Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGSC0003DMG402027528 Solanum tuberosum HOM05D003737 ORTHO05D004640 5.4e-254 880.6 464 100.0
Sopen01g040480 Solanum pennellii HOM05D003737 ORTHO05D004640 3.3e-243 844.7 465 96.1
Solyc01g096780.4 Solanum lycopersicum HOM05D003737 ORTHO05D004640 5.6e-243 844.0 469 94.9
Peaxi162Scf00220g00010 Petunia axillaris HOM05D003737 ORTHO05D004640 1.1e-203 713.4 462 80.1
Nitab4.5_0002687g0030 Nicotiana tabacum HOM05D003737 ORTHO05D004640 3.8e-199 698.4 466 81.1
Nitab4.5_0004903g0010 Nicotiana tabacum HOM05D003737 ORTHO05D004640 2.5e-198 695.7 464 80.2
CAN.G134.41 Capsicum annuum HOM05D003737 ORTHO05D004640 5.4e-153 545.0 308 89.3
Oeu013042.2 Olea europaea HOM05D003737 ORTHO05D004640 1.8e-124 450.3 503 54.1
Lj9C660G5 Lonicera japonica HOM05D003737 ORTHO05D004640 9.3e-121 438.0 473 55.8
Dinv20457 Davidia involucrata HOM05D003737 ORTHO05D004640 1.9e-118 430.3 484 54.5
MSTRG.20485 Avicennia marina HOM05D003737 ORTHO05D004640 1.7e-114 417.2 469 53.7
Atru.chr12.1119 Acer truncatum HOM05D003737 ORTHO05D004640 5.0e-114 415.6 472 53.4
Actinidia31420 Actinidia chinensis HOM05D003737 ORTHO05D004640 5.0e-114 415.6 474 52.7
Lj3g0019804 Lotus japonicus HOM05D003737 ORTHO05D004640 1.9e-113 413.7 472 50.8
Actinidia12270 Actinidia chinensis HOM05D003737 ORTHO05D004640 2.5e-113 413.3 474 51.7
Glyma.13G185300 Glycine max HOM05D003737 ORTHO05D004640 5.5e-113 412.1 470 51.9
Hma1.2p1_0233F.1_g098040 Hydrangea macrophylla HOM05D003737 ORTHO05D004640 7.2e-113 411.8 476 52.7
CSS0038854 Camellia sinensis var. sinensis HOM05D003737 ORTHO05D004640 1.6e-112 410.6 474 52.3
CSS0046027 Camellia sinensis var. sinensis HOM05D003737 ORTHO05D004640 1.6e-112 410.6 474 52.3
Eucgr.J00319 Eucalyptus grandis HOM05D003737 ORTHO05D004640 2.1e-112 410.2 472 52.8
Rhsim07G0072700 Rhododendron simsii HOM05D003737 ORTHO05D004640 1.0e-111 407.9 467 51.6
Prupe.2G056900 Prunus persica HOM05D003737 ORTHO05D004640 1.8e-111 407.1 468 50.9
Sc09g0004980 Simmondsia chinensis HOM05D003737 ORTHO05D004640 1.9e-110 403.7 493 49.5
Migut.B01171 Erythranthe guttata HOM05D003737 ORTHO05D004640 5.7e-110 402.1 465 54.0
PGR044G1985 Punica granatum HOM05D003737 ORTHO05D004640 9.7e-110 401.4 477 52.0
Cpa.g.sc33.135 Carica papaya HOM05D003737 ORTHO05D004640 1.3e-109 401.0 466 52.6
MD07G1053000 Malus domestica HOM05D003737 ORTHO05D004640 1.6e-109 400.6 467 49.3
Cfa010430 Carpinus fangiana HOM05D003737 ORTHO05D004640 2.2e-109 400.2 480 50.0
