Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGSC0003DMG402028595 Solanum tuberosum HOM05D000237 ORTHO05D000535 2.6e-68 261.9 131 100.0
Sopen01g042010 Solanum pennellii HOM05D000237 ORTHO05D000535 1.4e-61 239.6 127 95.3
Solyc01g098440.3 Solanum lycopersicum HOM05D000237 ORTHO05D000535 4.0e-61 238.0 127 94.5
CAN.G134.234 Capsicum annuum HOM05D000237 ORTHO05D000535 3.9e-48 194.9 120 80.8
Nitab4.5_0000245g0300 Nicotiana tabacum HOM05D000237 ORTHO05D000535 5.6e-47 191.0 120 78.3
Nitab4.5_0001903g0130 Nicotiana tabacum HOM05D000237 ORTHO05D000535 5.8e-44 181.0 124 73.4
Peaxi162Scf00434g00734 Petunia axillaris HOM05D000237 ORTHO05D000535 6.4e-35 151.0 120 65.8
Lj7A485G39 Lonicera japonica HOM05D000237 ORTHO05D000535 1.3e-32 143.3 125 60.0
Peaxi162Scf00165g00613 Petunia axillaris HOM05D000237 ORTHO05D000535 2.3e-32 142.5 120 60.8
vmacro19653 Vaccinium macrocarpon HOM05D000237 ORTHO05D000535 3.0e-32 142.1 122 61.5
Actinidia19808 Actinidia chinensis HOM05D000237 ORTHO05D000535 4.3e-31 138.3 121 57.9
CSS0021855 Camellia sinensis var. sinensis HOM05D000237 ORTHO05D000535 9.0e-29 130.6 120 56.7
CSS0004301 Camellia sinensis var. sinensis HOM05D000237 ORTHO05D000535 2.0e-28 129.4 120 55.8
Cc02_g32440 Coffea canephora HOM05D000237 ORTHO05D000535 1.4e-26 123.2 120 55.0
Eucgr.H04436 Eucalyptus grandis HOM05D000237 ORTHO05D000535 9.3e-26 120.6 117 55.6
TWI12G0068 Tripterygium wilfordii HOM05D000237 ORTHO05D000535 1.6e-25 119.8 121 52.9
CSS0025087 Camellia sinensis var. sinensis HOM05D000237 ORTHO05D000535 1.9e-23 112.8 113 52.2
TAR362G1331 Trochodendron aralioides HOM05D000237 ORTHO05D000535 1.9e-23 112.8 130 49.2
Atru.chr2.523 Acer truncatum HOM05D000237 ORTHO05D000535 2.4e-21 105.9 121 49.6
QL03p003658 Quercus lobata HOM05D000237 ORTHO05D000535 2.4e-21 105.9 121 50.4
HanXRQChr05g0158861 Helianthus annuus HOM05D000237 ORTHO05D000535 5.3e-21 104.8 124 47.6
Glyma.10G157500 Glycine max HOM05D000237 ORTHO05D000535 9.0e-21 104.0 121 48.8
Thecc.05G298300 Theobroma cacao HOM05D000237 ORTHO05D000535 1.2e-20 103.6 126 46.0
ClCG02G016150 Citrullus lanatus HOM05D000237 ORTHO05D000535 2.6e-20 102.4 121 46.3
Lalb_Chr21g0310801 Lupinus albus HOM05D000237 ORTHO05D000535 2.6e-20 102.4 126 46.8
Ca_10082_v3 Cicer arietinum L. HOM05D000237 ORTHO05D000535 3.4e-20 102.1 121 47.9
Glyma.20G231000 Glycine max HOM05D000237 ORTHO05D000535 7.6e-20 100.9 122 47.5
THA.LOC104802810 Tarenaya hassleriana HOM05D000237 ORTHO05D000535 1.0e-19 100.5 131 46.6
Sabra13G0028600 Salix brachista HOM05D000237 ORTHO05D000535 2.2e-19 99.4 121 46.3
