Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGSC0003DMG403005669 Solanum tuberosum HOM05D004897 ORTHO05D005928 7.5e-29 129.8 64 100.0
PGSC0003DMG400005743 Solanum tuberosum HOM05D004897 ORTHO05D005928 1.7e-25 118.6 63 92.1
Nitab4.5_0006894g0040 Nicotiana tabacum HOM05D004897 ORTHO05D005928 8.9e-22 106.3 64 82.8
Peaxi162Scf00683g00441 Petunia axillaris HOM05D004897 ORTHO05D005928 1.2e-21 105.9 64 84.4
CAN.G1129.49 Capsicum annuum HOM05D004897 ORTHO05D005928 2.0e-21 105.1 64 81.2
Nitab4.5_0001456g0120 Nicotiana tabacum HOM05D004897 ORTHO05D005928 4.4e-21 104.0 64 79.7
Actinidia18901 Actinidia chinensis HOM05D004897 ORTHO05D005928 1.0e-17 92.8 62 71.0
Actinidia35124 Actinidia chinensis HOM05D004897 ORTHO05D005928 1.0e-17 92.8 62 71.0
CSS0030961 Camellia sinensis var. sinensis HOM05D004897 ORTHO05D005928 3.9e-17 90.9 62 71.0
Rhsim12G0138900 Rhododendron simsii HOM05D004897 ORTHO05D005928 1.9e-16 88.6 62 67.7
Lj9C421G3 Lonicera japonica HOM05D004897 ORTHO05D005928 5.6e-16 87.0 63 68.3
Hma1.2p1_0669F.1_g200180 Hydrangea macrophylla HOM05D004897 ORTHO05D005928 7.3e-16 86.7 62 66.1
Cc04_g06380 Coffea canephora HOM05D004897 ORTHO05D005928 2.8e-15 84.7 62 62.9
CiPaw.15G140900 Carya illinoinensis HOM05D004897 ORTHO05D005928 1.4e-14 82.4 62 67.7
TAR622G0961 Trochodendron aralioides HOM05D004897 ORTHO05D005928 2.3e-14 81.6 62 66.1
Migut.D01558 Erythranthe guttata HOM05D004897 ORTHO05D005928 3.1e-14 81.3 59 64.4
Atru.chr9.1748 Acer truncatum HOM05D004897 ORTHO05D005928 4.0e-14 80.9 62 64.5
Hund02326 Selenicereus undatus HOM05D004897 ORTHO05D005928 4.0e-14 80.9 62 66.1
Duzib084G0246 Durio zibethinus HOM05D004897 ORTHO05D005928 6.8e-14 80.1 62 61.3
TWI81G0456 Tripterygium wilfordii HOM05D004897 ORTHO05D005928 8.9e-14 79.7 64 57.8
Ciclev10007731m.g Citrus clementina HOM05D004897 ORTHO05D005928 1.5e-13 79.0 62 64.5
DCAR_014009 Daucus carota HOM05D004897 ORTHO05D005928 1.5e-13 79.0 62 66.1
GSVIVG01008417001 Vitis vinifera HOM05D004897 ORTHO05D005928 1.5e-13 79.0 62 66.1
Potri.015G039800 Populus trichocarpa HOM05D004897 ORTHO05D005928 2.6e-13 78.2 62 61.3
arahy.Tifrunner.gnm1.ann1.QTT902 Arachis hypogaea HOM05D004897 ORTHO05D005928 3.4e-13 77.8 63 61.9
QL10p028216 Quercus lobata HOM05D004897 ORTHO05D005928 4.4e-13 77.4 62 62.9
QL10p028331 Quercus lobata HOM05D004897 ORTHO05D005928 4.4e-13 77.4 62 62.9
Cfa019677 Carpinus fangiana HOM05D004897 ORTHO05D005928 5.8e-13 77.0 62 62.9
Sabra15G0057300 Salix brachista HOM05D004897 ORTHO05D005928 5.8e-13 77.0 62 59.7
SalBow1G4576 Salvia bowleyana HOM05D004897 ORTHO05D005928 1.3e-12 75.9 61 62.3
arahy.Tifrunner.gnm1.ann1.Y8NJDB Arachis hypogaea HOM05D004897 ORTHO05D005928 2.2e-12 75.1 62 61.3
Haze_18817 Corylus avellana HOM05D004897 ORTHO05D005928 2.2e-12 75.1 62 61.3
Gohir.D12G269100 Gossypium hirsutum HOM05D004897 ORTHO05D005928 2.2e-12 75.1 62 56.5
Gorai.008G289400 Gossypium raimondii HOM05D004897 ORTHO05D005928 2.2e-12 75.1 62 56.5
Sed0018128 Sechium edule HOM05D004897 ORTHO05D005928 2.2e-12 75.1 64 59.4
