23 113.6 235 32.8
Solyc05g010730.3 Solanum lycopersicum HOM05D004561 ORTHO05D005315 7.1e-23 112.1 53 92.5
SalBow1G4039 Salvia bowleyana HOM05D004561 ORTHO05D005315 3.0e-21 106.7 67 65.7
SalBow1G5331 Salvia bowleyana HOM05D004561 ORTHO05D005315 3.9e-21 106.3 67 68.7
SalBow1G6765 Salvia bowleyana HOM05D004561 ORTHO05D005315 6.7e-21 105.5 81 63.0
SalBow1G2796 Salvia bowleyana HOM05D004561 ORTHO05D005315 5.7e-20 102.4 67 64.2
arahy.Tifrunner.gnm1.ann1.Y05SLV Arachis hypogaea HOM05D004561 ORTHO05D005315 1.6e-19 100.9 77 61.0
RcHm_v2.0_Chr7g0204241 Rosa chinensis HOM05D004561 ORTHO05D005315 8.2e-19 98.6 90 55.6
RcHm_v2.0_Chr7g0204201 Rosa chinensis HOM05D004561 ORTHO05D005315 5.0e-16 89.4 82 54.9
Cpa.g.c32558.1 Carica papaya HOM05D004561 ORTHO05D005315 2.1e-14 84.0 63 58.7
MBI08_g32523_MAGBIO Magnolia biondii HOM05D004561 ORTHO05D005315 4.3e-12 76.3 56 55.4
SalBow1G0427 Salvia bowleyana HOM05D006885 ORTHO05D008606 2.2e-11 73.9 59 57.6
SalBow1G4445 Salvia bowleyana HOM05D025598 ORTHO05D005315 4.8e-11 72.8 43 74.4
SEGI_12631 Sequoiadendron giganteum HOM05D004561 ORTHO05D005315 3.1e-10 70.1 69 44.9
SHI05337 Sapria himalayana HOM05D004561 ORTHO05D005315 1.2e-09 68.2 141 34.0
Cc05_g02560 Coffea canephora HOM05D004561 ORTHO05D005315 2.2e-08 63.9 66 53.0
FvH4_5g18980 Fragaria vesca HOM05D004561 ORTHO05D005315 6.5e-08 62.4 48 58.3
Ca_17309_v3 Cicer arietinum L. HOM05D002967 ORTHO05D003281 3.2e-07 60.1 60 48.3
SHI05350 Sapria himalayana HOM05D004561 ORTHO05D005315 2.7e-06 57.0 147 29.9


User provided reference genes

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