Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGSC0003DMG402030323 Solanum tuberosum HOM05D005444 ORTHO05D006773 3.3e-89 331.6 162 100.0
PGSC0003DMG401030323 Solanum tuberosum HOM05D005444 ORTHO05D006773 7.3e-89 330.5 162 99.4
Solyc06g076250.4 Solanum lycopersicum HOM05D005444 ORTHO05D006773 8.1e-88 327.0 162 98.8
Sopen06g032680 Solanum pennellii HOM05D005444 ORTHO05D006773 8.1e-88 327.0 162 98.8
CAN.G394.63 Capsicum annuum HOM05D005444 ORTHO05D006773 2.3e-82 308.9 162 93.8
Nitab4.5_0001326g0170 Nicotiana tabacum HOM05D005444 ORTHO05D006773 2.1e-80 302.4 162 91.4
Nitab4.5_0000463g0210 Nicotiana tabacum HOM05D005444 ORTHO05D006773 4.8e-80 301.2 162 90.7
Peaxi162Scf00774g00121 Petunia axillaris HOM05D005444 ORTHO05D006773 3.0e-74 282.0 165 84.2
Actinidia34411 Actinidia chinensis HOM05D005444 ORTHO05D006773 9.6e-65 250.4 167 72.5
Dinv04178 Davidia involucrata HOM05D005444 ORTHO05D006773 1.3e-61 240.0 161 71.4
CSS0026048 Camellia sinensis var. sinensis HOM05D005444 ORTHO05D006773 1.7e-61 239.6 166 71.7
Rhsim01G0229400 Rhododendron simsii HOM05D005444 ORTHO05D006773 7.9e-59 230.7 165 67.9
ECA236G0569 Erigeron canadensis HOM05D005444 ORTHO05D006773 2.3e-58 229.2 169 63.9
SGA_v2.0_scaffold203G41537 Striga asiatica HOM05D005444 ORTHO05D006773 1.1e-57 226.9 176 65.9
Cfa011517 Carpinus fangiana HOM05D005444 ORTHO05D006773 1.5e-57 226.5 169 68.0
Haze_24114 Corylus avellana HOM05D005444 ORTHO05D006773 3.3e-57 225.3 169 66.9
SalBow3G1488 Salvia bowleyana HOM05D005444 ORTHO05D006773 5.7e-57 224.6 196 57.1
Sc21g0005860 Simmondsia chinensis HOM05D005444 ORTHO05D006773 5.7e-57 224.6 156 69.9
Lsat_1_v5_gn_8_73500 Lactuca sativa HOM05D005444 ORTHO05D006773 2.1e-56 222.6 169 62.7
Cc01_g13010 Coffea canephora HOM05D005444 ORTHO05D006773 4.8e-56 221.5 162 66.7
Migut.D02083 Erythranthe guttata HOM05D005444 ORTHO05D006773 8.2e-56 220.7 163 66.3
HanXRQChr05g0135061 Helianthus annuus HOM05D005444 ORTHO05D006773 8.2e-56 220.7 170 61.8
GSVIVG01024939001 Vitis vinifera HOM05D005444 ORTHO05D006773 8.2e-56 220.7 161 66.5
Actinidia23933 Actinidia chinensis HOM05D000001 ORTHO05D000003 5.3e-55 218.0 160 65.6
QL01p031522 Quercus lobata HOM05D005444 ORTHO05D006773 3.4e-54 215.3 161 65.2
Potri.001G241400 Populus trichocarpa HOM05D005444 ORTHO05D006773 7.6e-54 214.2 163 64.4
PGR102G1676 Punica granatum HOM05D005444 ORTHO05D006773 2.2e-53 212.6 165 59.4
CANSAT54G1668 Cannabis sativa HOM05D005444 ORTHO05D006773 5.0e-53 211.5 162 63.0
Atru.chr3.3946 Acer truncatum HOM05D005444 ORTHO05D006773 8.4e-53 210.7 161 63.4
AUR62001772 Chenopodium quinoa HOM05D005444 ORTHO05D006773 8.4e-53 210.7 160 65.0
Manes.02G131500 Manihot esculenta HOM05D005444 ORTHO05D006773 8.4e-53 210.7 161 62.7
