Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGSC0003DMG402032565 Solanum tuberosum HOM05D005624 ORTHO05D006896 4.1e-110 401.4 196 100.0
Sopen04g004320 Solanum pennellii HOM05D005624 ORTHO05D006896 1.9e-107 392.5 196 97.4
Solyc04g009190.3 Solanum lycopersicum HOM05D005624 ORTHO05D006896 1.8e-105 386.0 196 95.9
Nitab4.5_0001089g0030 Nicotiana tabacum HOM05D005624 ORTHO05D006896 1.9e-99 365.9 196 89.3
Nitab4.5_0011777g0020 Nicotiana tabacum HOM05D005624 ORTHO05D006896 1.6e-98 362.8 196 88.8
Peaxi162Scf00681g00118 Petunia axillaris HOM05D005624 ORTHO05D006896 3.6e-98 361.7 196 89.8
Peaxi162Scf00334g00119 Petunia axillaris HOM05D005624 ORTHO05D006896 2.1e-90 335.9 196 81.1
CAN.G39.18 Capsicum annuum HOM05D005624 ORTHO05D006896 2.6e-88 328.9 193 80.3
Atru.chr12.1491 Acer truncatum HOM05D005624 ORTHO05D006896 2.2e-87 325.9 198 78.8
Sc17g0003450 Simmondsia chinensis HOM05D005624 ORTHO05D006896 4.9e-87 324.7 199 78.9
PGSC0003DMG400029983 Solanum tuberosum HOM05D005624 ORTHO05D006896 4.9e-87 324.7 193 80.3
Hund05398 Selenicereus undatus HOM05D005624 ORTHO05D006896 2.4e-86 322.4 196 79.1
Gohir.A08G221500 Gossypium hirsutum HOM05D005624 ORTHO05D006896 9.2e-86 320.5 199 79.9
Gohir.D08G238100 Gossypium hirsutum HOM05D005624 ORTHO05D006896 9.2e-86 320.5 199 79.9
Sopen02g002020 Solanum pennellii HOM05D005624 ORTHO05D006896 9.2e-86 320.5 193 78.8
Gorai.004G253600 Gossypium raimondii HOM05D005624 ORTHO05D006896 1.2e-85 320.1 199 79.4
Ciclev10005917m.g Citrus clementina HOM05D005624 ORTHO05D006896 3.5e-85 318.5 197 76.1
Solyc02g005603.1 Solanum lycopersicum HOM05D005624 ORTHO05D006896 3.5e-85 318.5 193 78.8
Prupe.1G209600 Prunus persica HOM05D005624 ORTHO05D006896 3.8e-84 315.1 202 75.7
CiPaw.05G096300 Carya illinoinensis HOM05D005624 ORTHO05D006896 5.0e-84 314.7 200 77.0
MSTRG.8074 Avicennia marina HOM05D005624 ORTHO05D006896 6.6e-84 314.3 202 75.7
AUR62008562 Chenopodium quinoa HOM05D005624 ORTHO05D006896 6.6e-84 314.3 196 77.0
ClCG10G013180 Citrullus lanatus HOM05D005624 ORTHO05D006896 8.6e-84 313.9 198 75.3
Sabra01G0051200 Salix brachista HOM05D005624 ORTHO05D006896 1.1e-83 313.5 198 76.3
Sed0005404 Sechium edule HOM05D005624 ORTHO05D006896 1.1e-83 313.5 198 76.3
Potri.003G158200 Populus trichocarpa HOM05D005624 ORTHO05D006896 1.5e-83 313.2 198 74.7
SalBow2G1530 Salvia bowleyana HOM05D005624 ORTHO05D006896 1.9e-83 312.8 194 76.8
TWI75G1298 Tripterygium wilfordii HOM05D005624 ORTHO05D006896 1.9e-83 312.8 202 75.2
AUR62033199 Chenopodium quinoa HOM05D005624 ORTHO05D006896 2.5e-83 312.4 196 76.5
CsaV3_3G043430 Cucumis sativus L. HOM05D005624 ORTHO05D006896 7.3e-83 310.8 198 74.7
TWI18G0768 Tripterygium wilfordii HOM05D005624 ORTHO05D006896 9.5e-83 310.5 202 75.2
Duzib128G1380 Durio zibethinus HOM05D005624 ORTHO05D006896 1.2e-82 310.1 199 75.4
MD16G1131300 Malus domestica HOM05D005624 ORTHO05D006896 1.2e-82 310.1 202 73.3
QL03p047013 Quercus lobata HOM05D005624 ORTHO05D006896 1.2e-82 310.1 200 77.0