Medtr1g082310 Medicago truncatula HOM05D000237 ORTHO05D000535 3.8e-19 98.6 121 47.1
MELO3C004315.2 Cucumis melo HOM05D000237 ORTHO05D000535 4.9e-19 98.2 121 45.5
Gorai.007G291900 Gossypium raimondii HOM05D000237 ORTHO05D000535 4.9e-19 98.2 126 42.9
Psat6g148640 Pisum sativum HOM05D000237 ORTHO05D000535 4.9e-19 98.2 124 46.0
Sed0007903 Sechium edule HOM05D000237 ORTHO05D000535 4.9e-19 98.2 122 45.1
TAR365G0606 Trochodendron aralioides HOM05D000237 ORTHO05D000535 6.5e-19 97.8 132 46.2
Sed0017167 Sechium edule HOM05D000237 ORTHO05D000535 8.4e-19 97.4 121 44.6
Duzib177G0950 Durio zibethinus HOM05D000237 ORTHO05D000535 1.1e-18 97.1 114 45.6
Gohir.D11G271333 Gossypium hirsutum HOM05D000237 ORTHO05D000535 1.1e-18 97.1 126 42.9
Lsat_1_v5_gn_5_39200 Lactuca sativa HOM05D000237 ORTHO05D000535 1.1e-18 97.1 121 48.8
Nn3g21206 Nelumbo nucifera HOM05D000237 ORTHO05D000535 1.9e-18 96.3 130 45.4
CiPaw.08G167800 Carya illinoinensis HOM05D000237 ORTHO05D000535 3.2e-18 95.5 121 47.9
Gohir.A11G261100 Gossypium hirsutum HOM05D000237 ORTHO05D000535 3.2e-18 95.5 126 41.3
Lalb_Chr02g0148451 Lupinus albus HOM05D000237 ORTHO05D000535 3.2e-18 95.5 125 48.0
PGR031G0808 Punica granatum HOM05D000237 ORTHO05D000535 3.2e-18 95.5 120 47.5
DCAR_001934 Daucus carota HOM05D001540 ORTHO05D001520 4.2e-18 95.1 120 43.3
Potri.013G028100 Populus trichocarpa HOM05D000237 ORTHO05D000535 4.2e-18 95.1 122 45.9
TPR.G2761 Trifolium pratense HOM05D000237 ORTHO05D000535 4.2e-18 95.1 117 45.3
Haze_04259 Corylus avellana HOM05D000237 ORTHO05D000535 1.2e-17 93.6 120 47.5
Aqoxy5G00579 Aquilegia oxysepala HOM05D000237 ORTHO05D000535 2.1e-17 92.8 127 41.7
CsaV3_2G004830 Cucumis sativus L. HOM05D000237 ORTHO05D000535 2.7e-17 92.4 121 43.0
Cfa006526 Carpinus fangiana HOM05D000237 ORTHO05D000535 3.5e-17 92.0 121 47.1
Carub.0003s0438 Capsella rubella HOM05D000237 ORTHO05D000535 4.6e-17 91.7 138 41.3
Oeu012100.1 Olea europaea HOM05D000237 ORTHO05D000535 4.6e-17 91.7 81 59.3
BcaB04g19279 Brassica carinata HOM05D000237 ORTHO05D000535 6.0e-17 91.3 133 40.6
MD12G1226600 Malus domestica HOM05D000237 ORTHO05D000535 7.9e-17 90.9 127 44.1
CARHR079460 Cardamine hirsuta HOM05D000237 ORTHO05D000535 1.0e-16 90.5 131 40.5
MBI18_g28251_MAGBIO Magnolia biondii HOM05D000237 ORTHO05D000535 1.3e-16 90.1 131 42.0
AL3G15520 Arabidopsis lyrata HOM05D000237 ORTHO05D000535 3.0e-16 89.0 132 40.9
AT3G05140 Arabidopsis thaliana HOM05D000237 ORTHO05D000535 3.0e-16 89.0 137 40.9
Lj5g0017418 Lotus japonicus HOM05D000237 ORTHO05D000535 3.9e-16 88.6 122 44.3
