Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGSC0003DMG402029058 Solanum tuberosum HOM05D000004 ORTHO05D000002 9.0e-66 253.4 128 100.0
Sopen00g004920 Solanum pennellii HOM05D000004 ORTHO05D000002 5.5e-47 191.0 123 77.2
PGSC0003DMG400000962 Solanum tuberosum HOM05D006932 ORTHO05D014708 3.8e-16 88.6 103 51.5
Ca_10305_v3 Cicer arietinum L. HOM05D001134 ORTHO05D000002 1.2e-12 77.0 133 31.6
TWI15G0520 Tripterygium wilfordii HOM05D000004 ORTHO05D000002 9.8e-12 73.9 49 59.2
Ca_07639_v3 Cicer arietinum L. HOM05D000004 ORTHO05D000002 1.3e-11 73.6 136 32.4
Lalb_Chr24g0402721 Lupinus albus HOM05D000004 ORTHO05D000002 2.8e-11 72.4 122 32.0
Ca_11127_v3 Cicer arietinum L. HOM05D001650 ORTHO05D001592 4.8e-11 71.6 133 31.6
Ca_20427_v3 Cicer arietinum L. HOM05D000004 ORTHO05D000002 6.3e-11 71.2 123 33.3
Ca_12559_v3 Cicer arietinum L. HOM05D000004 ORTHO05D000002 1.4e-10 70.1 136 33.8
Ca_11845_v3 Cicer arietinum L. HOM05D000004 ORTHO05D000002 1.8e-10 69.7 52 48.1
Ca_11846_v3 Cicer arietinum L. HOM05D000004 ORTHO05D000002 1.8e-10 69.7 123 32.5
Ca_14712_v3 Cicer arietinum L. HOM05D000004 ORTHO05D000002 1.8e-10 69.7 52 48.1
Psat7g152800 Pisum sativum HOM05D000004 ORTHO05D000002 1.8e-10 69.7 133 33.8
Ca_07517_v3 Cicer arietinum L. HOM05D000004 ORTHO05D000002 2.4e-10 69.3 123 32.5
VMungo0464G1208 Vigna mungo HOM05D000004 ORTHO05D000002 2.4e-10 69.3 51 52.9
Ca_02743_v3 Cicer arietinum L. HOM05D000004 ORTHO05D000002 4.1e-10 68.6 136 30.9
Ca_07633_v3 Cicer arietinum L. HOM05D000004 ORTHO05D000002 4.1e-10 68.6 136 30.9
Ca_19490_v3 Cicer arietinum L. HOM05D000004 ORTHO05D000002 5.4e-10 68.2 133 30.1
Ca_16100_v3 Cicer arietinum L. HOM05D000004 ORTHO05D000002 1.2e-09 67.0 107 32.7
Ca_11906_v3 Cicer arietinum L. HOM05D000004 ORTHO05D000002 1.6e-09 66.6 121 32.2
Ca_22696_v3 Cicer arietinum L. HOM05D000004 ORTHO05D000002 2.0e-09 66.2 133 30.8
Ca_04545_v3 Cicer arietinum L. HOM05D000004 ORTHO05D000002 2.7e-09 65.9 51 45.1
Ca_12309_v3 Cicer arietinum L. HOM05D000004 ORTHO05D000002 2.7e-09 65.9 76 35.5
Ca_22822_v3 Cicer arietinum L. HOM05D003606 ORTHO05D000002 2.7e-09 65.9 76 35.5
Psat5g213280 Pisum sativum HOM05D000004 ORTHO05D000002 2.7e-09 65.9 127 31.5
Ca_07730_v3 Cicer arietinum L. HOM05D000004 ORTHO05D000002 3.5e-09 65.5 69 40.6
TPR.G6695 Trifolium pratense HOM05D000004 ORTHO05D000002 3.5e-09 65.5 51 47.1
Ca_10432_v3 Cicer arietinum L. HOM05D000004 ORTHO05D000002 4.5e-09 65.1 60 46.7