Psat7g002120 Pisum sativum HOM05D004897 ORTHO05D005928 2.9e-12 74.7 62 58.1
SGA_v2.0_scaffold168G38498 Striga asiatica HOM05D004897 ORTHO05D005928 2.9e-12 74.7 58 62.1
MELO3C017351.2 Cucumis melo HOM05D004897 ORTHO05D005928 3.7e-12 74.3 62 61.3
CsaV3_1G004270 Cucumis sativus L. HOM05D004897 ORTHO05D005928 3.7e-12 74.3 62 61.3
Glyma.05G244800 Glycine max HOM05D004897 ORTHO05D005928 3.7e-12 74.3 62 58.1
Gohir.A12G268700 Gossypium hirsutum HOM05D004897 ORTHO05D005928 3.7e-12 74.3 62 56.5
AUR62042935 Chenopodium quinoa HOM05D004897 ORTHO05D005928 4.9e-12 73.9 62 61.3
Manes.14G170400 Manihot esculenta HOM05D004897 ORTHO05D005928 4.9e-12 73.9 62 59.7
Oeu014377.2 Olea europaea HOM05D004897 ORTHO05D005928 4.9e-12 73.9 62 58.1
ClCG06G014390 Citrullus lanatus HOM05D004897 ORTHO05D005928 8.3e-12 73.2 62 59.7
Glyma.08G053300 Glycine max HOM05D004897 ORTHO05D005928 1.1e-11 72.8 62 58.1
Phvul.002G329100 Phaseolus vulgaris HOM05D004897 ORTHO05D005928 1.1e-11 72.8 62 56.5
Thecc.03G053700 Theobroma cacao HOM05D004897 ORTHO05D005928 1.1e-11 72.8 62 56.5
Nn4g24194 Nelumbo nucifera HOM05D004897 ORTHO05D005928 1.4e-11 72.4 62 58.1
TWI60G0918 Tripterygium wilfordii HOM05D004897 ORTHO05D005928 1.4e-11 72.4 63 55.6
VMungo0251G1788 Vigna mungo HOM05D004897 ORTHO05D005928 1.4e-11 72.4 62 56.5
Medtr8g107060 Medicago truncatula HOM05D004897 ORTHO05D005928 3.2e-11 71.2 62 54.8
Dinv18253 Davidia involucrata HOM05D004897 ORTHO05D005928 4.1e-11 70.9 61 59.0
MSTRG.4571 Avicennia marina HOM05D004897 ORTHO05D005928 5.4e-11 70.5 62 54.8
CDE05G2998 Ceratophyllum demersum HOM05D004897 ORTHO05D005928 5.4e-11 70.5 63 54.0
Sp1g16170 Schrenkiella parvula HOM05D004897 ORTHO05D005928 5.4e-11 70.5 62 56.5
Aqoxy3G00106 Aquilegia oxysepala HOM05D004897 ORTHO05D005928 7.0e-11 70.1 62 54.8
PSO478G0546 Papaver somniferum HOM05D004897 ORTHO05D005928 7.0e-11 70.1 63 57.1
Sed0002019 Sechium edule HOM05D004897 ORTHO05D005928 7.0e-11 70.1 53 60.4
vmacro16414 Vaccinium macrocarpon HOM05D004897 ORTHO05D005928 7.0e-11 70.1 62 56.5
ECA233G2541 Erigeron canadensis HOM05D004897 ORTHO05D005928 1.2e-10 69.3 57 61.4
Thhalv10007004m.g Eutrema salsugineum HOM05D004897 ORTHO05D005928 1.2e-10 69.3 62 53.2
Lalb_Chr16g0387081 Lupinus albus HOM05D004897 ORTHO05D005928 1.2e-10 69.3 62 56.5
Sc10g0009320 Simmondsia chinensis HOM05D004897 ORTHO05D005928 1.2e-10 69.3 61 59.0
C08p18450 Brassica napus HOM05D004897 ORTHO05D005928 1.6e-10 68.9 62 54.8
BolC8t49476H Brassica oleracea HOM05D004897 ORTHO05D005928 1.6e-10 68.9 62 54.8
BraA08t34983Z Brassica rapa HOM05D004897 ORTHO05D005928 1.6e-10 68.9 62 54.8
Gohir.A09G175700 Gossypium hirsutum HOM05D004897 ORTHO05D005928 1.6e-10 68.9 62 53.2
BcaC05g25714 Brassica carinata HOM05D004897 ORTHO05D005928 2.0e-10 68.6 62 53.2
C05p16500 Brassica napus HOM05D004897 ORTHO05D005928 2.0e-10 68.6 62 53.2
BolC5t30347H Brassica oleracea HOM05D004897 ORTHO05D005928 2.0e-10 68.6 62 53.2
Lalb_Chr05g0221751 Lupinus albus HOM05D004897 ORTHO05D005928 2.0e-10 68.6 62 56.5
