Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGSC0003DMG403025742 Solanum tuberosum HOM05D006229 ORTHO05D007190 6.8e-105 384.0 198 100.0
Sopen01g049230 Solanum pennellii HOM05D006229 ORTHO05D007190 1.2e-93 346.7 192 94.8
Solyc01g106950.3 Solanum lycopersicum HOM05D006229 ORTHO05D007190 1.0e-92 343.6 192 94.3
Peaxi162Scf00016g02933 Petunia axillaris HOM05D006229 ORTHO05D007190 3.6e-74 282.0 201 78.6
Nitab4.5_0002040g0030 Nicotiana tabacum HOM05D006229 ORTHO05D007190 1.4e-73 280.0 188 81.4
Nitab4.5_0011076g0030 Nicotiana tabacum HOM05D006229 ORTHO05D007190 9.0e-73 277.3 187 81.3
Dinv15812 Davidia involucrata HOM05D006229 ORTHO05D007190 4.5e-48 195.3 196 55.6
Actinidia00366 Actinidia chinensis HOM05D006229 ORTHO05D007190 1.2e-45 187.2 194 54.1
CSS0000082 Camellia sinensis var. sinensis HOM05D006229 ORTHO05D007190 1.6e-45 186.8 195 54.9
CSS0031624 Camellia sinensis var. sinensis HOM05D006229 ORTHO05D007190 6.1e-45 184.9 195 54.4
GSVIVG01037817001 Vitis vinifera HOM05D006229 ORTHO05D007190 1.0e-44 184.1 199 52.8
Oeu013795.1 Olea europaea HOM05D006229 ORTHO05D007190 1.4e-44 183.7 197 53.8
vmacro01958 Vaccinium macrocarpon HOM05D006229 ORTHO05D007190 1.7e-42 176.8 199 52.3
Cfa004667 Carpinus fangiana HOM05D006229 ORTHO05D007190 1.1e-41 174.1 190 52.1
Haze_10264 Corylus avellana HOM05D006229 ORTHO05D007190 1.8e-41 173.3 197 51.3
Actinidia27991 Actinidia chinensis HOM05D006229 ORTHO05D007190 6.9e-41 171.4 197 50.8
Thecc.02G118000 Theobroma cacao HOM05D006229 ORTHO05D007190 6.9e-41 171.4 190 50.5
Potri.001G292800 Populus trichocarpa HOM05D006229 ORTHO05D007190 9.1e-41 171.0 175 54.3
TWI59G1401 Tripterygium wilfordii HOM05D006229 ORTHO05D007190 2.6e-40 169.5 197 50.3
TPR.G8306 Trifolium pratense HOM05D006229 ORTHO05D007190 4.5e-40 168.7 196 50.0
Migut.B00486 Erythranthe guttata HOM05D006229 ORTHO05D007190 7.7e-40 167.9 186 55.4
Rhsim11G0152600 Rhododendron simsii HOM05D006229 ORTHO05D007190 3.8e-39 165.6 200 50.5
RhsimUnG0124300 Rhododendron simsii HOM05D006229 ORTHO05D007190 3.8e-39 165.6 200 50.5
Cc02_g19910 Coffea canephora HOM05D006229 ORTHO05D007190 8.5e-39 164.5 196 50.0
MSTRG.16677 Avicennia marina HOM05D006229 ORTHO05D007190 1.1e-38 164.1 188 50.0
Potri.009G087100 Populus trichocarpa HOM05D006229 ORTHO05D007190 1.1e-38 164.1 176 52.8
Ciclev10027970m.g Citrus clementina HOM05D006229 ORTHO05D007190 1.4e-38 163.7 198 49.0
COL.COLO4_32503 Corchorus olitorius HOM05D006229 ORTHO05D007190 5.5e-38 161.8 190 48.4
CANSAT25G2732 Cannabis sativa HOM05D006229 ORTHO05D007190 1.2e-37 160.6 176 55.1
FAN15G0250 Fragaria x ananassa HOM05D006229 ORTHO05D007190 1.2e-37 160.6 193 50.8
FAN20G1794 Fragaria x ananassa HOM05D006229 ORTHO05D007190 2.1e-37 159.8 194 51.0
Phvul.002G051500 Phaseolus vulgaris HOM05D006229 ORTHO05D007190 4.7e-37 158.7 196 49.0
ClCG02G007070 Citrullus lanatus HOM05D006229 ORTHO05D007190 6.1e-37 158.3 176 52.3
Gohir.D04G159900 Gossypium hirsutum HOM05D006229 ORTHO05D007190 6.1e-37 158.3 189 48.7
Gorai.012G147300 Gossypium raimondii HOM05D006229 ORTHO05D007190 6.1e-37 158.3 189 48.7