Actinidia33983 Actinidia chinensis HOM05D005624 ORTHO05D006896 2.1e-82 309.3 199 75.4
Ah.03g134040 Amaranthus hybridus HOM05D005624 ORTHO05D006896 2.1e-82 309.3 196 75.5
Aqoxy3G01649 Aquilegia oxysepala HOM05D005624 ORTHO05D006896 2.8e-82 308.9 201 75.1
Potri.001G072600 Populus trichocarpa HOM05D005624 ORTHO05D006896 2.8e-82 308.9 194 75.8
CANSAT25G1757 Cannabis sativa HOM05D005624 ORTHO05D006896 3.6e-82 308.5 204 74.0
DCAR_028131 Daucus carota HOM05D005624 ORTHO05D006896 3.6e-82 308.5 198 74.7
Thecc.05G235200 Theobroma cacao HOM05D005624 ORTHO05D006896 3.6e-82 308.5 199 75.9
Eucgr.J01702 Eucalyptus grandis HOM05D005624 ORTHO05D006896 1.0e-81 307.0 200 75.0
Hma1.2p1_0562F.1_g179050 Hydrangea macrophylla HOM05D005624 ORTHO05D006896 1.0e-81 307.0 204 74.0
PSO017G6046 Papaver somniferum HOM05D005624 ORTHO05D006896 1.0e-81 307.0 205 73.7
PSO478G3843 Papaver somniferum HOM05D005624 ORTHO05D006896 1.0e-81 307.0 205 73.7
CSS0016097 Camellia sinensis var. sinensis HOM05D005624 ORTHO05D006896 1.4e-81 306.6 200 74.5
Cfa020947 Carpinus fangiana HOM05D005624 ORTHO05D006896 1.4e-81 306.6 200 75.0
COL.COLO4_32213 Corchorus olitorius HOM05D005624 ORTHO05D006896 1.4e-81 306.6 200 75.0
Haze_19383 Corylus avellana HOM05D005624 ORTHO05D006896 1.4e-81 306.6 200 75.0
MD13G1135700 Malus domestica HOM05D005624 ORTHO05D006896 1.8e-81 306.2 202 72.8
Sed0018373 Sechium edule HOM05D005624 ORTHO05D006896 3.0e-81 305.4 200 74.5
TAR622G0071 Trochodendron aralioides HOM05D005624 ORTHO05D006896 3.0e-81 305.4 203 73.4
Lj4g0021292 Lotus japonicus HOM05D005624 ORTHO05D006896 4.0e-81 305.1 202 73.3
Lj3A918T40 Lonicera japonica HOM05D005624 ORTHO05D006896 5.2e-81 304.7 195 74.9
PGR119G0553 Punica granatum HOM05D005624 ORTHO05D006896 5.2e-81 304.7 197 75.1
Cc11_g14800 Coffea canephora HOM05D005624 ORTHO05D006896 6.8e-81 304.3 199 73.4
Manes.08G097600 Manihot esculenta HOM05D005624 ORTHO05D006896 6.8e-81 304.3 200 72.5
Zm00001eb318180 Zea mays HOM05D005624 ORTHO05D006896 6.8e-81 304.3 198 75.3
FvH4_4g21930 Fragaria vesca HOM05D005624 ORTHO05D006896 8.9e-81 303.9 202 74.3
BcaB01g05468 Brassica carinata HOM05D005624 ORTHO05D006896 1.2e-80 303.5 201 73.6
Oeu032685.1 Olea europaea HOM05D005624 ORTHO05D006896 1.2e-80 303.5 195 74.4
GSVIVG01001144001 Vitis vinifera HOM05D005624 ORTHO05D006896 1.5e-80 303.1 195 74.9
Zm00001eb102600 Zea mays HOM05D005624 ORTHO05D006896 2.0e-80 302.8 198 75.8
EL10Ac7g17520 Beta vulgaris HOM05D005624 ORTHO05D006896 3.4e-80 302.0 196 74.5
C03p05810 Brassica napus HOM05D000602 ORTHO05D006896 3.4e-80 302.0 198 73.7
BolC3t13101H Brassica oleracea HOM05D005624 ORTHO05D006896 3.4e-80 302.0 198 73.7
THA.LOC104811263 Tarenaya hassleriana HOM05D005624 ORTHO05D006896 3.4e-80 302.0 202 71.8
BolC2t06481H Brassica oleracea HOM05D005624 ORTHO05D006896 7.5e-80 300.8 204 72.1
BraA03t09846Z Brassica rapa HOM05D005624 ORTHO05D006896 9.8e-80 300.4 205 71.7
