Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGSC0003DMG403020229 Solanum tuberosum HOM05D004846 ORTHO05D005630 0.0e+00 1778.1 892 100.0
Sopen02g038410 Solanum pennellii HOM05D004846 ORTHO05D005630 0.0e+00 1693.7 893 95.5
Solyc02g093770.3 Solanum lycopersicum HOM05D004846 ORTHO05D005630 0.0e+00 1687.9 893 95.4
CAN.G473.55 Capsicum annuum HOM05D004846 ORTHO05D005630 0.0e+00 1597.8 892 90.5
Nitab4.5_0001863g0210 Nicotiana tabacum HOM05D004846 ORTHO05D005630 0.0e+00 1557.3 900 87.3
Peaxi162Scf00420g00255 Petunia axillaris HOM05D004846 ORTHO05D005630 0.0e+00 1448.3 878 83.9
Dinv25698 Davidia involucrata HOM05D004846 ORTHO05D005630 0.0e+00 1261.1 904 69.8
Cc07_g00370 Coffea canephora HOM05D004846 ORTHO05D005630 0.0e+00 1224.9 904 68.6
GSVIVG01027213001 Vitis vinifera HOM05D004846 ORTHO05D005630 0.0e+00 1204.5 904 67.8
Actinidia05946 Actinidia chinensis HOM05D004846 ORTHO05D005630 0.0e+00 1201.4 904 66.7
CiPaw.03G050100 Carya illinoinensis HOM05D004846 ORTHO05D005630 0.0e+00 1195.6 905 65.5
Oeu062399.1 Olea europaea HOM05D004846 ORTHO05D005630 0.0e+00 1194.9 904 67.5
Potri.001G338000 Populus trichocarpa HOM05D004846 ORTHO05D005630 0.0e+00 1192.2 900 65.3
Manes.15G092600 Manihot esculenta HOM05D004846 ORTHO05D005630 0.0e+00 1186.4 904 65.4
CSS0030635 Camellia sinensis var. sinensis HOM05D004846 ORTHO05D005630 0.0e+00 1184.9 901 66.3
TAR371G0224 Trochodendron aralioides HOM05D004846 ORTHO05D005630 0.0e+00 1181.4 904 66.5
Cfa007283 Carpinus fangiana HOM05D004846 ORTHO05D005630 0.0e+00 1179.1 900 65.3
QL02p072992 Quercus lobata HOM05D004846 ORTHO05D005630 0.0e+00 1176.0 904 64.6
Migut.H00055 Erythranthe guttata HOM05D004846 ORTHO05D005630 0.0e+00 1160.2 904 65.7
MSTRG.24063 Avicennia marina HOM05D004846 ORTHO05D005630 0.0e+00 1159.8 904 65.9
Atru.chr6.2483 Acer truncatum HOM05D004846 ORTHO05D005630 0.0e+00 1141.3 904 65.0
SGA_v2.0_scaffold66G22277 Striga asiatica HOM05D004846 ORTHO05D005630 0.0e+00 1137.1 950 61.5
CANSAT64G0871 Cannabis sativa HOM05D004846 ORTHO05D005630 0.0e+00 1132.9 900 63.1
Rhsim10G0011500 Rhododendron simsii HOM05D004846 ORTHO05D005630 0.0e+00 1132.1 936 63.1
Ciclev10014098m.g Citrus clementina HOM05D004846 ORTHO05D005630 0.0e+00 1131.3 904 64.0
Glyma.19G082100 Glycine max HOM05D004846 ORTHO05D005630 0.0e+00 1126.7 906 62.1
Sabra16G0218700 Salix brachista HOM05D004846 ORTHO05D005630 0.0e+00 1124.4 967 59.8
CsaV3_3G046520 Cucumis sativus L. HOM05D004846 ORTHO05D005630 0.0e+00 1122.5 904 63.2
Prupe.3G299200 Prunus persica HOM05D004846 ORTHO05D005630 0.0e+00 1117.1 899 62.5
Phvul.008G148206 Phaseolus vulgaris HOM05D004846 ORTHO05D005630 0.0e+00 1112.4 907 61.6