Hund04946 Selenicereus undatus HOM05D005444 ORTHO05D006773 1.1e-52 210.3 161 62.7
AUR62009560 Chenopodium quinoa HOM05D005444 ORTHO05D006773 2.5e-52 209.1 160 65.0
Ciclev10028946m.g Citrus clementina HOM05D005444 ORTHO05D006773 3.2e-52 208.8 165 61.2
FvH4_3g36480 Fragaria vesca HOM05D005444 ORTHO05D006773 5.5e-52 208.0 159 59.7
FAN16G3284 Fragaria x ananassa HOM05D005444 ORTHO05D006773 9.3e-52 207.2 159 60.4
FAN21G3395 Fragaria x ananassa HOM05D005444 ORTHO05D006773 1.6e-51 206.5 159 59.7
HanXRQChr06g0178811 Helianthus annuus HOM05D005444 ORTHO05D006773 1.6e-51 206.5 158 62.7
Gorai.001G111300 Gossypium raimondii HOM05D005444 ORTHO05D006773 4.6e-51 204.9 161 60.2
MD03G1090200 Malus domestica HOM05D005444 ORTHO05D006773 1.3e-50 203.4 159 59.7
Gohir.D07G103400 Gossypium hirsutum HOM05D005444 ORTHO05D006773 1.8e-50 203.0 161 60.2
Eucgr.B02353 Eucalyptus grandis HOM05D005444 ORTHO05D006773 3.9e-50 201.8 160 60.0
PSO063G3487 Papaver somniferum HOM05D005444 ORTHO05D006773 5.1e-50 201.4 161 57.8
PSO339G5422 Papaver somniferum HOM05D005444 ORTHO05D006773 1.1e-49 200.3 161 57.8
Gohir.A07G098900 Gossypium hirsutum HOM05D005444 ORTHO05D006773 1.9e-49 199.5 161 59.6
FAN11G0832 Fragaria x ananassa HOM05D005444 ORTHO05D006773 2.5e-49 199.1 168 56.5
RcHm_v2.0_Chr5g0065341 Rosa chinensis HOM05D005444 ORTHO05D006773 2.5e-49 199.1 157 58.0
MD11G1099800 Malus domestica HOM05D005444 ORTHO05D006773 3.3e-49 198.7 170 58.2
Lj1A150T42 Lonicera japonica HOM05D005444 ORTHO05D006773 5.7e-49 198.0 138 68.8
COL.COLO4_18527 Corchorus olitorius HOM05D005444 ORTHO05D006773 7.4e-49 197.6 161 59.6
Sabra09G0022900 Salix brachista HOM05D005444 ORTHO05D006773 7.4e-49 197.6 163 60.7
Ca_01319_v3 Cicer arietinum L. HOM05D005444 ORTHO05D006773 9.7e-49 197.2 162 58.0
Potri.009G032300 Populus trichocarpa HOM05D005444 ORTHO05D006773 1.3e-48 196.8 161 59.6
Lj3g0017515 Lotus japonicus HOM05D005444 ORTHO05D006773 2.8e-48 195.7 161 57.8
THA.LOC104810774 Tarenaya hassleriana HOM05D005444 ORTHO05D006773 3.7e-48 195.3 161 57.1
Sed0025445 Sechium edule HOM05D005444 ORTHO05D006773 4.8e-48 194.9 161 55.9
Glyma.12G062600 Glycine max HOM05D005444 ORTHO05D006773 1.1e-47 193.7 161 56.5
Medtr2g097230 Medicago truncatula HOM05D005444 ORTHO05D006773 1.4e-47 193.4 161 57.8
VMungo1127G0766 Vigna mungo HOM05D005444 ORTHO05D006773 1.4e-47 193.4 161 58.4
CsaV3_1G034350 Cucumis sativus L. HOM05D005444 ORTHO05D006773 1.8e-47 193.0 161 55.9
ATR0559G091 Amborella trichopoda HOM05D005444 ORTHO05D006773 6.9e-47 191.0 159 60.4
Glyma.13G336800 Glycine max HOM05D005444 ORTHO05D006773 1.2e-46 190.3 161 55.3
TPR.G34263 Trifolium pratense HOM05D005444 ORTHO05D006773 1.5e-46 189.9 161 57.1