TAR381G0595 Trochodendron aralioides HOM05D006229 ORTHO05D007190 6.1e-37 158.3 193 48.7
TAR381G1278 Trochodendron aralioides HOM05D006229 ORTHO05D007190 6.1e-37 158.3 193 48.7
CANSAT25G3217 Cannabis sativa HOM05D006229 ORTHO05D007190 7.9e-37 157.9 176 54.0
Glyma.01G242300 Glycine max HOM05D006229 ORTHO05D007190 7.9e-37 157.9 195 48.2
Gohir.A04G118200 Gossypium hirsutum HOM05D006229 ORTHO05D007190 7.9e-37 157.9 189 49.2
Sed0001379 Sechium edule HOM05D006229 ORTHO05D007190 7.9e-37 157.9 182 53.8
Medtr5g005010 Medicago truncatula HOM05D006229 ORTHO05D007190 1.4e-36 157.1 194 48.5
MELO3C018525.2 Cucumis melo HOM05D006229 ORTHO05D007190 2.3e-36 156.4 177 51.4
CsaV3_7G007770 Cucumis sativus L. HOM05D006229 ORTHO05D007190 3.0e-36 156.0 177 52.0
FvH4_2g03770 Fragaria vesca HOM05D006229 ORTHO05D007190 5.1e-36 155.2 194 49.5
FAN24G1336 Fragaria x ananassa HOM05D006229 ORTHO05D007190 5.1e-36 155.2 194 49.5
Sabra09G0066700 Salix brachista HOM05D006229 ORTHO05D007190 6.7e-36 154.8 176 49.4
Aqoxy6G02594 Aquilegia oxysepala HOM05D006229 ORTHO05D007190 8.8e-36 154.5 195 48.2
Ca_24360_v3 Cicer arietinum L. HOM05D006229 ORTHO05D007190 1.5e-35 153.7 192 47.4
RcHm_v2.0_Chr6g0252731 Rosa chinensis HOM05D006229 ORTHO05D007190 1.5e-35 153.7 192 49.0
SGA_v2.0_scaffold32G12994 Striga asiatica HOM05D006229 ORTHO05D007190 2.0e-35 153.3 191 51.3
Actinidia34359 Actinidia chinensis HOM05D006229 ORTHO05D007190 5.7e-35 151.8 202 47.5
Hma1.2p1_0661F.1_g198200 Hydrangea macrophylla HOM05D006229 ORTHO05D007190 5.7e-35 151.8 196 50.0
VMungo1215G0068 Vigna mungo HOM05D006229 ORTHO05D007190 9.7e-35 151.0 178 49.4
Atru.chr5.2332 Acer truncatum HOM05D006229 ORTHO05D007190 2.2e-34 149.8 192 47.9
Lj5C219G10 Lonicera japonica HOM05D006229 ORTHO05D007190 2.8e-34 149.4 188 48.9
Lalb_Chr09g0319621 Lupinus albus HOM05D006229 ORTHO05D007190 2.8e-34 149.4 193 45.6
Nn1g04542 Nelumbo nucifera HOM05D006229 ORTHO05D007190 3.7e-34 149.1 198 44.9
arahy.Tifrunner.gnm1.ann1.U3HZ1H Arachis hypogaea HOM05D006229 ORTHO05D007190 6.3e-34 148.3 195 45.1
Cpa.g.sc106.40 Carica papaya HOM05D006229 ORTHO05D007190 4.1e-33 145.6 188 46.3
Aa31LG8G12780 Aethionema arabicum HOM05D006229 ORTHO05D007190 7.0e-33 144.8 192 45.3
SalBow6G3929 Salvia bowleyana HOM05D006229 ORTHO05D007190 2.6e-32 142.9 191 48.7
BcaC06g36004 Brassica carinata HOM05D006229 ORTHO05D007190 7.7e-32 141.4 165 47.3
BraA07t28374Z Brassica rapa HOM05D006229 ORTHO05D007190 1.0e-31 141.0 165 47.3
Prupe.8G146100 Prunus persica HOM05D006229 ORTHO05D007190 1.0e-31 141.0 197 46.7
A07p05730 Brassica napus HOM05D006229 ORTHO05D007190 1.7e-31 140.2 165 46.7
C07p09110 Brassica napus HOM05D006229 ORTHO05D007190 2.9e-31 139.4 165 46.7
BolC7t41322H Brassica oleracea HOM05D006229 ORTHO05D007190 2.9e-31 139.4 165 46.7
HanXRQChr03g0073151 Helianthus annuus HOM05D006229 ORTHO05D007190 2.9e-31 139.4 199 43.7
BcaB03g16253 Brassica carinata HOM05D006229 ORTHO05D007190 3.8e-31 139.0 167 45.5
MD10G1106700 Malus domestica HOM05D006229 ORTHO05D007190 3.8e-31 139.0 199 45.7
PSO541G3151 Papaver somniferum HOM05D006229 ORTHO05D007190 5.0e-31 138.7 184 43.5