Sc09g0010530 Simmondsia chinensis HOM05D004846 ORTHO05D005630 0.0e+00 1110.9 902 62.1
VMungo1127G0826 Vigna mungo HOM05D004846 ORTHO05D005630 0.0e+00 1105.9 905 61.0
MD09G1017700 Malus domestica HOM05D004846 ORTHO05D005630 0.0e+00 1104.4 899 62.1
Medtr7g037280 Medicago truncatula HOM05D004846 ORTHO05D005630 0.0e+00 1100.5 904 61.4
ClCG05G017040 Citrullus lanatus HOM05D004846 ORTHO05D005630 0.0e+00 1100.1 971 59.8
Lj1g0007607 Lotus japonicus HOM05D004846 ORTHO05D005630 0.0e+00 1099.7 905 61.0
MELO3C003688.2 Cucumis melo HOM05D004846 ORTHO05D005630 0.0e+00 1097.0 896 62.6
Sed0008655 Sechium edule HOM05D004846 ORTHO05D005630 0.0e+00 1095.5 904 61.7
Lj3C906G17 Lonicera japonica HOM05D004846 ORTHO05D005630 0.0e+00 1093.6 903 63.3
MBI15_g38527_MAGBIO Magnolia biondii HOM05D004846 ORTHO05D005630 0.0e+00 1091.6 908 61.2
ECA233G5463 Erigeron canadensis HOM05D004846 ORTHO05D005630 0.0e+00 1091.3 897 61.9
Sed0014062 Sechium edule HOM05D004846 ORTHO05D005630 0.0e+00 1088.9 905 62.2
MD17G1018500 Malus domestica HOM05D004846 ORTHO05D005630 0.0e+00 1088.6 899 61.0
TWI15G0720 Tripterygium wilfordii HOM05D004846 ORTHO05D005630 0.0e+00 1080.9 911 61.1
AUR62031596 Chenopodium quinoa HOM05D004846 ORTHO05D005630 0.0e+00 1080.1 900 61.0
Lsat_1_v5_gn_5_21981 Lactuca sativa HOM05D004846 ORTHO05D005630 0.0e+00 1078.2 902 61.4
AUR62012470 Chenopodium quinoa HOM05D004846 ORTHO05D005630 0.0e+00 1075.8 900 60.8
Hund19592 Selenicereus undatus HOM05D004846 ORTHO05D005630 2.4e-311 1072.0 903 59.8
DCAR_013672 Daucus carota HOM05D004846 ORTHO05D005630 3.1e-311 1071.6 895 61.2
vmacro05920 Vaccinium macrocarpon HOM05D004846 ORTHO05D005630 2.7e-310 1068.5 892 62.0
SalBow2G2965 Salvia bowleyana HOM05D004846 ORTHO05D005630 4.6e-310 1067.8 904 62.5
PSO210G2938 Papaver somniferum HOM05D004846 ORTHO05D005630 6.0e-310 1067.4 904 59.8
Lalb_Chr24g0403411 Lupinus albus HOM05D004846 ORTHO05D005630 3.0e-309 1065.1 899 60.5
Eucgr.J02281 Eucalyptus grandis HOM05D004846 ORTHO05D005630 3.9e-309 1064.7 899 61.2
Thecc.04G024900 Theobroma cacao HOM05D004846 ORTHO05D005630 5.1e-309 1064.3 911 61.4
HanXRQChr02g0054051 Helianthus annuus HOM05D004846 ORTHO05D005630 6.7e-309 1063.9 896 61.2
TPR.G9064 Trifolium pratense HOM05D004846 ORTHO05D005630 4.3e-308 1061.2 881 60.7
Ah.10g035510 Amaranthus hybridus HOM05D004846 ORTHO05D005630 7.4e-308 1060.4 892 60.8
FAN02G3962 Fragaria x ananassa HOM05D004846 ORTHO05D005630 4.8e-307 1057.7 899 59.0
FvH4_6g52480 Fragaria vesca HOM05D004846 ORTHO05D005630 6.2e-307 1057.4 899 59.1
PSO210G2073 Papaver somniferum HOM05D004846 ORTHO05D005630 6.2e-307 1057.4 905 59.8
RcHm_v2.0_Chr2g0174121 Rosa chinensis HOM05D004846 ORTHO05D005630 8.1e-307 1057.0 898 59.0