Ciclev10030074m.g Citrus clementina HOM05D000004 ORTHO05D000002 4.5e-09 65.1 119 29.4
Ca_12602_v3 Cicer arietinum L. HOM05D000836 ORTHO05D000002 5.9e-09 64.7 52 50.0
Ca_27450_v3 Cicer arietinum L. HOM05D000004 ORTHO05D000002 5.9e-09 64.7 101 31.7
Psat1g213840 Pisum sativum HOM05D000004 ORTHO05D000002 5.9e-09 64.7 88 38.6
VMungo0720G2664 Vigna mungo HOM05D000797 ORTHO05D007935 7.7e-09 64.3 103 35.9
Ca_12114_v3 Cicer arietinum L. HOM05D003122 ORTHO05D010195 1.0e-08 63.9 122 31.1
TPR.G31865 Trifolium pratense HOM05D000004 ORTHO05D000002 1.0e-08 63.9 49 49.0
Ca_08465_v3 Cicer arietinum L. HOM05D000004 ORTHO05D000002 1.3e-08 63.5 116 30.2
Ca_16129_v3 Cicer arietinum L. HOM05D000004 ORTHO05D000002 1.3e-08 63.5 97 34.0
Ca_28249_v3 Cicer arietinum L. HOM05D000290 ORTHO05D000002 1.3e-08 63.5 75 36.0
ClCG09G014290 Citrullus lanatus HOM05D000004 ORTHO05D000002 1.3e-08 63.5 128 27.3
TPR.G9173 Trifolium pratense HOM05D000004 ORTHO05D000002 1.3e-08 63.5 137 29.9
Ca_05108_v3 Cicer arietinum L. HOM05D006182 ORTHO05D007236 1.7e-08 63.2 134 35.1
VMungo1127G1769 Vigna mungo HOM05D003938 ORTHO05D004759 1.7e-08 63.2 49 49.0
ClCG06G010650 Citrullus lanatus HOM05D000004 ORTHO05D000002 2.2e-08 62.8 129 26.4
Psat0s1287g0080 Pisum sativum HOM05D000004 ORTHO05D000002 2.2e-08 62.8 129 31.0
Psat0s1991g0120 Pisum sativum HOM05D000004 ORTHO05D000002 2.2e-08 62.8 52 50.0
Ca_23810_v3 Cicer arietinum L. HOM05D003122 ORTHO05D000002 2.9e-08 62.4 109 33.0
ECA238G2583 Erigeron canadensis HOM05D000004 ORTHO05D000002 2.9e-08 62.4 56 44.6
Psat0s2723g0120 Pisum sativum HOM05D003114 ORTHO05D003519 2.9e-08 62.4 53 47.2
Psat3g172640 Pisum sativum HOM05D000028 ORTHO05D000390 2.9e-08 62.4 129 30.2
Ca_05816_v3 Cicer arietinum L. HOM05D003122 ORTHO05D000002 3.8e-08 62.0 49 46.9
Ciclev10018888m.g Citrus clementina HOM05D001982 ORTHO05D008035 3.8e-08 62.0 41 58.5
MELO3C028848.2 Cucumis melo HOM05D009641 ORTHO05D013069 3.8e-08 62.0 84 34.5
Psat5g016360 Pisum sativum HOM05D000004 ORTHO05D000002 3.8e-08 62.0 131 31.3
Psat5g155160 Pisum sativum HOM05D000004 ORTHO05D000002 3.8e-08 62.0 49 49.0
Psat7g007480 Pisum sativum HOM05D000004 ORTHO05D000002 3.8e-08 62.0 49 49.0
Psat7g066480 Pisum sativum HOM05D000004 ORTHO05D000002 3.8e-08 62.0 52 48.1
Ca_12127_v3 Cicer arietinum L. HOM05D000004 ORTHO05D000002 5.0e-08 61.6 124 29.8
Psat0s4384g0120 Pisum sativum HOM05D000004 ORTHO05D000002 5.0e-08 61.6 105 36.2
Psat2g032840 Pisum sativum HOM05D000004 ORTHO05D000002 5.0e-08 61.6 54 46.3