Phvul.011G063700 Phaseolus vulgaris HOM05D005444 ORTHO05D006773 2.0e-46 189.5 161 55.3
Oeu002422.1 Olea europaea HOM05D005444 ORTHO05D006773 1.0e-45 187.2 138 66.7
Glyma.15G037500 Glycine max HOM05D005444 ORTHO05D006773 1.3e-45 186.8 160 55.6
VMungo1080G1107 Vigna mungo HOM05D000758 ORTHO05D002867 1.3e-45 186.8 162 56.2
arahy.Tifrunner.gnm1.ann1.T6ZDSA Arachis hypogaea HOM05D005444 ORTHO05D006773 2.9e-45 185.7 161 56.5
arahy.Tifrunner.gnm1.ann1.9NI65Y Arachis hypogaea HOM05D005444 ORTHO05D006773 5.0e-45 184.9 161 56.5
EL10Ac7g16033 Beta vulgaris HOM05D005444 ORTHO05D006773 5.0e-45 184.9 138 65.2
Phvul.L006243 Phaseolus vulgaris HOM05D005444 ORTHO05D006773 1.9e-44 183.0 161 54.0
arahy.Tifrunner.gnm1.ann1.XH3YCC Arachis hypogaea HOM05D005444 ORTHO05D006773 3.2e-44 182.2 161 57.1
vmacro14541 Vaccinium macrocarpon HOM05D005444 ORTHO05D006773 3.2e-44 182.2 142 62.0
Oeu017397.1 Olea europaea HOM05D005444 ORTHO05D006773 7.2e-44 181.0 150 60.0
Lalb_Chr01g0003631 Lupinus albus HOM05D005444 ORTHO05D006773 1.6e-43 179.9 164 55.5
Sp6g21080 Schrenkiella parvula HOM05D005444 ORTHO05D006773 2.1e-43 179.5 165 54.5
Aa31sc23G420 Aethionema arabicum HOM05D005444 ORTHO05D006773 3.6e-43 178.7 162 53.7
AT5G59400 Arabidopsis thaliana HOM05D005444 ORTHO05D006773 3.6e-43 178.7 163 53.4
arahy.Tifrunner.gnm1.ann1.3F7RX4 Arachis hypogaea HOM05D005444 ORTHO05D006773 6.1e-43 177.9 161 55.9
BcaB08g36261 Brassica carinata HOM05D005444 ORTHO05D006773 7.9e-43 177.6 161 53.4
BraA10t43744Z Brassica rapa HOM05D005444 ORTHO05D006773 7.9e-43 177.6 161 54.7
Sabra16G0145900 Salix brachista HOM05D005444 ORTHO05D006773 7.9e-43 177.6 138 63.8
Carub.0008s2007 Capsella rubella HOM05D005444 ORTHO05D006773 1.8e-42 176.4 163 53.4
Aqoxy1G00926 Aquilegia oxysepala HOM05D005444 ORTHO05D006773 2.3e-42 176.0 153 58.2
BcaC04g19778 Brassica carinata HOM05D005444 ORTHO05D006773 2.3e-42 176.0 161 54.0
A10p16600 Brassica napus HOM05D005444 ORTHO05D006773 2.3e-42 176.0 161 54.0
C09p51810 Brassica napus HOM05D005444 ORTHO05D006773 2.3e-42 176.0 161 54.0
BolC9t58042H Brassica oleracea HOM05D005444 ORTHO05D006773 2.3e-42 176.0 161 54.0
AL8G35870 Arabidopsis lyrata HOM05D005444 ORTHO05D006773 3.9e-42 175.3 163 52.8
ClCG03G001420 Citrullus lanatus HOM05D005444 ORTHO05D006773 3.9e-42 175.3 212 43.9
TWI79G0937 Tripterygium wilfordii HOM05D005444 ORTHO05D006773 3.9e-42 175.3 167 52.7
CARHR285770 Cardamine hirsuta HOM05D005444 ORTHO05D006773 6.7e-42 174.5 164 52.4
CDE09G1090 Ceratophyllum demersum HOM05D005444 ORTHO05D006773 6.7e-42 174.5 155 58.1
TAR633G2200 Trochodendron aralioides HOM05D005444 ORTHO05D006773 1.5e-41 173.3 138 61.6
Zm00001eb355820 Zea mays HOM05D005444 ORTHO05D006773 5.7e-41 171.4 149 54.4
Cpa.g.sc81.131 Carica papaya HOM05D005444 ORTHO05D006773 9.7e-41 170.6 126 65.1