EL10Ac2g04126 Beta vulgaris HOM05D004846 ORTHO05D005630 1.1e-306 1056.6 954 56.6
PGSC0003DMG402020229 Solanum tuberosum HOM05D004846 ORTHO05D005630 1.8e-306 1055.8 539 95.9
FAN14G2722 Fragaria x ananassa HOM05D004846 ORTHO05D005630 4.0e-306 1054.7 899 58.8
arahy.Tifrunner.gnm1.ann1.QFX8QT Arachis hypogaea HOM05D004846 ORTHO05D005630 5.3e-306 1054.3 899 59.0
arahy.Tifrunner.gnm1.ann1.EI4BFE Arachis hypogaea HOM05D004846 ORTHO05D005630 1.5e-305 1052.7 899 58.8
FAN05G3122 Fragaria x ananassa HOM05D004846 ORTHO05D005630 4.5e-305 1051.2 908 58.3
HanXRQChr07g0193151 Helianthus annuus HOM05D004846 ORTHO05D005630 3.8e-304 1048.1 894 60.2
PGR083G2372 Punica granatum HOM05D004846 ORTHO05D005630 8.4e-304 1047.0 905 59.6
Gohir.D10G085400 Gossypium hirsutum HOM05D004846 ORTHO05D005630 1.9e-303 1045.8 903 61.8
Gohir.A10G160700 Gossypium hirsutum HOM05D004846 ORTHO05D005630 1.2e-302 1043.1 905 61.4
Gorai.011G093300 Gossypium raimondii HOM05D004846 ORTHO05D005630 2.1e-302 1042.3 903 61.7
Haze_14810 Corylus avellana HOM05D004846 ORTHO05D005630 4.6e-302 1041.2 931 59.3
FAN09G4064 Fragaria x ananassa HOM05D004846 ORTHO05D005630 2.3e-301 1038.9 899 58.4
THA.LOC104805347 Tarenaya hassleriana HOM05D004846 ORTHO05D005630 3.9e-301 1038.1 902 59.6
ATR0751G144 Amborella trichopoda HOM05D004846 ORTHO05D005630 5.0e-296 1021.1 912 58.6
Duzib187G0011 Durio zibethinus HOM05D004846 ORTHO05D005630 7.9e-294 1013.8 854 63.0
BcaC06g33832 Brassica carinata HOM05D004846 ORTHO05D005630 6.9e-290 1000.7 878 59.2
BolC7t44153H Brassica oleracea HOM05D004846 ORTHO05D005630 2.0e-289 999.2 878 59.1
C07p36370 Brassica napus HOM05D004846 ORTHO05D005630 5.9e-289 997.7 878 59.0
SGA_v2.0_scaffold135G34938 Striga asiatica HOM05D004846 ORTHO05D005630 1.7e-288 996.1 803 63.4
A06p41290 Brassica napus HOM05D004846 ORTHO05D005630 2.2e-288 995.7 902 58.3
BraA06t27054Z Brassica rapa HOM05D004846 ORTHO05D005630 2.2e-288 995.7 902 58.3
Cpa.g.sc130.45 Carica papaya HOM05D004846 ORTHO05D005630 2.5e-287 992.3 905 58.7
Thhalv10003555m.g Eutrema salsugineum HOM05D004846 ORTHO05D005630 1.0e-285 986.9 885 58.3
Sp2g16490 Schrenkiella parvula HOM05D004846 ORTHO05D005630 8.8e-285 983.8 885 57.6
BcaC06g31008 Brassica carinata HOM05D004846 ORTHO05D005630 3.3e-284 981.9 894 58.2
Carub.0005s0560 Capsella rubella HOM05D004846 ORTHO05D005630 3.3e-284 981.9 901 57.5
Dinv00597 Davidia involucrata HOM05D004846 ORTHO05D005630 4.3e-284 981.5 717 68.6
AT3G27325 Arabidopsis thaliana HOM05D004846 ORTHO05D005630 4.8e-283 978.0 901 57.8
Gohir.D09G032800 Gossypium hirsutum HOM05D004846 ORTHO05D005630 4.1e-282 974.9 880 57.7
Gorai.006G037800 Gossypium raimondii HOM05D004846 ORTHO05D005630 4.1e-282 974.9 880 57.7