Thhalv10022593m.g Eutrema salsugineum HOM05D006229 ORTHO05D007190 8.5e-31 137.9 165 46.7
PSO675G2905 Papaver somniferum HOM05D006229 ORTHO05D007190 8.5e-31 137.9 184 44.0
Sp3g27780 Schrenkiella parvula HOM05D006229 ORTHO05D007190 8.5e-31 137.9 181 44.8
CARHR286390 Cardamine hirsuta HOM05D006229 ORTHO05D007190 1.1e-30 137.5 165 47.9
AT2G14680 Arabidopsis thaliana HOM05D006229 ORTHO05D007190 1.5e-30 137.1 182 44.0
AL3G46380 Arabidopsis lyrata HOM05D006229 ORTHO05D007190 2.5e-30 136.3 165 46.1
Carub.0003s2870 Capsella rubella HOM05D006229 ORTHO05D007190 3.2e-30 136.0 182 43.4
PGR142G3871 Punica granatum HOM05D006229 ORTHO05D007190 4.2e-30 135.6 178 46.1
THA.LOC104807215 Tarenaya hassleriana HOM05D006229 ORTHO05D007190 4.2e-30 135.6 189 45.5
MD05G1101600 Malus domestica HOM05D006229 ORTHO05D007190 9.4e-30 134.4 199 43.7
ATR0739G065 Amborella trichopoda HOM05D006229 ORTHO05D007190 4.7e-29 132.1 193 41.5
arahy.Tifrunner.gnm1.ann1.WVEK9H Arachis hypogaea HOM05D006229 ORTHO05D007190 3.0e-28 129.4 188 42.6
EL10Ac9g22197 Beta vulgaris HOM05D006229 ORTHO05D007190 4.0e-28 129.0 200 42.0
AUR62027009 Chenopodium quinoa HOM05D006229 ORTHO05D007190 1.1e-27 127.5 174 43.1
DCAR_003607 Daucus carota HOM05D006229 ORTHO05D007190 2.6e-27 126.3 198 41.9
SEGI_17957 Sequoiadendron giganteum HOM05D006229 ORTHO05D007190 2.6e-27 126.3 203 38.9
AUR62030848 Chenopodium quinoa HOM05D006229 ORTHO05D007190 1.3e-26 124.0 174 42.5
ECA240G1909 Erigeron canadensis HOM05D006229 ORTHO05D007190 3.7e-26 122.5 186 42.5
Duzib248G0077 Durio zibethinus HOM05D006229 ORTHO05D007190 4.8e-26 122.1 166 45.2
Sc18g0007440 Simmondsia chinensis HOM05D006229 ORTHO05D007190 9.1e-25 117.9 174 43.1
Ah.01g024640 Amaranthus hybridus HOM05D006229 ORTHO05D007190 2.2e-23 113.2 173 40.5
unitig_46.g18839 Utricularia gibba HOM05D006229 ORTHO05D007190 3.8e-23 112.5 175 42.3
Duzib132G1226 Durio zibethinus HOM05D006229 ORTHO05D007190 6.5e-23 111.7 187 40.6
Hund06515 Selenicereus undatus HOM05D006229 ORTHO05D007190 1.9e-22 110.2 190 40.5
CDE01G0760 Ceratophyllum demersum HOM05D006229 ORTHO05D007190 4.0e-20 102.4 189 37.0
Os03g0431800 Oryza sativa ssp. japonica HOM05D006229 ORTHO05D007190 2.2e-18 96.7 171 33.3
Lsat_1_v5_gn_9_112861 Lactuca sativa HOM05D006229 ORTHO05D007190 4.8e-18 95.5 171 38.6
HPP92_024894 Vanilla planifolia HOM05D006229 ORTHO05D007190 1.1e-17 94.4 171 35.7
Hund00426 Selenicereus undatus HOM05D006229 ORTHO05D007190 3.5e-16 89.4 190 36.3
Sc18g0007380 Simmondsia chinensis HOM05D006229 ORTHO05D007190 7.5e-11 71.6 96 45.8
SHI04983 Sapria himalayana HOM05D000023 ORTHO05D000014 1.6e-08 63.9 122 36.9
arahy.Tifrunner.gnm1.ann1.DEY174 Arachis hypogaea HOM05D006229 ORTHO05D007190 1.0e-07 61.2 69 50.7
Pp3c7_18650 Physcomitrium patens HOM05D006229 ORTHO05D007190 1.0e-07 61.2 175 29.7
CiPaw.05G018500 Carya illinoinensis HOM05D006229 ORTHO05D007190 1.9e-06 57.0 73 42.5
Mapoly0031s0064 Marchantia polymorpha HOM05D006229 ORTHO05D007190 4.3e-06 55.8 138 31.2


User provided reference genes

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