CDE04G2637 Ceratophyllum demersum HOM05D005444 ORTHO05D006773 6.3e-40 167.9 155 51.6
DCAR_005353 Daucus carota HOM05D005444 ORTHO05D006773 6.3e-40 167.9 103 73.8
FAN25G3546 Fragaria x ananassa HOM05D005444 ORTHO05D006773 5.3e-39 164.9 129 59.7
TPR.G1035 Trifolium pratense HOM05D005444 ORTHO05D006773 5.3e-39 164.9 161 51.6
SEGI_38540 Sequoiadendron giganteum HOM05D005444 ORTHO05D006773 1.4e-36 156.8 156 52.6
HPP92_009462 Vanilla planifolia HOM05D005444 ORTHO05D006773 4.2e-36 155.2 158 50.6
Dinv17019 Davidia involucrata HOM05D005444 ORTHO05D006773 9.4e-36 154.1 111 65.8
Dinv42967 Davidia involucrata HOM05D005444 ORTHO05D006773 9.4e-36 154.1 111 65.8
Dinv43132 Davidia involucrata HOM05D005444 ORTHO05D006773 9.4e-36 154.1 111 65.8
MELO3C020623.2 Cucumis melo HOM05D005444 ORTHO05D006773 2.1e-35 152.9 149 50.3
Nn2g13370 Nelumbo nucifera HOM05D005444 ORTHO05D006773 3.9e-34 148.7 89 77.5
Psat5g286680 Pisum sativum HOM05D005444 ORTHO05D006773 8.8e-34 147.5 151 53.6
Thecc.09G320000 Theobroma cacao HOM05D005444 ORTHO05D006773 1.5e-33 146.7 161 50.3
Prupe.6G074400 Prunus persica HOM05D005444 ORTHO05D006773 2.4e-31 139.4 103 65.0
CiPaw.13G092700 Carya illinoinensis HOM05D005444 ORTHO05D006773 1.6e-30 136.7 106 65.1
Duzib168G1171 Durio zibethinus HOM05D005444 ORTHO05D006773 3.5e-30 135.6 156 46.8
Mapoly0050s0097 Marchantia polymorpha HOM05D005444 ORTHO05D006773 1.0e-29 134.0 158 44.3
Hund18899 Selenicereus undatus HOM05D005444 ORTHO05D006773 2.1e-27 126.3 108 61.1
unitig_747.g22037 Utricularia gibba HOM05D005444 ORTHO05D006773 3.0e-26 122.5 113 52.2
Ca_19148_v3 Cicer arietinum L. HOM05D005444 ORTHO05D006773 2.6e-25 119.4 106 55.7
AagrBONN_evm.TU.Sc2ySwM_368.577 Anthoceros agrestis HOM05D005444 ORTHO05D006773 2.2e-24 116.3 156 39.1
Thhalv10014435m.g Eutrema salsugineum HOM05D005444 ORTHO05D006773 2.0e-22 109.8 112 50.9
Pp3c1_24530 Physcomitrium patens HOM05D005444 ORTHO05D006773 3.5e-22 109.0 164 40.9
Pp3c14_5400 Physcomitrium patens HOM05D005444 ORTHO05D006773 5.9e-22 108.2 154 39.6
TPR.G27554 Trifolium pratense HOM05D005444 ORTHO05D006773 1.4e-18 97.1 71 62.0
Medtr4g064030 Medicago truncatula HOM05D005444 ORTHO05D006773 2.2e-16 89.7 134 39.6
TAR636G2897 Trochodendron aralioides HOM05D005444 ORTHO05D006773 3.1e-15 85.9 80 56.2
TPR.G27777 Trifolium pratense HOM05D005444 ORTHO05D006773 1.3e-13 80.5 57 57.9
Duzib170G0057 Durio zibethinus HOM05D005444 ORTHO05D006773 1.1e-12 77.4 86 46.5
COL.COLO4_35627 Corchorus olitorius HOM05D005444 ORTHO05D001950 1.4e-10 70.5 84 50.0
MCO07G449 Micromonas commoda HOM05D005444 ORTHO05D006773 1.3e-08 63.9 160 27.5


User provided reference genes

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