C02p54070 Brassica napus HOM05D004846 ORTHO05D005630 9.1e-282 973.8 890 57.5
BolC2t11469H Brassica oleracea HOM05D004846 ORTHO05D005630 1.7e-280 969.5 890 57.3
A02p35330 Brassica napus HOM05D004846 ORTHO05D005630 3.8e-280 968.4 880 57.5
BraA02t08536Z Brassica rapa HOM05D004846 ORTHO05D005630 4.2e-279 964.9 879 57.1
COL.COLO4_29272 Corchorus olitorius HOM05D004846 ORTHO05D005630 3.6e-278 961.8 792 63.5
AL5G16590 Arabidopsis lyrata HOM05D004846 ORTHO05D005630 1.4e-277 959.9 902 56.5
Gohir.A09G032800 Gossypium hirsutum HOM05D004846 ORTHO05D005630 1.4e-277 959.9 880 57.2
Glyma.16G063300 Glycine max HOM05D004846 ORTHO05D005630 8.8e-277 957.2 798 60.2
Aa31LG2G5360 Aethionema arabicum HOM05D004846 ORTHO05D005630 3.7e-275 951.8 885 56.9
CARHR040910 Cardamine hirsuta HOM05D004846 ORTHO05D005630 6.3e-275 951.0 887 56.9
Os09g0266400 Oryza sativa ssp. japonica HOM05D004846 ORTHO05D005630 2.4e-274 949.1 913 54.9
HPP92_021915 Vanilla planifolia HOM05D004846 ORTHO05D005630 6.3e-259 897.9 907 51.7
Hma1.2p1_0279F.1_g112220 Hydrangea macrophylla HOM05D004846 ORTHO05D005630 4.5e-249 865.1 561 74.0
Psat3g169160 Pisum sativum HOM05D004846 ORTHO05D005630 3.4e-244 849.0 628 67.2
Zm00001eb308720 Zea mays HOM05D004846 ORTHO05D005630 2.8e-238 829.3 823 52.7
Mapoly0133s0025 Marchantia polymorpha HOM05D004846 ORTHO05D005630 2.6e-236 822.8 936 48.1
CDE01G0149 Ceratophyllum demersum HOM05D004846 ORTHO05D005630 2.7e-233 812.8 871 49.7
CDE02G2253 Ceratophyllum demersum HOM05D004846 ORTHO05D005630 1.0e-208 731.1 839 47.2
Pp3c3_36830 Physcomitrium patens HOM05D004846 ORTHO05D005630 2.1e-206 723.4 914 44.3
AagrBONN_evm.TU.Sc2ySwM_228.569 Anthoceros agrestis HOM05D004846 ORTHO05D005630 7.6e-204 714.9 831 47.8
Pp3c12_23520 Physcomitrium patens HOM05D004846 ORTHO05D005630 6.9e-197 691.8 933 42.7
Pp3c14_5780 Physcomitrium patens HOM05D004846 ORTHO05D005630 1.3e-192 677.6 932 42.3
SMO119G0307 Selaginella moellendorffii HOM05D004846 ORTHO05D005630 6.3e-182 642.1 896 42.3
Nn7g36106 Nelumbo nucifera HOM05D004846 ORTHO05D005630 2.5e-178 630.2 429 70.9
unitig_1.g29345 Utricularia gibba HOM05D004846 ORTHO05D005630 2.6e-119 434.1 891 34.2
SEGI_08787 Sequoiadendron giganteum HOM05D004846 ORTHO05D005630 4.6e-116 423.3 335 60.3
unitig_747.g22069 Utricularia gibba HOM05D004846 ORTHO05D005630 4.3e-114 416.8 897 33.4
unitig_748.g6967 Utricularia gibba HOM05D004846 ORTHO05D005630 1.8e-96 358.2 520 41.7
Dinv33387 Davidia involucrata HOM05D004846 ORTHO05D005630 2.4e-85 321.2 209 76.1
SHI03857 Sapria himalayana HOM05D004846 ORTHO05D000023 2.1e-81 308.1 246 61.4
Ca_26120_v3 Cicer arietinum L. HOM05D004846 ORTHO05D005630 3.9e-75 287.3 199 71.4
