Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGSC0003DMG402032165 Solanum tuberosum HOM05D007392 ORTHO05D009181 4.2e-65 251.1 121 100.0
Sopen01g001550 Solanum pennellii HOM05D007392 ORTHO05D009181 5.7e-62 240.7 126 96.0
Solyc01g005530.3 Solanum lycopersicum HOM05D007392 ORTHO05D009181 3.7e-61 238.0 126 94.4
CAN.G1834.12 Capsicum annuum HOM05D007392 ORTHO05D009181 1.8e-55 219.2 122 86.1
Peaxi162Scf00705g00062 Petunia axillaris HOM05D007392 ORTHO05D009181 1.5e-38 162.9 134 69.4
Dinv13477 Davidia involucrata HOM05D007392 ORTHO05D009181 2.6e-38 162.2 143 62.2
Cc01_g00150 Coffea canephora HOM05D007392 ORTHO05D009181 4.5e-35 151.4 145 58.6
Nitab4.5_0006195g0060 Nicotiana tabacum HOM05D007392 ORTHO05D009181 1.1e-33 146.7 115 71.3
Nitab4.5_0000551g0100 Nicotiana tabacum HOM05D007392 ORTHO05D009181 8.0e-32 140.6 113 68.1
SalBow3G3897 Salvia bowleyana HOM05D007392 ORTHO05D009181 2.6e-30 135.6 138 55.1
GSVIVG01025476001 Vitis vinifera HOM05D007392 ORTHO05D009181 1.7e-29 132.9 136 57.4
Actinidia16241 Actinidia chinensis HOM05D007392 ORTHO05D009181 6.4e-29 131.0 137 51.8
Lsat_1_v5_gn_6_55560 Lactuca sativa HOM05D007392 ORTHO05D009181 2.7e-27 125.6 143 49.0
Migut.D02571 Erythranthe guttata HOM05D007392 ORTHO05D009181 2.3e-26 122.5 126 57.9
SGA_v2.0_scaffold6G03356 Striga asiatica HOM05D007392 ORTHO05D009181 2.3e-26 122.5 143 51.0
Actinidia00905 Actinidia chinensis HOM05D007392 ORTHO05D009181 3.0e-26 122.1 143 48.3
ECA233G2404 Erigeron canadensis HOM05D007392 ORTHO05D009181 3.3e-25 118.6 145 47.6
Migut.D02593 Erythranthe guttata HOM05D007392 ORTHO05D009181 3.3e-25 118.6 128 53.9
Potri.001G003300 Populus trichocarpa HOM05D007392 ORTHO05D009181 3.3e-25 118.6 141 47.5
Oeu004754.1 Olea europaea HOM05D007392 ORTHO05D009181 5.6e-25 117.9 115 55.7
FvH4_3g45780 Fragaria vesca HOM05D007392 ORTHO05D009181 2.1e-24 115.9 143 48.3
RcHm_v2.0_Chr5g0083851 Rosa chinensis HOM05D007392 ORTHO05D009181 3.6e-24 115.2 144 51.4
Manes.15G109800 Manihot esculenta HOM05D007392 ORTHO05D009181 4.7e-24 114.8 153 47.7
Rhsim13G0233100 Rhododendron simsii HOM05D007392 ORTHO05D009181 6.2e-24 114.4 120 52.5
Cfa009557 Carpinus fangiana HOM05D007392 ORTHO05D009181 1.4e-23 113.2 137 51.8
TWI34G1824 Tripterygium wilfordii HOM05D007392 ORTHO05D009181 1.8e-23 112.8 146 47.9
Potri.003G221800 Populus trichocarpa HOM05D007392 ORTHO05D009181 2.3e-23 112.5 142 48.6
CiPaw.13G177600 Carya illinoinensis HOM05D007392 ORTHO05D009181 5.2e-23 111.3 137 51.8
FAN11G3804 Fragaria x ananassa HOM05D007392 ORTHO05D009181 8.9e-23 110.5 142 47.9
MD03G1003200 Malus domestica HOM05D007392 ORTHO05D009181 1.2e-22 110.2 150 43.3
FAN16G0802 Fragaria x ananassa HOM05D007392 ORTHO05D009181 2.0e-22 109.4 145 48.3
SGA_v2.0_scaffold6G03313 Striga asiatica HOM05D007392 ORTHO05D009181 7.5e-22 107.5 136 47.8
