Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGSC0003DMG403008332 Solanum tuberosum HOM05D005916 ORTHO05D007168 1.6e-93 346.3 202 100.0
Sopen03g024920 Solanum pennellii HOM05D005916 ORTHO05D007168 9.1e-89 330.5 202 97.5
Solyc03g094030.4 Solanum lycopersicum HOM05D005916 ORTHO05D007168 2.7e-88 328.9 196 98.5
Nitab4.5_0000103g0220 Nicotiana tabacum HOM05D005916 ORTHO05D007168 3.1e-81 305.4 202 90.6
Nitab4.5_0003429g0010 Nicotiana tabacum HOM05D005916 ORTHO05D007168 8.9e-76 287.3 202 87.1
Ciclev10032791m.g Citrus clementina HOM05D005916 ORTHO05D007168 4.1e-73 278.5 206 77.7
Cc00_g13060 Coffea canephora HOM05D005916 ORTHO05D007168 9.2e-73 277.3 208 80.8
CSS0012195 Camellia sinensis var. sinensis HOM05D005916 ORTHO05D007168 1.6e-72 276.6 203 79.3
Cpa.g.sc13.218 Carica papaya HOM05D005916 ORTHO05D007168 2.7e-72 275.8 202 70.3
Manes.06G129600 Manihot esculenta HOM05D005916 ORTHO05D007168 4.5e-72 275.0 194 78.9
MELO3C017626.2 Cucumis melo HOM05D005916 ORTHO05D007168 1.9e-70 269.6 192 85.4
DCAR_014647 Daucus carota HOM05D005916 ORTHO05D007168 5.6e-70 268.1 195 70.3
Atru.chr6.1973 Acer truncatum HOM05D005916 ORTHO05D007168 7.3e-70 267.7 199 76.4
arahy.Tifrunner.gnm1.ann1.7NV6YZ Arachis hypogaea HOM05D005916 ORTHO05D007168 1.6e-69 266.5 198 78.3
arahy.Tifrunner.gnm1.ann1.VH0MPJ Arachis hypogaea HOM05D005916 ORTHO05D007168 1.6e-69 266.5 198 73.2
RcHm_v2.0_Chr1g0373201 Rosa chinensis HOM05D005916 ORTHO05D007168 1.6e-69 266.5 201 66.7
ClCG07G017200 Citrullus lanatus HOM05D005916 ORTHO05D007168 2.8e-69 265.8 192 84.9
Phvul.007G063000 Phaseolus vulgaris HOM05D005916 ORTHO05D007168 2.8e-69 265.8 201 66.7
CANSAT56G4429 Cannabis sativa HOM05D005916 ORTHO05D007168 3.6e-69 265.4 197 70.1
Dinv34531 Davidia involucrata HOM05D005916 ORTHO05D007168 3.6e-69 265.4 205 73.7
Glyma.10G242500 Glycine max HOM05D005916 ORTHO05D007168 3.6e-69 265.4 199 66.8
Psat6g202080 Pisum sativum HOM05D005916 ORTHO05D007168 4.7e-69 265.0 197 67.5
PGR083G1688 Punica granatum HOM05D005916 ORTHO05D007168 4.7e-69 265.0 188 83.0
GSVIVG01024482001 Vitis vinifera HOM05D005916 ORTHO05D007168 4.7e-69 265.0 200 79.5
Gohir.A07G044800 Gossypium hirsutum HOM05D005916 ORTHO05D007168 6.1e-69 264.6 204 76.0
VMungo0720G1184 Vigna mungo HOM05D005916 ORTHO05D007168 1.0e-68 263.8 203 66.5
FAN10G1904 Fragaria x ananassa HOM05D005916 ORTHO05D007168 1.8e-68 263.1 186 70.4
Gorai.001G052400 Gossypium raimondii HOM05D005916 ORTHO05D007168 1.8e-68 263.1 205 66.8
Lj5g0003841 Lotus japonicus HOM05D005916 ORTHO05D007168 1.8e-68 263.1 197 72.1
Thecc.03G145100 Theobroma cacao HOM05D005916 ORTHO05D007168 1.8e-68 263.1 207 67.1
FAN01G2833 Fragaria x ananassa HOM05D005916 ORTHO05D007168 2.3e-68 262.7 202 67.8
FAN06G3885 Fragaria x ananassa HOM05D005916 ORTHO05D007168 3.1e-68 262.3 198 68.2
CsaV3_4G004400 Cucumis sativus L. HOM05D005916 ORTHO05D007168 4.0e-68 261.9 192 77.1