Sc16g0008280 Simmondsia chinensis HOM05D000237 ORTHO05D000535 5.1e-16 88.2 129 42.6
FAN02G0932 Fragaria x ananassa HOM05D000237 ORTHO05D000535 8.7e-16 87.4 126 40.5
COL.COLO4_13556 Corchorus olitorius HOM05D001540 ORTHO05D001520 1.1e-15 87.0 123 40.7
MD04G1211700 Malus domestica HOM05D000237 ORTHO05D000535 1.1e-15 87.0 127 43.3
Aqoxy2G03176 Aquilegia oxysepala HOM05D000237 ORTHO05D000535 1.5e-15 86.7 128 39.8
BcaC01g04333 Brassica carinata HOM05D000237 ORTHO05D000535 1.9e-15 86.3 133 39.1
BolC3t16421H Brassica oleracea HOM05D000237 ORTHO05D000535 1.9e-15 86.3 133 39.1
Thhalv10021930m.g Eutrema salsugineum HOM05D000237 ORTHO05D000535 1.9e-15 86.3 134 38.8
C03p41380 Brassica napus HOM05D000237 ORTHO05D000535 2.5e-15 85.9 133 39.1
BraA03t12575Z Brassica rapa HOM05D000237 ORTHO05D000535 2.5e-15 85.9 133 39.1
FAN09G4188 Fragaria x ananassa HOM05D000237 ORTHO05D000535 2.5e-15 85.9 123 41.5
A03p34000 Brassica napus HOM05D000237 ORTHO05D000535 3.3e-15 85.5 133 39.1
FAN14G0858 Fragaria x ananassa HOM05D000237 ORTHO05D000535 3.3e-15 85.5 123 41.5
BcaC05g30000 Brassica carinata HOM05D000237 ORTHO05D000535 7.4e-15 84.3 136 39.0
FvH4_6g04990 Fragaria vesca HOM05D000237 ORTHO05D000535 7.4e-15 84.3 123 40.7
Ciclev10001189m.g Citrus clementina HOM05D000237 ORTHO05D000535 9.6e-15 84.0 121 43.0
FAN14G0612 Fragaria x ananassa HOM05D001540 ORTHO05D001520 9.6e-15 84.0 122 41.0
Manes.09G162000 Manihot esculenta HOM05D000237 ORTHO05D000535 1.6e-14 83.2 106 44.3
RcHm_v2.0_Chr3g0453501 Rosa chinensis HOM05D000237 ORTHO05D000535 1.6e-14 83.2 123 42.3
VMungo0720G1685 Vigna mungo HOM05D000237 ORTHO05D000535 2.8e-14 82.4 119 41.2
C05p62090 Brassica napus HOM05D000237 ORTHO05D000535 3.7e-14 82.0 136 38.2
BolC5t34867H Brassica oleracea HOM05D000237 ORTHO05D000535 3.7e-14 82.0 136 38.2
Sp3g03960 Schrenkiella parvula HOM05D000237 ORTHO05D000535 4.8e-14 81.6 134 36.6
A05p42430 Brassica napus HOM05D000237 ORTHO05D000535 1.1e-13 80.5 136 37.5
BraA05t23009Z Brassica rapa HOM05D000237 ORTHO05D000535 1.1e-13 80.5 136 37.5
ATR0580G178 Amborella trichopoda HOM05D000237 ORTHO05D000535 1.4e-13 80.1 110 43.6
FAN05G0677 Fragaria x ananassa HOM05D000237 ORTHO05D000535 1.4e-13 80.1 122 40.2
FAN05G4563 Fragaria x ananassa HOM05D000237 ORTHO05D000535 1.4e-13 80.1 122 40.2
Dinv22919 Davidia involucrata HOM05D000237 ORTHO05D000535 3.1e-13 79.0 98 43.9
PSO210G1489 Papaver somniferum HOM05D000237 ORTHO05D000535 3.1e-13 79.0 127 39.4
ECA246G3242 Erigeron canadensis HOM05D001540 ORTHO05D001520 6.9e-13 77.8 114 41.2
GSVIVG01017842001 Vitis vinifera HOM05D000237 ORTHO05D000535 1.2e-12 77.0 119 40.3