Psat4g137240 Pisum sativum HOM05D000004 ORTHO05D000002 5.0e-08 61.6 49 46.9
Sp3g28830 Schrenkiella parvula HOM05D000004 ORTHO05D000002 5.0e-08 61.6 112 30.4
Sopen05g015220 Solanum pennellii HOM05D000004 ORTHO05D000002 6.5e-08 61.2 133 30.1
Ca_19472_v3 Cicer arietinum L. HOM05D000004 ORTHO05D000002 8.5e-08 60.8 68 32.4
Psat4g053400 Pisum sativum HOM05D000004 ORTHO05D000002 8.5e-08 60.8 54 48.1
Psat6g208920 Pisum sativum HOM05D000004 ORTHO05D000002 8.5e-08 60.8 49 49.0
BcaB04g17630 Brassica carinata HOM05D008905 ORTHO05D000002 1.1e-07 60.5 52 44.2
ECA232G0044 Erigeron canadensis HOM05D000004 ORTHO05D000002 1.1e-07 60.5 52 46.2
ECA232G1905 Erigeron canadensis HOM05D000004 ORTHO05D000002 1.1e-07 60.5 51 43.1
VMungo0251G3747 Vigna mungo HOM05D003893 ORTHO05D005167 1.1e-07 60.5 100 35.0
VMungo1383G0727 Vigna mungo HOM05D000250 ORTHO05D002850 1.1e-07 60.5 46 54.3
Phvul.004G050550 Phaseolus vulgaris HOM05D000004 ORTHO05D000002 1.5e-07 60.1 105 27.6
Ca_14397_v3 Cicer arietinum L. HOM05D000004 ORTHO05D000002 1.9e-07 59.7 115 32.2
ClCG03G009890 Citrullus lanatus HOM05D000004 ORTHO05D000002 1.9e-07 59.7 126 26.2
Psat6g022920 Pisum sativum HOM05D000004 ORTHO05D000002 1.9e-07 59.7 49 44.9
VMungo0251G2087 Vigna mungo HOM05D009527 ORTHO05D010195 1.9e-07 59.7 116 30.2
Psat7g172320 Pisum sativum HOM05D000004 ORTHO05D000002 2.5e-07 59.3 49 42.9
Sp6g13440 Schrenkiella parvula HOM05D008905 ORTHO05D000002 2.5e-07 59.3 116 30.2
THA.LOC104815241 Tarenaya hassleriana HOM05D000004 ORTHO05D000002 2.5e-07 59.3 50 42.0
Hma1.2p1_0812F.1_g222280 Hydrangea macrophylla HOM05D000004 ORTHO05D000002 3.2e-07 58.9 77 36.4
Psat5g159360 Pisum sativum HOM05D000004 ORTHO05D000002 3.2e-07 58.9 63 42.9
VMungo0251G0994 Vigna mungo HOM05D002797 ORTHO05D010195 3.2e-07 58.9 49 46.9
VMungo0464G0875 Vigna mungo HOM05D003387 ORTHO05D005400 3.2e-07 58.9 125 27.2
BcaC02g11045 Brassica carinata HOM05D014061 ORTHO05D000002 4.2e-07 58.5 58 43.1
CANSAT54G0404 Cannabis sativa HOM05D000004 ORTHO05D000002 4.2e-07 58.5 49 46.9
Ca_03855_v3 Cicer arietinum L. HOM05D000004 ORTHO05D000002 4.2e-07 58.5 47 44.7
Ca_23727_v3 Cicer arietinum L. HOM05D000004 ORTHO05D000002 4.2e-07 58.5 120 30.8
ECA238G3110 Erigeron canadensis HOM05D000004 ORTHO05D000002 4.2e-07 58.5 54 46.3
Psat1g036880 Pisum sativum HOM05D000004 ORTHO05D000002 4.2e-07 58.5 49 44.9
Psat5g191920 Pisum sativum HOM05D000004 ORTHO05D000002 4.2e-07 58.5 49 46.9