FvH4_7g26530 Fragaria vesca HOM05D005916 ORTHO05D007168 4.0e-68 261.9 200 69.0
Gohir.D07G049300 Gossypium hirsutum HOM05D005916 ORTHO05D007168 4.0e-68 261.9 205 66.8
SGA_v2.0_scaffold69G23310 Striga asiatica HOM05D005916 ORTHO05D007168 4.0e-68 261.9 182 72.0
SGA_v2.0_scaffold136G34977 Striga asiatica HOM05D005916 ORTHO05D007168 6.8e-68 261.2 184 71.2
Eucgr.A02936 Eucalyptus grandis HOM05D005916 ORTHO05D007168 8.9e-68 260.8 199 65.3
EL10Ac5g12406 Beta vulgaris HOM05D005916 ORTHO05D007168 1.2e-67 260.4 205 71.2
Oeu046440.1 Olea europaea HOM05D005916 ORTHO05D007168 1.2e-67 260.4 199 71.4
Medtr1g102540 Medicago truncatula HOM05D005916 ORTHO05D007168 2.0e-67 259.6 197 78.2
Sc17g0004780 Simmondsia chinensis HOM05D005916 ORTHO05D007168 2.0e-67 259.6 184 76.1
Hund13383 Selenicereus undatus HOM05D005916 ORTHO05D007168 4.4e-67 258.5 199 78.9
Glyma.20G151600 Glycine max HOM05D005916 ORTHO05D007168 5.8e-67 258.1 200 71.5
Sabra15G0132700 Salix brachista HOM05D005916 ORTHO05D007168 7.5e-67 257.7 195 69.7
COL.COLO4_37304 Corchorus olitorius HOM05D005916 ORTHO05D007168 9.8e-67 257.3 199 68.8
MSTRG.8396 Avicennia marina HOM05D005916 ORTHO05D007168 1.3e-66 256.9 188 75.0
PSO782G0331 Papaver somniferum HOM05D005916 ORTHO05D007168 1.3e-66 256.9 199 66.8
vmacro09932 Vaccinium macrocarpon HOM05D005916 ORTHO05D007168 2.2e-66 256.1 202 74.3
Prupe.2G269700 Prunus persica HOM05D005916 ORTHO05D007168 2.9e-66 255.8 203 70.9
TPR.G26100 Trifolium pratense HOM05D005916 ORTHO05D007168 2.9e-66 255.8 196 70.9
PSO541G5205 Papaver somniferum HOM05D005916 ORTHO05D007168 3.7e-66 255.4 187 71.7
TWI39G0778 Tripterygium wilfordii HOM05D005916 ORTHO05D007168 3.7e-66 255.4 197 79.2
Potri.012G113400 Populus trichocarpa HOM05D005916 ORTHO05D007168 4.9e-66 255.0 201 64.7
Ah.01g021910 Amaranthus hybridus HOM05D005916 ORTHO05D007168 6.4e-66 254.6 204 67.2
PSO675G3127 Papaver somniferum HOM05D005916 ORTHO05D007168 6.4e-66 254.6 183 77.0
PSO063G1306 Papaver somniferum HOM05D005916 ORTHO05D007168 8.3e-66 254.2 199 66.3
Ca_10837_v3 Cicer arietinum L. HOM05D005916 ORTHO05D007168 1.1e-65 253.8 197 68.5
Migut.F01212 Erythranthe guttata HOM05D005916 ORTHO05D007168 1.1e-65 253.8 197 71.1
MD01G1174300 Malus domestica HOM05D005916 ORTHO05D007168 1.4e-65 253.4 199 64.8
QL09p027336 Quercus lobata HOM05D005916 ORTHO05D007168 1.4e-65 253.4 193 69.4
Potri.015G110900 Populus trichocarpa HOM05D005916 ORTHO05D007168 2.4e-65 252.7 197 71.6
CAN.G297.9 Capsicum annuum HOM05D005916 ORTHO05D007168 7.0e-65 251.1 200 79.5
MD07G1241000 Malus domestica HOM05D005916 ORTHO05D007168 9.2e-65 250.8 199 70.4
Nn6g33759 Nelumbo nucifera HOM05D005916 ORTHO05D007168 9.2e-65 250.8 213 73.2
CDE06G1827 Ceratophyllum demersum HOM05D005916 ORTHO05D007168 1.2e-64 250.4 196 74.0
ECA233G3320 Erigeron canadensis HOM05D005916 ORTHO05D007168 1.2e-64 250.4 200 75.0
THA.LOC104799659 Tarenaya hassleriana HOM05D005916 ORTHO05D007168 1.2e-64 250.4 197 74.1