CANSAT54G1287 Cannabis sativa HOM05D000237 ORTHO05D000535 1.5e-12 76.6 119 40.3
CsaV3_6G005570 Cucumis sativus L. HOM05D000237 ORTHO05D000535 2.6e-12 75.9 133 36.1
Nn4g26111 Nelumbo nucifera HOM05D000237 ORTHO05D000535 3.4e-12 75.5 134 38.1
Sabra14G0102800 Salix brachista HOM05D000237 ORTHO05D000535 4.5e-12 75.1 117 39.3
ClCG06G005590 Citrullus lanatus HOM05D000237 ORTHO05D000535 7.6e-12 74.3 131 35.9
MELO3C021381.2 Cucumis melo HOM05D000237 ORTHO05D000535 7.6e-12 74.3 133 36.1
Hund21675 Selenicereus undatus HOM05D000237 ORTHO05D000535 7.6e-12 74.3 125 40.8
Aa31LG5G15500 Aethionema arabicum HOM05D000237 ORTHO05D000535 1.7e-11 73.2 134 38.8
Gohir.A11G296200 Gossypium hirsutum HOM05D000237 ORTHO05D000535 1.7e-11 73.2 121 36.4
Potri.014G136300 Populus trichocarpa HOM05D000237 ORTHO05D000535 2.2e-11 72.8 117 40.2
Gohir.D11G310700 Gossypium hirsutum HOM05D000237 ORTHO05D000535 3.8e-11 72.0 115 36.5
Gorai.007G343100 Gossypium raimondii HOM05D000237 ORTHO05D000535 3.8e-11 72.0 115 36.5
TWI73G0312 Tripterygium wilfordii HOM05D000237 ORTHO05D000535 3.8e-11 72.0 135 35.6
MBI19_g43993_MAGBIO Magnolia biondii HOM05D000237 ORTHO05D018005 5.0e-11 71.6 121 38.0
DCAR_002771 Daucus carota HOM05D000237 ORTHO05D000535 8.4e-11 70.9 120 40.0
PGR004G2809 Punica granatum HOM05D000237 ORTHO05D000535 1.4e-10 70.1 134 39.6
Migut.N01936 Erythranthe guttata HOM05D000237 ORTHO05D000535 2.5e-10 69.3 75 50.7
Eucgr.H03652 Eucalyptus grandis HOM05D000237 ORTHO05D000535 2.5e-10 69.3 131 35.9
Manes.03G188900 Manihot esculenta HOM05D000237 ORTHO05D000535 4.2e-10 68.6 138 37.7
QL06p006453 Quercus lobata HOM05D000237 ORTHO05D000535 9.3e-10 67.4 115 38.3
Sed0007437 Sechium edule HOM05D000237 ORTHO05D000535 9.3e-10 67.4 142 34.5
TWI09G1264 Tripterygium wilfordii HOM05D000237 ORTHO05D000535 9.3e-10 67.4 142 33.8
Glyma.03G241600 Glycine max HOM05D000237 ORTHO05D000535 1.2e-09 67.0 122 37.7
CANSAT25G2952 Cannabis sativa HOM05D000237 ORTHO05D000535 1.6e-09 66.6 114 38.6
Manes.05G071100 Manihot esculenta HOM05D000237 ORTHO05D000535 2.1e-09 66.2 117 36.8
DCAR_005828 Daucus carota HOM05D000237 ORTHO05D000535 2.7e-09 65.9 118 39.0
Lsat_1_v5_gn_5_188341 Lactuca sativa HOM05D000237 ORTHO05D000535 2.7e-09 65.9 131 35.1
HPP92_010629 Vanilla planifolia HOM05D000237 ORTHO05D000535 4.6e-09 65.1 128 38.3
ATR0579G009 Amborella trichopoda HOM05D000237 ORTHO05D000535 6.1e-09 64.7 88 42.0
MSTRG.18205 Avicennia marina HOM05D000237 ORTHO05D000535 6.1e-09 64.7 125 36.8
Cpa.g.sc9.140 Carica papaya HOM05D000237 ORTHO05D000535 6.1e-09 64.7 116 38.8