Ah.09g237740 Amaranthus hybridus HOM05D016549 ORTHO05D000002 5.5e-07 58.2 67 41.8
CAN.G824.35 Capsicum annuum HOM05D000004 ORTHO05D000002 5.5e-07 58.2 105 27.6
CAN.G845.6 Capsicum annuum HOM05D000004 ORTHO05D000002 5.5e-07 58.2 105 27.6
ClCG06G009810 Citrullus lanatus HOM05D000004 ORTHO05D000002 5.5e-07 58.2 119 24.4
ECA233G5755 Erigeron canadensis HOM05D000004 ORTHO05D000002 5.5e-07 58.2 52 44.2
Phvul.001G091900 Phaseolus vulgaris HOM05D003122 ORTHO05D000002 5.5e-07 58.2 128 27.3
TAR481G0005 Trochodendron aralioides HOM05D000004 ORTHO05D000002 5.5e-07 58.2 63 30.2
Ca_12972_v3 Cicer arietinum L. HOM05D003122 ORTHO05D010195 7.2e-07 57.8 126 27.0
Phvul.004G009341 Phaseolus vulgaris HOM05D007358 ORTHO05D009117 7.2e-07 57.8 128 27.3
BcaC04g21337 Brassica carinata HOM05D014061 ORTHO05D000002 9.4e-07 57.4 58 43.1
TPR.G17488 Trifolium pratense HOM05D000004 ORTHO05D000002 9.4e-07 57.4 149 24.8
vmacro07154 Vaccinium macrocarpon HOM05D002389 ORTHO05D003227 9.4e-07 57.4 48 43.8
Ca_12969_v3 Cicer arietinum L. HOM05D000004 ORTHO05D000002 1.2e-06 57.0 51 39.2
ClCG11G009360 Citrullus lanatus HOM05D000004 ORTHO05D000002 1.2e-06 57.0 119 26.1
Lalb_Chr12g0204601 Lupinus albus HOM05D003122 ORTHO05D000002 1.2e-06 57.0 49 44.9
VMungo0720G1249 Vigna mungo HOM05D000002 ORTHO05D000047 1.2e-06 57.0 72 36.1
BcaB01g00892 Brassica carinata HOM05D014061 ORTHO05D000002 1.6e-06 56.6 67 41.8
Ca_06552_v3 Cicer arietinum L. HOM05D003122 ORTHO05D000002 1.6e-06 56.6 49 42.9
Ca_14374_v3 Cicer arietinum L. HOM05D003122 ORTHO05D000002 1.6e-06 56.6 48 45.8
ECA234G3749 Erigeron canadensis HOM05D000004 ORTHO05D000002 1.6e-06 56.6 52 44.2
Psat2g127640 Pisum sativum HOM05D000004 ORTHO05D000002 1.6e-06 56.6 65 41.5
Sp6g11780 Schrenkiella parvula HOM05D011239 ORTHO05D000002 1.6e-06 56.6 49 40.8
THA.LOC104801707 Tarenaya hassleriana HOM05D008905 ORTHO05D000002 1.6e-06 56.6 49 40.8
VMungo1383G2683 Vigna mungo HOM05D003122 ORTHO05D000002 1.6e-06 56.6 128 28.9
Atru.chr3.1983 Acer truncatum HOM05D000004 ORTHO05D000002 2.1e-06 56.2 108 26.9
CANSAT35G0070 Cannabis sativa HOM05D000004 ORTHO05D000002 2.1e-06 56.2 47 48.9
Carub.0001s3392 Capsella rubella HOM05D000004 ORTHO05D000002 2.1e-06 56.2 49 40.8
Ca_03249_v3 Cicer arietinum L. HOM05D003122 ORTHO05D000002 2.1e-06 56.2 97 29.9
Ca_07114_v3 Cicer arietinum L. HOM05D003122 ORTHO05D000002 2.1e-06 56.2 49 42.9
ClCG03G010050 Citrullus lanatus HOM05D016213 ORTHO05D000002 2.1e-06 56.2 127 21.3