Ciclev10017000m.g Citrus clementina HOM05D007392 ORTHO05D009181 2.2e-21 105.9 157 43.3
MSTRG.20935 Avicennia marina HOM05D000287 ORTHO05D000319 2.9e-21 105.5 117 52.1
Oeu059652.1 Olea europaea HOM05D007392 ORTHO05D009181 3.7e-21 105.1 115 53.9
TAR623G1707 Trochodendron aralioides HOM05D007392 ORTHO05D009181 1.4e-20 103.2 134 49.3
DCAR_032194 Daucus carota HOM05D007392 ORTHO05D009181 2.4e-20 102.4 126 48.4
PSO384G3152 Papaver somniferum HOM05D007392 ORTHO05D009181 4.1e-20 101.7 138 47.1
Nn2g15869 Nelumbo nucifera HOM05D007392 ORTHO05D009181 5.4e-20 101.3 139 46.8
PSO339G3225 Papaver somniferum HOM05D007392 ORTHO05D009181 7.0e-20 100.9 140 45.7
Aqoxy2G00525 Aquilegia oxysepala HOM05D007392 ORTHO05D009181 2.7e-19 99.0 133 45.9
Prupe.6G002800 Prunus persica HOM05D007392 ORTHO05D009181 6.6e-18 94.4 133 48.1
Eucgr.J01763 Eucalyptus grandis HOM05D007392 ORTHO05D009181 8.6e-18 94.0 138 42.8
Sc09g0000040 Simmondsia chinensis HOM05D007392 ORTHO05D009181 8.6e-18 94.0 162 40.1
Migut.N00543 Erythranthe guttata HOM05D007392 ORTHO05D009181 1.1e-17 93.6 115 50.4
Sabra03G0165000 Salix brachista HOM05D007392 ORTHO05D009181 1.5e-17 93.2 120 49.2
FAN25G2102 Fragaria x ananassa HOM05D007392 ORTHO05D009181 2.5e-17 92.4 124 49.2
vmacro04261 Vaccinium macrocarpon HOM05D007392 ORTHO05D009181 2.5e-17 92.4 102 50.0
QL01p003594 Quercus lobata HOM05D007392 ORTHO05D009181 3.3e-17 92.0 163 39.3
CANSAT11G0973 Cannabis sativa HOM05D007392 ORTHO05D009181 5.6e-17 91.3 140 42.9
EL10Ac4g10390 Beta vulgaris HOM05D007392 ORTHO05D009181 2.1e-16 89.4 137 39.4
Thhalv10021633m.g Eutrema salsugineum HOM05D007392 ORTHO05D009181 4.7e-16 88.2 168 37.5
Sabra01G0002400 Salix brachista HOM05D007392 ORTHO05D009181 1.1e-15 87.0 126 43.7
THA.LOC104810320 Tarenaya hassleriana HOM05D007392 ORTHO05D009181 1.1e-15 87.0 150 39.3
MD11G1003000 Malus domestica HOM05D007392 ORTHO05D009181 2.3e-15 85.9 148 38.5
CsaV3_1G041630 Cucumis sativus L. HOM05D007392 ORTHO05D009181 1.2e-14 83.6 141 43.3
CARHR088140 Cardamine hirsuta HOM05D007392 ORTHO05D009181 1.5e-14 83.2 162 37.7
Sp3g11690 Schrenkiella parvula HOM05D007392 ORTHO05D009181 1.5e-14 83.2 172 37.8
AT3G13480 Arabidopsis thaliana HOM05D007392 ORTHO05D009181 3.4e-14 82.0 167 38.3
vmacro23199 Vaccinium macrocarpon HOM05D007392 ORTHO05D009181 3.4e-14 82.0 96 46.9
BcaC05g29176 Brassica carinata HOM05D007392 ORTHO05D009181 4.4e-14 81.6 167 37.1
C01p51590 Brassica napus HOM05D007392 ORTHO05D009181 5.8e-14 81.3 154 38.3
A05p36050 Brassica napus HOM05D007392 ORTHO05D009181 7.5e-14 80.9 163 37.4
BraA03t12977Z Brassica rapa HOM05D007392 ORTHO05D009181 7.5e-14 80.9 167 35.3
Nn7g35849 Nelumbo nucifera HOM05D007392 ORTHO05D009181 7.5e-14 80.9 115 43.5
MELO3C015574.2 Cucumis melo HOM05D007392 ORTHO05D009181 9.8e-14 80.5 141 41.1