Potri.010G027301 Populus trichocarpa HOM05D000237 ORTHO05D000535 6.1e-09 64.7 159 33.3
Actinidia00067 Actinidia chinensis HOM05D000237 ORTHO05D000535 7.9e-09 64.3 133 36.8
CSS0005341 Camellia sinensis var. sinensis HOM05D000237 ORTHO05D000535 7.9e-09 64.3 125 39.2
Lj1g0018063 Lotus japonicus HOM05D000237 ORTHO05D000535 7.9e-09 64.3 123 38.2
SGA_v2.0_scaffold11G05779 Striga asiatica HOM05D000237 ORTHO05D000535 7.9e-09 64.3 122 35.2
CSS0022148 Camellia sinensis var. sinensis HOM05D000237 ORTHO05D000535 1.0e-08 63.9 130 34.6
CSS0024441 Camellia sinensis var. sinensis HOM05D000237 ORTHO05D000535 1.0e-08 63.9 130 34.6
Rhsim02G0015900 Rhododendron simsii HOM05D000237 ORTHO05D000535 1.0e-08 63.9 132 37.1
Sed0023622 Sechium edule HOM05D000237 ORTHO05D000535 1.8e-08 63.2 133 31.6
CANSAT78G1667 Cannabis sativa HOM05D000237 ORTHO05D000535 3.0e-08 62.4 143 35.7
RcHm_v2.0_Chr4g0420341 Rosa chinensis HOM05D000237 ORTHO05D000535 3.9e-08 62.0 136 34.6
Hund05364 Selenicereus undatus HOM05D000237 ORTHO05D000535 5.1e-08 61.6 125 34.4
Ah.04g154090 Amaranthus hybridus HOM05D000237 ORTHO05D000535 6.7e-08 61.2 128 36.7
arahy.Tifrunner.gnm1.ann1.76VW92 Arachis hypogaea HOM05D000237 ORTHO05D000535 8.7e-08 60.8 119 37.8
Nitab4.5_0000404g0080 Nicotiana tabacum HOM05D000237 ORTHO05D000535 1.1e-07 60.5 44 68.2
SalBow3G0717 Salvia bowleyana HOM05D000237 ORTHO05D000535 1.1e-07 60.5 88 42.0
GSVIVG01022021001 Vitis vinifera HOM05D000237 ORTHO05D000535 1.1e-07 60.5 110 40.0
Actinidia32377 Actinidia chinensis HOM05D000237 ORTHO05D000535 1.5e-07 60.1 132 34.1
Cc01_g19930 Coffea canephora HOM05D000237 ORTHO05D000535 1.5e-07 60.1 122 35.2
Lj2C1181T4 Lonicera japonica HOM05D000237 ORTHO05D000535 1.5e-07 60.1 116 42.2
Lj2C1220T5 Lonicera japonica HOM05D000237 ORTHO05D000535 1.5e-07 60.1 116 42.2
Sabra10G0013200 Salix brachista HOM05D000237 ORTHO05D000535 1.9e-07 59.7 140 34.3
Gohir.A11G119300 Gossypium hirsutum HOM05D000237 ORTHO05D000535 3.3e-07 58.9 121 38.0
TPR.G18044 Trifolium pratense HOM05D000237 ORTHO05D000535 3.3e-07 58.9 103 35.9
Psat1g186120 Pisum sativum HOM05D000237 ORTHO05D000535 4.3e-07 58.5 135 31.9
arahy.Tifrunner.gnm1.ann1.N9YH96 Arachis hypogaea HOM05D000237 ORTHO05D000535 5.7e-07 58.2 105 37.1
arahy.Tifrunner.gnm1.ann1.UG0RNA Arachis hypogaea HOM05D000237 ORTHO05D000535 5.7e-07 58.2 105 37.1
EL10Ac4g09290 Beta vulgaris HOM05D000237 ORTHO05D000535 5.7e-07 58.2 122 32.0
Phvul.007G183000 Phaseolus vulgaris HOM05D000237 ORTHO05D000535 5.7e-07 58.2 74 43.2
Prupe.1G145600 Prunus persica HOM05D000237 ORTHO05D000535 5.7e-07 58.2 142 31.0