ECA233G4737 Erigeron canadensis HOM05D000004 ORTHO05D000002 2.1e-06 56.2 81 30.9
Psat5g083560 Pisum sativum HOM05D000004 ORTHO05D000002 2.1e-06 56.2 129 27.9
TPR.G21966 Trifolium pratense HOM05D001021 ORTHO05D000894 2.1e-06 56.2 65 43.1
TAR643G0001 Trochodendron aralioides HOM05D000004 ORTHO05D000002 2.1e-06 56.2 51 43.1
Nn5g27115 Nelumbo nucifera HOM05D000004 ORTHO05D000002 2.7e-06 55.8 118 27.1
Psat0s3577g0080 Pisum sativum HOM05D000004 ORTHO05D000002 2.7e-06 55.8 49 40.8
SHI48351 Sapria himalayana HOM05D000004 ORTHO05D000002 2.7e-06 55.8 124 25.8
VMungo1215G1246 Vigna mungo HOM05D048760 ORTHO05D051604 2.7e-06 55.8 100 30.0
Ca_05479_v3 Cicer arietinum L. HOM05D000004 ORTHO05D000002 3.6e-06 55.5 47 40.4
Ca_16686_v3 Cicer arietinum L. HOM05D009527 ORTHO05D013850 3.6e-06 55.5 126 27.8
Ah.15g096030 Amaranthus hybridus HOM05D016549 ORTHO05D000002 4.7e-06 55.1 70 37.1
Ca_13622_v3 Cicer arietinum L. HOM05D000004 ORTHO05D000002 4.7e-06 55.1 117 26.5
Ca_19227_v3 Cicer arietinum L. HOM05D003122 ORTHO05D000002 4.7e-06 55.1 117 25.6
PSO478G3301 Papaver somniferum HOM05D000004 ORTHO05D000002 4.7e-06 55.1 50 42.0
Psat5g253680 Pisum sativum HOM05D000004 ORTHO05D000002 4.7e-06 55.1 43 55.8
Sp6g11810 Schrenkiella parvula HOM05D000004 ORTHO05D000002 4.7e-06 55.1 49 38.8
THA.LOC104809111 Tarenaya hassleriana HOM05D000004 ORTHO05D000002 4.7e-06 55.1 65 40.0
VMungo0331G1288 Vigna mungo HOM05D004910 ORTHO05D010195 4.7e-06 55.1 49 42.9
VMungo1080G1902 Vigna mungo HOM05D000054 ORTHO05D010195 4.7e-06 55.1 92 30.4
ECA233G4375 Erigeron canadensis HOM05D000004 ORTHO05D000002 6.1e-06 54.7 53 41.5
PSO384G1135 Papaver somniferum HOM05D000004 ORTHO05D000002 6.1e-06 54.7 130 30.8
SHI24712 Sapria himalayana HOM05D000004 ORTHO05D000002 6.1e-06 54.7 124 29.0
VMungo0647G1598 Vigna mungo HOM05D002051 ORTHO05D002041 6.1e-06 54.7 113 28.3
VMungo0720G2483 Vigna mungo HOM05D002038 ORTHO05D030727 6.1e-06 54.7 49 49.0
VMungo0720G2490 Vigna mungo HOM05D012939 ORTHO05D010195 6.1e-06 54.7 60 40.0
BcaC07g37276 Brassica carinata HOM05D008905 ORTHO05D000002 8.0e-06 54.3 49 40.8
BolC4t21987H Brassica oleracea HOM05D029412 ORTHO05D027750 8.0e-06 54.3 49 46.9
Ca_03006_v3 Cicer arietinum L. HOM05D003122 ORTHO05D000002 8.0e-06 54.3 48 43.8
Sed0022134 Sechium edule HOM05D000004 ORTHO05D000002 8.0e-06 54.3 141 22.0
VMungo0647G0580 Vigna mungo HOM05D000660 ORTHO05D010195 8.0e-06 54.3 112 30.4


User provided reference genes

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