Sp6g31930 Schrenkiella parvula HOM05D005624 ORTHO05D006896 9.8e-80 300.4 205 71.7
Migut.L00899 Erythranthe guttata HOM05D005624 ORTHO05D006896 1.3e-79 300.1 199 72.9
arahy.Tifrunner.gnm1.ann1.CA7SJ1 Arachis hypogaea HOM05D005624 ORTHO05D006896 1.7e-79 299.7 202 73.8
arahy.Tifrunner.gnm1.ann1.YB0CZG Arachis hypogaea HOM05D005624 ORTHO05D006896 1.7e-79 299.7 202 73.8
CARHR201540 Cardamine hirsuta HOM05D005624 ORTHO05D006896 1.7e-79 299.7 206 70.9
TPR.G6115 Trifolium pratense HOM05D005624 ORTHO05D006896 1.7e-79 299.7 204 71.6
HPP92_013550 Vanilla planifolia HOM05D005624 ORTHO05D006896 2.2e-79 299.3 198 74.2
Medtr8g070860 Medicago truncatula HOM05D005624 ORTHO05D006896 3.7e-79 298.5 200 71.5
Rhsim12G0090500 Rhododendron simsii HOM05D005624 ORTHO05D006896 3.7e-79 298.5 200 72.5
BcaC03g13386 Brassica carinata HOM05D005624 ORTHO05D006896 4.9e-79 298.1 202 73.3
FAN17G0486 Fragaria x ananassa HOM05D005624 ORTHO05D006896 4.9e-79 298.1 202 73.3
AL6G22400 Arabidopsis lyrata HOM05D005624 ORTHO05D006896 8.3e-79 297.4 205 71.2
Psat4g111480 Pisum sativum HOM05D005624 ORTHO05D006896 1.1e-78 297.0 200 70.0
RcHm_v2.0_Chr4g0428141 Rosa chinensis HOM05D005624 ORTHO05D006896 1.1e-78 297.0 202 72.8
AT5G11680 Arabidopsis thaliana HOM05D005624 ORTHO05D006896 2.4e-78 295.8 205 70.2
Lsat_1_v5_gn_1_78160 Lactuca sativa HOM05D005624 ORTHO05D006896 2.4e-78 295.8 199 73.4
Phvul.003G274200 Phaseolus vulgaris HOM05D005624 ORTHO05D006896 2.4e-78 295.8 203 70.4
CiPaw.06G112400 Carya illinoinensis HOM05D005624 ORTHO05D006896 5.4e-78 294.7 212 71.7
Glyma.08G266400 Glycine max HOM05D005624 ORTHO05D006896 5.4e-78 294.7 200 70.5
Glyma.16G101200 Glycine max HOM05D005624 ORTHO05D006896 5.4e-78 294.7 200 71.0
VMungo0251G1277 Vigna mungo HOM05D005624 ORTHO05D006896 9.2e-78 293.9 200 71.5
Carub.0006s1018 Capsella rubella HOM05D005624 ORTHO05D006896 1.2e-77 293.5 200 71.0
unitig_22.g6367 Utricularia gibba HOM05D005624 ORTHO05D006896 1.2e-77 293.5 197 70.6
Aa31LG3G15530 Aethionema arabicum HOM05D000602 ORTHO05D001147 2.0e-77 292.7 200 71.0
Thhalv10014678m.g Eutrema salsugineum HOM05D005624 ORTHO05D006896 2.0e-77 292.7 204 71.1
ATR0582G264 Amborella trichopoda HOM05D005624 ORTHO05D006896 3.9e-76 288.5 204 69.1
unitig_8.g3112 Utricularia gibba HOM05D005624 ORTHO05D006896 2.1e-74 282.7 223 65.0
ECA236G4393 Erigeron canadensis HOM05D000127 ORTHO05D000243 6.2e-74 281.2 195 69.2
HanXRQChr10g0312121 Helianthus annuus HOM05D005624 ORTHO05D006896 8.9e-73 277.3 198 69.2
Peaxi162Scf00021g02113 Petunia axillaris HOM05D005624 ORTHO05D006896 1.5e-72 276.6 194 67.0
CAN.G619.7 Capsicum annuum HOM05D005624 ORTHO05D006896 2.2e-71 272.7 143 92.3
MELO3C026760.2 Cucumis melo HOM05D005624 ORTHO05D006896 2.5e-67 259.2 169 72.2
Zm00001eb071390 Zea mays HOM05D005624 ORTHO05D006896 2.8e-66 255.8 163 77.3
A03p05080 Brassica napus HOM05D000602 ORTHO05D006896 8.1e-66 254.2 183 67.8
Duzib177G0503 Durio zibethinus HOM05D005624 ORTHO05D006896 1.8e-65 253.1 199 66.3