A06p14220 Brassica napus HOM05D004897 ORTHO05D005928 2.7e-10 68.2 62 53.2
BraA06t24553Z Brassica rapa HOM05D004897 ORTHO05D005928 2.7e-10 68.2 62 53.2
PSO017G1741 Papaver somniferum HOM05D004897 ORTHO05D005928 2.7e-10 68.2 63 58.7
Ca_17200_v3 Cicer arietinum L. HOM05D004897 ORTHO05D005928 3.5e-10 67.8 62 53.2
MBI12_g30398_MAGBIO Magnolia biondii HOM05D004897 ORTHO05D005928 3.5e-10 67.8 62 51.6
PGR083G0946 Punica granatum HOM05D004897 ORTHO05D005928 3.5e-10 67.8 64 51.6
COL.COLO4_16135 Corchorus olitorius HOM05D004897 ORTHO05D005928 6.0e-10 67.0 62 51.6
Lj4g0010445 Lotus japonicus HOM05D004897 ORTHO05D005928 6.0e-10 67.0 62 51.6
AT1G18190 Arabidopsis thaliana HOM05D004897 ORTHO05D005928 7.8e-10 66.6 62 51.6
BcaC07g38902 Brassica carinata HOM05D004897 ORTHO05D005928 7.8e-10 66.6 61 54.1
Carub.0001s1783 Capsella rubella HOM05D004897 ORTHO05D005928 7.8e-10 66.6 62 51.6
FAN04G2242 Fragaria x ananassa HOM05D004897 ORTHO05D005928 7.8e-10 66.6 48 60.4
FAN08G3076 Fragaria x ananassa HOM05D004897 ORTHO05D005928 7.8e-10 66.6 48 60.4
THA.LOC104812165 Tarenaya hassleriana HOM05D004897 ORTHO05D005928 7.8e-10 66.6 62 50.0
BcaB07g31825 Brassica carinata HOM05D004897 ORTHO05D005928 1.0e-09 66.2 62 51.6
A08p30510 Brassica napus HOM05D004897 ORTHO05D005928 1.0e-09 66.2 62 53.2
FAN18G0124 Fragaria x ananassa HOM05D004897 ORTHO05D005928 1.0e-09 66.2 48 60.4
RcHm_v2.0_Chr7g0178571 Rosa chinensis HOM05D004897 ORTHO05D005928 1.3e-09 65.9 48 60.4
AL1G30560 Arabidopsis lyrata HOM05D004897 ORTHO05D005928 1.7e-09 65.5 62 51.6
BcaNung05436 Brassica carinata HOM05D004897 ORTHO05D005928 1.7e-09 65.5 62 51.6
Gohir.D09G170550 Gossypium hirsutum HOM05D004897 ORTHO05D005928 3.0e-09 64.7 62 53.2
Aa31LG7G2880 Aethionema arabicum HOM05D004897 ORTHO05D005928 3.9e-09 64.3 62 50.0
BcaB03g12969 Brassica carinata HOM05D004897 ORTHO05D005928 3.9e-09 64.3 62 50.0
FAN13G1819 Fragaria x ananassa HOM05D004897 ORTHO05D005928 3.9e-09 64.3 48 58.3
Gorai.006G192100 Gossypium raimondii HOM05D004897 ORTHO05D005928 5.0e-09 63.9 62 53.2
Prupe.5G232100 Prunus persica HOM05D004897 ORTHO05D005928 5.0e-09 63.9 48 60.4
Ah.11g045250 Amaranthus hybridus HOM05D004897 ORTHO05D005928 8.6e-09 63.2 53 58.5
Oeu041181.1 Olea europaea HOM05D004897 ORTHO05D005928 1.5e-08 62.4 54 61.1
MD06G1230800 Malus domestica HOM05D004897 ORTHO05D005928 4.3e-08 60.8 48 56.2
MD14G1235400 Malus domestica HOM05D004897 ORTHO05D005928 4.3e-08 60.8 48 56.2
Eucgr.B00942 Eucalyptus grandis HOM05D004897 ORTHO05D005928 9.5e-08 59.7 62 48.4
CARHR018760 Cardamine hirsuta HOM05D004897 ORTHO05D005928 2.1e-07 58.5 64 48.4
Lsat_1_v5_gn_8_144040 Lactuca sativa HOM05D004897 ORTHO05D005928 4.7e-07 57.4 46 56.5
Os04g0652500 Oryza sativa ssp. japonica HOM05D004897 ORTHO05D005928 4.7e-07 57.4 61 47.5
HPP92_013368 Vanilla planifolia HOM05D004897 ORTHO05D005928 2.3e-06 55.1 62 45.2
ATR1102G018 Amborella trichopoda HOM05D004897 ORTHO05D005928 5.2e-06 53.9 53 47.2


User provided reference genes

Program Settings