Actinidia36160 Actinidia chinensis HOM05D004846 ORTHO05D005630 2.5e-74 284.6 230 61.7
SEGI_28297 Sequoiadendron giganteum HOM05D004846 ORTHO05D005630 1.8e-72 278.5 379 44.1
CBR_g922 Chara braunii HOM05D004846 ORTHO05D005630 1.7e-70 271.9 924 26.9
Ca_14683_v3 Cicer arietinum L. HOM05D004846 ORTHO05D005630 7.9e-68 263.1 199 66.8
CSS0049777 Camellia sinensis var. sinensis HOM05D004846 ORTHO05D005630 6.3e-65 253.4 261 54.0
CSS0035751 Camellia sinensis var. sinensis HOM05D004846 ORTHO05D005630 1.2e-63 249.2 258 54.3
Hma1.2p1_0279F.1_g112210 Hydrangea macrophylla HOM05D004846 ORTHO05D005630 7.9e-60 236.5 209 57.4
CSS0015891 Camellia sinensis var. sinensis HOM05D004846 ORTHO05D005630 1.5e-55 222.2 210 56.7
CSS0005966 Camellia sinensis var. sinensis HOM05D004846 ORTHO05D005630 7.7e-55 219.9 224 54.5
Actinidia36162 Actinidia chinensis HOM05D004846 ORTHO05D005630 1.5e-47 195.7 159 61.6
CSS0050182 Camellia sinensis var. sinensis HOM05D003267 ORTHO05D005630 9.4e-45 186.4 175 53.7
CSS0025976 Camellia sinensis var. sinensis HOM05D003267 ORTHO05D005630 2.1e-44 185.3 175 53.7
CSS0029627 Camellia sinensis var. sinensis HOM05D003267 ORTHO05D005630 2.1e-44 185.3 175 53.7
CSS0035603 Camellia sinensis var. sinensis HOM05D003267 ORTHO05D005630 2.1e-44 185.3 175 53.7
CSS0012369 Camellia sinensis var. sinensis HOM05D003267 ORTHO05D005630 1.8e-43 182.2 175 53.1
CSS0012376 Camellia sinensis var. sinensis HOM05D004846 ORTHO05D005630 3.7e-41 174.5 243 43.2
Nn7g36110 Nelumbo nucifera HOM05D004846 ORTHO05D005630 7.7e-39 166.8 143 58.7
BolC7t44149H Brassica oleracea HOM05D004846 ORTHO05D017504 8.0e-36 156.8 259 38.6
C07p36330 Brassica napus HOM05D004846 ORTHO05D017504 1.4e-35 156.0 259 38.2
BcaC06g33836 Brassica carinata HOM05D004846 ORTHO05D017504 1.2e-34 152.9 259 38.6
CSS0003755 Camellia sinensis var. sinensis HOM05D003267 ORTHO05D005630 1.2e-34 152.9 175 48.0
unitig_748.g6968 Utricularia gibba HOM05D004846 ORTHO05D005630 4.1e-32 144.4 114 59.6
Dinv00598 Davidia involucrata HOM05D004846 ORTHO05D005630 2.7e-28 131.7 91 62.6
Cfa027235 Carpinus fangiana HOM05D004846 ORTHO05D005630 2.7e-23 115.2 169 36.7
Eucgr.J00244 Eucalyptus grandis HOM05D004846 ORTHO05D005630 5.9e-23 114.0 130 46.2
Ca_26612_v3 Cicer arietinum L. HOM05D004846 ORTHO05D005630 1.6e-20 105.9 240 32.9
Ca_14625_v3 Cicer arietinum L. HOM05D004846 ORTHO05D005630 6.8e-19 100.5 73 60.3
Cpa.g.c47899 Carica papaya HOM05D004846 ORTHO05D005630 2.4e-16 92.0 58 65.5
Ca_30652_v3 Cicer arietinum L. HOM05D004846 ORTHO05D005630 9.2e-16 90.1 79 53.2
HanXRQChr02g0047501 Helianthus annuus HOM05D004846 ORTHO05D005630 1.7e-09 69.3 53 64.2


User provided reference genes

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