AUR62029119 Chenopodium quinoa HOM05D005916 ORTHO05D007168 1.6e-64 250.0 192 79.2
Carub.0006s1828 Capsella rubella HOM05D005916 ORTHO05D007168 2.0e-64 249.6 196 66.3
CARHR192950 Cardamine hirsuta HOM05D005916 ORTHO05D007168 2.0e-64 249.6 196 73.5
AT5G19910 Arabidopsis thaliana HOM05D005916 ORTHO05D007168 3.5e-64 248.8 190 73.2
Thhalv10014735m.g Eutrema salsugineum HOM05D005916 ORTHO05D007168 3.5e-64 248.8 196 65.8
Sp6g24470 Schrenkiella parvula HOM05D005916 ORTHO05D007168 3.5e-64 248.8 199 65.3
Haze_22228 Corylus avellana HOM05D005916 ORTHO05D007168 6.0e-64 248.1 203 63.5
AL6G31440 Arabidopsis lyrata HOM05D005916 ORTHO05D007168 7.8e-64 247.7 196 65.8
MBI04_g13855_MAGBIO Magnolia biondii HOM05D005916 ORTHO05D007168 1.0e-63 247.3 182 78.6
Sed0012421 Sechium edule HOM05D001364 ORTHO05D007168 1.3e-63 246.9 180 82.8
HanXRQChr08g0223361 Helianthus annuus HOM05D005916 ORTHO05D007168 2.3e-63 246.1 193 81.9
Aqoxy3G02650 Aquilegia oxysepala HOM05D005916 ORTHO05D007168 3.0e-63 245.7 181 67.4
HanXRQChr03g0069461 Helianthus annuus HOM05D005916 ORTHO05D007168 6.6e-63 244.6 191 82.7
Aa31LG2G19640 Aethionema arabicum HOM05D005916 ORTHO05D007168 1.1e-62 243.8 198 70.2
A02p05910 Brassica napus HOM05D005916 ORTHO05D007168 2.5e-62 242.7 199 67.8
BraA02t05543Z Brassica rapa HOM05D005916 ORTHO05D007168 2.5e-62 242.7 199 67.8
BcaC04g19397 Brassica carinata HOM05D005916 ORTHO05D007168 5.6e-62 241.5 196 76.0
BolC9t58480H Brassica oleracea HOM05D003971 ORTHO05D004762 5.6e-62 241.5 194 76.8
Zm00001eb038950 Zea mays HOM05D005916 ORTHO05D007168 7.3e-62 241.1 203 72.9
BNapus_Darmor_BZH_scaffold_38p01960 Brassica napus HOM05D005916 ORTHO05D007168 1.2e-61 240.4 199 72.4
BolC2t06995H Brassica oleracea HOM05D005916 ORTHO05D007168 1.6e-61 240.0 199 72.4
EL10Ac9g22675 Beta vulgaris HOM05D005916 ORTHO05D007168 2.1e-61 239.6 201 64.2
BcaB08g36557 Brassica carinata HOM05D005916 ORTHO05D007168 3.6e-61 238.8 206 62.6
ATR1098G017 Amborella trichopoda HOM05D005916 ORTHO05D007168 6.2e-61 238.0 184 75.5
C09p56130 Brassica napus HOM05D003971 ORTHO05D004762 6.2e-61 238.0 194 76.3
Lsat_1_v5_gn_8_11541 Lactuca sativa HOM05D005916 ORTHO05D007168 8.0e-61 237.7 204 73.0
HPP92_020684 Vanilla planifolia HOM05D005916 ORTHO05D007168 1.8e-60 236.5 198 67.7
CAN.G706.26 Capsicum annuum HOM05D005916 ORTHO05D007168 3.4e-59 232.3 157 94.9
Os10g0564100 Oryza sativa ssp. japonica HOM05D005916 ORTHO05D007168 4.4e-59 231.9 201 71.6
TPR.G9644 Trifolium pratense HOM05D005916 ORTHO05D007168 8.3e-58 227.6 181 64.1
FvH4_5g39330 Fragaria vesca HOM05D005916 ORTHO05D007168 5.4e-57 224.9 130 82.3
FAN08G1750 Fragaria x ananassa HOM05D005916 ORTHO05D007168 5.4e-57 224.9 130 82.3
Lalb_Chr24g0402981 Lupinus albus HOM05D005916 ORTHO05D007168 9.2e-57 224.2 199 68.8
Os07g0164600 Oryza sativa ssp. japonica HOM05D005916 ORTHO05D007168 9.2e-57 224.2 120 85.0
FAN18G1579 Fragaria x ananassa HOM05D005916 ORTHO05D007168 6.0e-56 221.5 130 81.5