BolC1t05102H Brassica oleracea HOM05D007392 ORTHO05D009181 1.7e-13 79.7 154 38.3
PGR119G0135 Punica granatum HOM05D007392 ORTHO05D009181 2.2e-13 79.3 142 40.1
BcaB04g18766 Brassica carinata HOM05D007392 ORTHO05D009181 2.9e-13 79.0 154 37.7
AL3G25390 Arabidopsis lyrata HOM05D007392 ORTHO05D009181 4.9e-13 78.2 165 37.6
Carub.0003s1294 Capsella rubella HOM05D007392 ORTHO05D009181 8.3e-13 77.4 164 37.2
A01p40100 Brassica napus HOM05D007392 ORTHO05D009181 1.4e-12 76.6 154 39.0
BraA01t04052Z Brassica rapa HOM05D007392 ORTHO05D009181 1.4e-12 76.6 154 39.0
Sed0020032 Sechium edule HOM05D007392 ORTHO05D009181 1.4e-12 76.6 138 40.6
ClCG03G014560 Citrullus lanatus HOM05D007392 ORTHO05D009181 3.2e-12 75.5 135 41.5
HPP92_015638 Vanilla planifolia HOM05D007392 ORTHO05D009181 7.8e-11 70.9 129 38.8
Aa31LG8G680 Aethionema arabicum HOM05D007392 ORTHO05D009181 1.3e-10 70.1 133 33.8
Cpa.g.sc119.37 Carica papaya HOM05D007392 ORTHO05D009181 1.3e-10 70.1 60 60.0
HPP92_024836 Vanilla planifolia HOM05D007392 ORTHO05D009181 2.3e-10 69.3 133 39.1
HPP92_026624 Vanilla planifolia HOM05D007392 ORTHO05D009181 2.3e-10 69.3 133 38.3
BcaC01g03991 Brassica carinata HOM05D007392 ORTHO05D009181 9.5e-09 63.9 142 35.2
C03p46430 Brassica napus HOM05D007392 ORTHO05D009181 1.2e-08 63.5 110 40.9
C05p54400 Brassica napus HOM05D007392 ORTHO05D009181 1.2e-08 63.5 145 35.2
Eucgr.F04191 Eucalyptus grandis HOM05D003947 ORTHO05D004614 6.2e-08 61.2 137 37.2
Phvul.007G083100 Phaseolus vulgaris HOM05D003947 ORTHO05D004614 1.4e-07 60.1 140 35.7
Os01g0589700 Oryza sativa ssp. japonica HOM05D003947 ORTHO05D004614 1.8e-07 59.7 136 34.6
VMungo0720G0983 Vigna mungo HOM05D003947 ORTHO05D004614 1.8e-07 59.7 140 35.7
C03p46400 Brassica napus HOM05D007392 ORTHO05D009181 3.1e-07 58.9 142 35.2
PGR044G0664 Punica granatum HOM05D003947 ORTHO05D004614 5.2e-07 58.2 147 34.0
Aa31LG10G780 Aethionema arabicum HOM05D007392 ORTHO05D009181 2.0e-06 56.2 68 51.5
Carub.0001s4396 Capsella rubella HOM05D007392 ORTHO05D009181 3.4e-06 55.5 73 43.8
AT1G55475 Arabidopsis thaliana HOM05D007392 ORTHO05D009181 4.4e-06 55.1 95 38.9
AL1G63490 Arabidopsis lyrata HOM05D007392 ORTHO05D009181 7.6e-06 54.3 62 48.4
Carub.0001s2230 Capsella rubella HOM05D003947 ORTHO05D004614 7.6e-06 54.3 147 31.3
PSO700G0284 Papaver somniferum HOM05D003947 ORTHO05D004614 7.6e-06 54.3 124 35.5
GSVIVG01034579001 Vitis vinifera HOM05D003947 ORTHO05D004614 7.6e-06 54.3 137 30.7
Actinidia04751 Actinidia chinensis HOM05D003947 ORTHO05D004614 9.9e-06 53.9 107 36.4
Os03g0795100 Oryza sativa ssp. japonica HOM05D029728 ORTHO05D009181 9.9e-06 53.9 59 42.4
Thecc.08G158700 Theobroma cacao HOM05D003947 ORTHO05D004614 9.9e-06 53.9 139 33.8


User provided reference genes

Program Settings