VMungo0647G1094 Vigna mungo HOM05D003737 ORTHO05D004640 6.3e-109 398.7 474 49.4
MD02G1266700 Malus domestica HOM05D003737 ORTHO05D004640 1.1e-108 397.9 469 49.3
ClCG08G008580 Citrullus lanatus HOM05D003737 ORTHO05D004640 2.4e-108 396.7 489 47.6
Gorai.010G212200 Gossypium raimondii HOM05D003737 ORTHO05D004640 2.4e-108 396.7 476 48.9
Gohir.D06G180700 Gossypium hirsutum HOM05D003737 ORTHO05D004640 4.1e-108 396.0 477 48.8
Sed0006452 Sechium edule HOM05D003737 ORTHO05D004640 4.1e-108 396.0 477 50.1
COL.COLO4_05028 Corchorus olitorius HOM05D003737 ORTHO05D004640 9.0e-108 394.8 478 50.2
QL04p051647 Quercus lobata HOM05D003737 ORTHO05D004640 1.5e-107 394.0 467 50.3
SGA_v2.0_scaffold182G39819 Striga asiatica HOM05D003737 ORTHO05D004640 1.5e-107 394.0 461 52.5
Gohir.A06G171900 Gossypium hirsutum HOM05D003737 ORTHO05D004640 2.6e-107 393.3 477 49.1
Manes.05G191000 Manihot esculenta HOM05D003737 ORTHO05D004640 2.6e-107 393.3 483 50.9
Glyma.15G223100 Glycine max HOM05D003737 ORTHO05D004640 3.4e-107 392.9 476 50.2
CANSAT56G0630 Cannabis sativa HOM05D003737 ORTHO05D004640 6.5e-106 388.7 473 49.7
CANSAT78G1307 Cannabis sativa HOM05D003737 ORTHO05D004640 8.5e-106 388.3 475 50.1
CsaV3_6G004570 Cucumis sativus L. HOM05D003737 ORTHO05D004640 1.1e-105 387.9 487 47.8
MELO3C019928.2 Cucumis melo HOM05D003737 ORTHO05D004640 1.9e-105 387.1 486 47.7
TWI34G0525 Tripterygium wilfordii HOM05D003737 ORTHO05D004640 1.9e-105 387.1 468 49.1
Duzib106G0442 Durio zibethinus HOM05D003737 ORTHO05D004640 3.2e-105 386.3 478 49.2
Thecc.10G131100 Theobroma cacao HOM05D003737 ORTHO05D004640 4.2e-105 386.0 475 49.1
Hund06832 Selenicereus undatus HOM05D003737 ORTHO05D004640 7.2e-105 385.2 499 46.9
CiPaw.13G048500 Carya illinoinensis HOM05D003737 ORTHO05D004640 1.2e-104 384.4 483 49.3
Potri.010G247900 Populus trichocarpa HOM05D003737 ORTHO05D004640 2.1e-104 383.6 463 50.5
Duzib128G0945 Durio zibethinus HOM05D003737 ORTHO05D004640 3.6e-104 382.9 475 48.4
SGA_v2.0_scaffold309G48158 Striga asiatica HOM05D003737 ORTHO05D004640 2.3e-103 380.2 466 50.0
Gorai.012G020700 Gossypium raimondii HOM05D003737 ORTHO05D004640 3.0e-103 379.8 481 49.1
Phvul.011G188500 Phaseolus vulgaris HOM05D003737 ORTHO05D004640 5.1e-103 379.0 466 48.9
Sabra10G0193400 Salix brachista HOM05D003737 ORTHO05D004640 5.1e-103 379.0 472 49.2
Gohir.A05G398100 Gossypium hirsutum HOM05D003737 ORTHO05D004640 6.7e-103 378.6 472 49.6
Gohir.D04G017900 Gossypium hirsutum HOM05D003737 ORTHO05D004640 6.7e-103 378.6 481 48.9