Nitab4.5_0000069g0230 Nicotiana tabacum HOM05D005624 ORTHO05D006896 1.8e-65 253.1 197 65.5
Lsat_1_v5_gn_5_173840 Lactuca sativa HOM05D005624 ORTHO05D006896 5.2e-65 251.5 196 65.3
Nitab4.5_0004301g0080 Nicotiana tabacum HOM05D005624 ORTHO05D006896 3.4e-64 248.8 197 64.5
HanXRQChr01g0012261 Helianthus annuus HOM05D005624 ORTHO05D006896 4.9e-63 245.0 197 61.4
vmacro16032 Vaccinium macrocarpon HOM05D005624 ORTHO05D006896 3.2e-62 242.3 160 73.8
SMO164G0111 Selaginella moellendorffii HOM05D005624 ORTHO05D006896 4.6e-61 238.4 196 57.1
Pp3c7_9270 Physcomitrium patens HOM05D005624 ORTHO05D006896 2.5e-59 232.6 202 58.9
Solyc01g008220.3 Solanum lycopersicum HOM05D005624 ORTHO05D006896 4.7e-58 228.4 191 58.6
Dinv02966 Davidia involucrata HOM05D005624 ORTHO05D006896 1.4e-57 226.9 144 77.1
AagrBONN_evm.TU.Sc2ySwM_117.3158 Anthoceros agrestis HOM05D005624 ORTHO05D006896 3.4e-56 222.2 197 55.8
MBI11_g04265_MAGBIO Magnolia biondii HOM05D005624 ORTHO05D006896 4.9e-55 218.4 159 66.0
Mapoly0097s0090 Marchantia polymorpha HOM05D005624 ORTHO05D006896 6.4e-55 218.0 202 55.4
MBI07_g41258_MAGBIO Magnolia biondii HOM05D005624 ORTHO05D006896 4.3e-51 205.3 129 76.0
PGSC0003DMG400016363 Solanum tuberosum HOM05D005624 ORTHO05D006896 6.4e-47 191.4 168 59.5
Zm00001eb036000 Zea mays HOM05D005624 ORTHO05D006896 1.7e-44 183.3 119 75.6
Zm00001eb052330 Zea mays HOM05D005624 ORTHO05D006896 1.7e-44 183.3 119 74.8
Gohir.A13G159151 Gossypium hirsutum HOM05D005624 ORTHO05D006896 3.3e-43 179.1 137 67.9
Gorai.013G198700 Gossypium raimondii HOM05D005624 ORTHO05D006896 2.1e-42 176.4 142 64.1
Lalb_Chr05g0228971 Lupinus albus HOM05D005624 ORTHO05D006896 2.1e-42 176.4 124 63.7
CBR_g24147 Chara braunii HOM05D005624 ORTHO05D006896 3.0e-36 156.0 161 51.6
Migut.L00595 Erythranthe guttata HOM05D005624 ORTHO05D006896 2.0e-32 143.3 97 70.1
C02p05330 Brassica napus HOM05D005624 ORTHO05D006896 3.2e-30 136.0 95 72.6
CAN.G282.51 Capsicum annuum HOM05D005624 ORTHO05D006896 4.2e-30 135.6 200 44.5
Cre03.g189100 Chlamydomonas reinhardtii HOM05D005624 ORTHO05D006896 7.9e-29 131.3 200 39.5
CSS0031660 Camellia sinensis var. sinensis HOM05D005624 ORTHO05D006896 2.5e-22 109.8 100 59.0
Cc08_g00010 Coffea canephora HOM05D005624 ORTHO05D006896 4.3e-19 99.0 75 65.3
Cc10_g16310 Coffea canephora HOM05D005624 ORTHO05D006896 1.4e-17 94.0 79 60.8
SEGI_14660 Sequoiadendron giganteum HOM05D005624 ORTHO05D006896 2.6e-16 89.7 66 65.2
Cc06_g22650 Coffea canephora HOM05D005624 ORTHO05D006896 5.1e-12 75.5 75 56.0
Dinv02968 Davidia involucrata HOM05D005624 ORTHO05D006896 8.8e-12 74.7 57 61.4
Lalb_Chr05g0228961 Lupinus albus HOM05D005624 ORTHO05D006896 6.9e-09 65.1 36 83.3
Os09g0512900 Oryza sativa ssp. japonica HOM05D005624 ORTHO05D006896 5.0e-07 58.9 36 72.2
SEGI_32969 Sequoiadendron giganteum HOM05D005624 ORTHO05D006896 1.1e-06 57.8 32 81.2
Lsat_1_v5_gn_4_78441 Lactuca sativa HOM05D005624 ORTHO05D006896 3.2e-06 56.2 35 65.7


User provided reference genes

Program Settings