HanXRQChr01g0003191 Helianthus annuus HOM05D000237 ORTHO05D000535 7.4e-07 57.8 123 35.8
Sopen09g029070 Solanum pennellii HOM05D000237 ORTHO05D000535 7.4e-07 57.8 122 36.1
AUR62043020 Chenopodium quinoa HOM05D000237 ORTHO05D000535 9.7e-07 57.4 99 38.4
CiPaw.01G156000 Carya illinoinensis HOM05D000237 ORTHO05D000535 1.3e-06 57.0 118 35.6
FAN20G0255 Fragaria x ananassa HOM05D000237 ORTHO05D000535 1.3e-06 57.0 117 35.9
PGR119G1790 Punica granatum HOM05D000237 ORTHO05D000535 1.3e-06 57.0 126 35.7
AUR62041202 Chenopodium quinoa HOM05D000237 ORTHO05D000535 1.6e-06 56.6 99 37.4
FAN27G2902 Fragaria x ananassa HOM05D000237 ORTHO05D000535 1.6e-06 56.6 117 35.9
Hma1.2p1_0257F.1_g104000 Hydrangea macrophylla HOM05D000237 ORTHO05D000535 1.6e-06 56.6 122 34.4
Nitab4.5_0001323g0150 Nicotiana tabacum HOM05D000237 ORTHO05D000535 1.6e-06 56.6 126 33.3
Peaxi162Scf00006g03910 Petunia axillaris HOM05D000237 ORTHO05D000535 1.6e-06 56.6 122 34.4
arahy.Tifrunner.gnm1.ann1.LMW62K Arachis hypogaea HOM05D000237 ORTHO05D018483 2.2e-06 56.2 100 37.0
CAN.G1172.6 Capsicum annuum HOM05D000237 ORTHO05D000535 2.2e-06 56.2 125 37.6
ECA248G3104 Erigeron canadensis HOM05D000237 ORTHO05D000535 2.2e-06 56.2 133 33.8
Lj6g0021285 Lotus japonicus HOM05D000237 ORTHO05D000535 2.2e-06 56.2 135 30.4
MD16G1178300 Malus domestica HOM05D000237 ORTHO05D000535 2.2e-06 56.2 143 34.3
Sc19g0004760 Simmondsia chinensis HOM05D000237 ORTHO05D000535 2.2e-06 56.2 124 35.5
FvH4_2g24300 Fragaria vesca HOM05D000237 ORTHO05D000535 2.8e-06 55.8 117 35.0
FAN15G3762 Fragaria x ananassa HOM05D000237 ORTHO05D000535 2.8e-06 55.8 117 35.9
FAN24G3007 Fragaria x ananassa HOM05D000237 ORTHO05D000535 2.8e-06 55.8 117 35.0
MD13G1176500 Malus domestica HOM05D000237 ORTHO05D000535 2.8e-06 55.8 142 33.1
EL10Ac3g06517 Beta vulgaris HOM05D000237 ORTHO05D000535 3.7e-06 55.5 81 40.7
Lj1C41T13 Lonicera japonica HOM05D000237 ORTHO05D000535 3.7e-06 55.5 123 34.1
Glyma.13G212600 Glycine max HOM05D000237 ORTHO05D000535 4.8e-06 55.1 129 31.0
Nitab4.5_0006816g0030 Nicotiana tabacum HOM05D000237 ORTHO05D000535 4.8e-06 55.1 126 32.5
Gorai.007G133000 Gossypium raimondii HOM05D000237 ORTHO05D000535 6.3e-06 54.7 120 33.3
MBI19_g44449_MAGBIO Magnolia biondii HOM05D000237 ORTHO05D000535 6.3e-06 54.7 95 36.8
MD03G1272700 Malus domestica HOM05D000237 ORTHO05D000535 6.3e-06 54.7 121 37.2
PGSC0003DMG400003813 Solanum tuberosum HOM05D000237 ORTHO05D000535 8.2e-06 54.3 125 35.2


User provided reference genes

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