Sed0018433 Sechium edule HOM05D003737 ORTHO05D004640 1.1e-102 377.9 471 46.9
TWI32G0890 Tripterygium wilfordii HOM05D003737 ORTHO05D004640 3.3e-102 376.3 472 48.3
Psat4g141920 Pisum sativum HOM05D003737 ORTHO05D004640 2.8e-101 373.2 479 49.3
Lalb_Chr01g0007591 Lupinus albus HOM05D003737 ORTHO05D004640 3.7e-101 372.9 481 46.2
FAN06G1525 Fragaria x ananassa HOM05D003737 ORTHO05D004640 4.1e-100 369.4 462 48.5
AUR62041279 Chenopodium quinoa HOM05D003737 ORTHO05D004640 9.1e-100 368.2 471 47.1
Medtr8g043510 Medicago truncatula HOM05D003737 ORTHO05D004640 2.0e-99 367.1 475 48.0
FvH4_7g04870 Fragaria vesca HOM05D003737 ORTHO05D004640 1.3e-98 364.4 463 48.2
CiPaw.14G038200 Carya illinoinensis HOM05D003737 ORTHO05D004640 2.2e-98 363.6 483 47.8
DCAR_003288 Daucus carota HOM05D003737 ORTHO05D004640 5.0e-98 362.5 467 49.5
Sabra08G0006600 Salix brachista HOM05D003737 ORTHO05D004640 8.5e-98 361.7 474 48.1
MBI19_g24737_MAGBIO Magnolia biondii HOM05D003737 ORTHO05D004640 1.1e-97 361.3 476 47.9
Potri.008G010900 Populus trichocarpa HOM05D003737 ORTHO05D004640 1.9e-97 360.5 483 46.6
ECA240G2259 Erigeron canadensis HOM05D003737 ORTHO05D004640 2.5e-97 360.1 466 45.9
FAN10G1609 Fragaria x ananassa HOM05D003737 ORTHO05D004640 7.2e-97 358.6 463 47.9
Lalb_Chr03g0032471 Lupinus albus HOM05D003737 ORTHO05D004640 9.4e-97 358.2 483 45.1
EL10Ac4g08805 Beta vulgaris HOM05D003737 ORTHO05D004640 1.6e-96 357.5 467 45.6
Thhalv10013430m.g Eutrema salsugineum HOM05D003737 ORTHO05D004640 6.1e-96 355.5 475 45.9
RcHm_v2.0_Chr1g0330551 Rosa chinensis HOM05D003737 ORTHO05D004640 2.3e-95 353.6 460 47.0
TAR633G0465 Trochodendron aralioides HOM05D003737 ORTHO05D004640 3.0e-95 353.2 476 44.5
Haze_03384 Corylus avellana HOM05D003737 ORTHO05D004640 3.9e-95 352.8 608 39.5
C05p57390 Brassica napus HOM05D005327 ORTHO05D006655 5.1e-95 352.4 465 46.5
BolC5t34394H Brassica oleracea HOM05D003737 ORTHO05D004640 1.1e-94 351.3 466 46.6
vmacro13791 Vaccinium macrocarpon HOM05D003737 ORTHO05D004640 2.0e-94 350.5 532 43.6
Aa31LG11G5690 Aethionema arabicum HOM05D003737 ORTHO05D004640 3.3e-94 349.7 468 45.3
BraA05t22639Z Brassica rapa HOM05D003737 ORTHO05D004640 4.4e-94 349.4 465 46.7
A05p38490 Brassica napus HOM05D005327 ORTHO05D006655 1.3e-93 347.8 465 46.9
PSO017G3614 Papaver somniferum HOM05D003737 ORTHO05D004640 1.3e-93 347.8 400 50.0
C09p71760 Brassica napus HOM05D003737 ORTHO05D004081 2.8e-93 346.7 461 46.6
Thhalv10020697m.g Eutrema salsugineum HOM05D003737 ORTHO05D004640 2.8e-93 346.7 474 45.6