QL02p099223 Quercus lobata HOM05D005916 ORTHO05D007168 1.7e-55 219.9 115 84.3
FAN25G1847 Fragaria x ananassa HOM05D005916 ORTHO05D007168 4.3e-54 215.3 126 79.4
Atru.chr6.592 Acer truncatum HOM05D005916 ORTHO05D007168 5.6e-54 214.9 115 82.6
CiPaw.07G182800 Carya illinoinensis HOM05D005916 ORTHO05D007168 2.8e-53 212.6 200 66.5
CDE06G2153 Ceratophyllum demersum HOM05D005916 ORTHO05D007168 1.4e-52 210.3 196 62.8
Hma1.2p1_1014F.1_g247870 Hydrangea macrophylla HOM05D005916 ORTHO05D007168 2.3e-52 209.5 194 64.9
Mapoly0098s0031 Marchantia polymorpha HOM05D005916 ORTHO05D007168 2.3e-52 209.5 119 83.2
Lj8A49T46 Lonicera japonica HOM05D005916 ORTHO05D007168 3.4e-51 205.7 151 72.8
Dinv21889 Davidia involucrata HOM05D005916 ORTHO05D007168 4.4e-51 205.3 195 72.8
Pp3c26_180 Physcomitrium patens HOM05D005916 ORTHO05D007168 1.3e-50 203.8 129 73.6
AagrBONN_evm.TU.Sc2ySwM_362.2892 Anthoceros agrestis HOM05D005916 ORTHO05D007168 2.4e-49 199.5 120 77.5
Rhsim09G0188200 Rhododendron simsii HOM05D001364 ORTHO05D001316 1.9e-46 189.9 193 62.2
SEGI_39874 Sequoiadendron giganteum HOM05D005916 ORTHO05D007168 6.2e-45 184.9 91 91.2
AUR62015003 Chenopodium quinoa HOM05D005916 ORTHO05D007168 1.8e-44 183.3 107 82.2
Hma1.2p1_1014F.1_g247880 Hydrangea macrophylla HOM05D005916 ORTHO05D007168 1.8e-44 183.3 90 93.3
SalBow2G2523 Salvia bowleyana HOM05D005916 ORTHO05D007168 3.1e-44 182.6 154 59.7
Peaxi162Scf00073g01818 Petunia axillaris HOM05D005916 ORTHO05D007168 4.4e-35 152.1 119 85.7
SMO197G0072 Selaginella moellendorffii HOM05D005916 ORTHO05D007168 3.8e-34 149.1 82 82.9
PRCOL_00001580 Prasinoderma coloniale HOM05D005916 ORTHO05D007168 1.8e-28 130.2 101 55.4
unitig_90.g27553 Utricularia gibba HOM05D005916 ORTHO05D007168 4.0e-28 129.0 120 56.7
Actinidia31761 Actinidia chinensis HOM05D005916 ORTHO05D007168 2.2e-26 123.2 122 63.1
Dinv34527 Davidia involucrata HOM05D005916 ORTHO05D007168 2.1e-24 116.7 59 88.1
MCO04G185 Micromonas commoda HOM05D005916 ORTHO05D007168 1.0e-23 114.4 93 54.8
Actinidia01032 Actinidia chinensis HOM05D005916 ORTHO05D007168 1.4e-20 104.0 206 49.0
Pp3c13_24550 Physcomitrium patens HOM05D005916 ORTHO05D007168 9.0e-20 101.3 97 48.5
CBR_g3263 Chara braunii HOM05D000019 ORTHO05D000353 1.1e-17 94.4 89 55.1
Solyc03g094070.4 Solanum lycopersicum HOM05D005916 ORTHO05D007168 4.6e-16 89.0 113 47.8
PGSC0003DMG401008332 Solanum tuberosum HOM05D005916 ORTHO05D007168 3.3e-14 82.8 81 91.4
Cre12.g520850 Chlamydomonas reinhardtii HOM05D005916 ORTHO05D007168 4.8e-13 79.0 116 37.1
SalBow2G0368 Salvia bowleyana HOM05D005916 ORTHO05D007168 1.3e-10 70.9 45 75.6
FAN21G1143 Fragaria x ananassa HOM05D005916 ORTHO05D007168 3.8e-10 69.3 37 81.1
Cfa025999 Carpinus fangiana HOM05D005916 ORTHO05D007168 1.1e-06 57.8 83 43.4
FAN11G3144 Fragaria x ananassa HOM05D005916 ORTHO05D007168 1.5e-06 57.4 102 40.2


User provided reference genes

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