Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGSC0003DMG403015876 Solanum tuberosum HOM05D001825 ORTHO05D010533 3.3e-24 116.7 319 100.0
PGSC0003DMG400017088 Solanum tuberosum HOM05D001825 ORTHO05D010533 1.2e-18 98.2 53 100.0
Glyma.10G070400 Glycine max HOM05D001825 ORTHO05D010533 6.6e-17 92.4 52 84.6
AUR62043748 Chenopodium quinoa HOM05D001825 ORTHO05D010533 8.6e-17 92.0 52 86.5
AUR62001116 Chenopodium quinoa HOM05D001825 ORTHO05D010533 4.3e-16 89.7 48 89.6
Lj3C1018T2 Lonicera japonica HOM05D001825 ORTHO05D002336 1.4e-14 84.7 52 84.6
Lj6C763G9 Lonicera japonica HOM05D001825 ORTHO05D002336 1.2e-13 81.6 43 90.7
Lalb_Chr10g0099901 Lupinus albus HOM05D001825 ORTHO05D010533 7.6e-13 79.0 47 83.0
MD01G1132700 Malus domestica HOM05D001825 ORTHO05D010533 7.6e-13 79.0 52 69.2
MD10G1108800 Malus domestica HOM05D001825 ORTHO05D010533 1.9e-11 74.3 44 81.8
AUR62044459 Chenopodium quinoa HOM05D001825 ORTHO05D010533 4.1e-11 73.2 39 89.7
arahy.Tifrunner.gnm1.ann1.I3PUBY Arachis hypogaea HOM05D001825 ORTHO05D002336 1.6e-10 71.2 37 89.2
BcaC04g21416 Brassica carinata HOM05D001825 ORTHO05D002336 1.6e-10 71.2 36 91.7
A06p42500 Brassica napus HOM05D001825 ORTHO05D002336 1.6e-10 71.2 36 91.7
C07p34700 Brassica napus HOM05D001825 ORTHO05D002336 1.6e-10 71.2 36 91.7
C07p34740 Brassica napus HOM05D001825 ORTHO05D002336 1.6e-10 71.2 36 91.7
C07p34760 Brassica napus HOM05D001825 ORTHO05D002336 1.6e-10 71.2 36 91.7
C09p32040 Brassica napus HOM05D001825 ORTHO05D010533 1.6e-10 71.2 36 91.7
BolC7t44001H Brassica oleracea HOM05D001825 ORTHO05D002336 1.6e-10 71.2 36 91.7
BraA06t27163Z Brassica rapa HOM05D001825 ORTHO05D002336 1.6e-10 71.2 36 91.7
QL10p025031 Quercus lobata HOM05D001825 ORTHO05D002336 1.6e-10 71.2 36 91.7
AUR62035258 Chenopodium quinoa HOM05D001825 ORTHO05D002336 2.1e-10 70.9 35 94.3
A08p27000 Brassica napus HOM05D001825 ORTHO05D002336 2.7e-10 70.5 36 88.9
BraA08t34646Z Brassica rapa HOM05D001825 ORTHO05D002336 2.7e-10 70.5 36 88.9
Gorai.013G081300 Gossypium raimondii HOM05D001825 ORTHO05D002336 2.7e-10 70.5 36 91.7
BcaC05g26446 Brassica carinata HOM05D001825 ORTHO05D010533 4.6e-10 69.7 36 88.9
A09p39520 Brassica napus HOM05D001825 ORTHO05D004551 4.6e-10 69.7 36 88.9
BraA09t39448Z Brassica rapa HOM05D001825 ORTHO05D002336 4.6e-10 69.7 36 88.9
BcaC06g35196 Brassica carinata HOM05D001825 ORTHO05D002336 7.8e-10 68.9 36 86.1
C07p18770 Brassica napus HOM05D001825 ORTHO05D002336 7.8e-10 68.9 36 86.1
BolC7t42385H Brassica oleracea HOM05D001825 ORTHO05D002336 7.8e-10 68.9 36 86.1
Psat2g126000 Pisum sativum HOM05D001085 ORTHO05D000895 3.0e-09 67.0 39 82.1
Psat2g126080 Pisum sativum HOM05D001085 ORTHO05D010533 8.6e-09 65.5 39 79.5
Psat4g132320 Pisum sativum HOM05D004733 ORTHO05D010533 8.6e-09 65.5 39 79.5
A07p12640 Brassica napus HOM05D001825 ORTHO05D002336 3.3e-08 63.5 33 84.8
BraA07t29042Z Brassica rapa HOM05D001825 ORTHO05D002336 3.3e-08 63.5 33 84.8
RcHm_v2.0_Chr1g0316561 Rosa chinensis HOM05D001825 ORTHO05D010533 1.2e-07 61.6 34 88.2
RcHm_v2.0_Chr4g0401841 Rosa chinensis HOM05D001825 ORTHO05D010533 1.2e-07 61.6 34 88.2
RcHm_v2.0_Chr4g0434251 Rosa chinensis HOM05D001825 ORTHO05D010533 1.2e-07 61.6 34 88.2
RcHm_v2.0_Chr5g0039511 Rosa chinensis HOM05D001825 ORTHO05D010533 1.2e-07 61.6 34 88.2
RcHm_v2.0_Chr7g0238001 Rosa chinensis HOM05D001825 ORTHO05D010533 1.2e-07 61.6 34 88.2
RcHm_v2.0_Chr1g0328271 Rosa chinensis HOM05D001825 ORTHO05D010533 2.1e-07 60.8 34 88.2
SalBow8G4326 Salvia bowleyana HOM05D001825 ORTHO05D002336 2.1e-07 60.8 34 85.3
BolC7t44006H Brassica oleracea HOM05D001825 ORTHO05D010533 4.7e-07 59.7 33 87.9
FAN28G1117 Fragaria x ananassa HOM05D001825 ORTHO05D002336 8.1e-07 58.9 34 85.3
SEGI_11745 Sequoiadendron giganteum HOM05D001825 ORTHO05D010533 8.1e-07 58.9 32 90.6
A09p25040 Brassica napus HOM05D001825 ORTHO05D010533 1.8e-06 57.8 35 82.9
BolC9t56056H Brassica oleracea HOM05D001825 ORTHO05D010533 4.0e-06 56.6 31 90.3


User provided reference genes

Program Settings