TAR636G0393 Trochodendron aralioides HOM05D003737 ORTHO05D004640 2.8e-93 346.7 477 47.2
arahy.Tifrunner.gnm1.ann1.J916II Arachis hypogaea HOM05D003737 ORTHO05D004640 4.8e-93 345.9 479 46.3
CARHR085310 Cardamine hirsuta HOM05D003737 ORTHO05D004640 6.3e-93 345.5 466 45.3
arahy.Tifrunner.gnm1.ann1.3J71J7 Arachis hypogaea HOM05D003737 ORTHO05D004640 8.2e-93 345.1 479 46.6
BolC9t59927H Brassica oleracea HOM05D003737 ORTHO05D004081 1.1e-92 344.7 462 46.8
PSO675G8349 Papaver somniferum HOM05D003737 ORTHO05D004640 4.1e-92 342.8 490 43.3
Aa31LG3G3660 Aethionema arabicum HOM05D003737 ORTHO05D004640 1.6e-91 340.9 473 44.6
HanXRQChr03g0073711 Helianthus annuus HOM05D003737 ORTHO05D004640 1.6e-91 340.9 462 44.8
PSO170G6472 Papaver somniferum HOM05D003737 ORTHO05D004640 4.5e-91 339.3 374 49.5
Duzib128G0026 Durio zibethinus HOM05D003737 ORTHO05D004640 5.9e-91 339.0 406 48.3
TPR.G25035 Trifolium pratense HOM05D003737 ORTHO05D004640 1.7e-90 337.4 350 53.4
BraA10t45159Z Brassica rapa HOM05D003737 ORTHO05D004081 2.2e-90 337.0 462 45.2
Ah.04g162720 Amaranthus hybridus HOM05D000296 ORTHO05D000175 6.5e-90 335.5 522 41.4
AL3G22200 Arabidopsis lyrata HOM05D003737 ORTHO05D004640 1.9e-89 334.0 475 45.1
A10p31150 Brassica napus HOM05D003737 ORTHO05D004081 1.9e-89 334.0 462 45.0
Carub.0003s0996 Capsella rubella HOM05D003737 ORTHO05D004640 1.9e-89 334.0 471 45.6
Aqoxy2G00024 Aquilegia oxysepala HOM05D003737 ORTHO05D004640 5.5e-89 332.4 491 43.0
AL6G14700 Arabidopsis lyrata HOM05D003737 ORTHO05D004640 5.5e-89 332.4 472 45.3
PSO170G3077 Papaver somniferum HOM05D003737 ORTHO05D004640 5.5e-89 332.4 475 44.4
unitig_749.g13793 Utricularia gibba HOM05D003737 ORTHO05D004640 5.5e-89 332.4 439 45.6
AT3G10730 Arabidopsis thaliana HOM05D003737 ORTHO05D004640 7.2e-89 332.0 476 45.4
AL532U10020 Arabidopsis lyrata HOM05D003737 ORTHO05D004640 9.4e-89 331.6 474 44.9
RcHm_v2.0_Chr1g0324281 Rosa chinensis HOM05D003737 ORTHO05D004640 1.6e-88 330.9 463 44.5
PSO782G4010 Papaver somniferum HOM05D003737 ORTHO05D004640 2.7e-88 330.1 415 45.3
Sp6g37810 Schrenkiella parvula HOM05D003737 ORTHO05D004640 3.0e-87 326.6 465 43.2
Sp3g09060 Schrenkiella parvula HOM05D003737 ORTHO05D004640 4.0e-87 326.2 472 44.7
CARHR208270 Cardamine hirsuta HOM05D003737 ORTHO05D004640 2.0e-86 323.9 471 45.0
AT5G04990 Arabidopsis thaliana HOM05D003737 ORTHO05D004640 5.7e-86 322.4 468 43.4
SHI21216 Sapria himalayana HOM05D003737 ORTHO05D004640 2.8e-85 320.1 494 43.1
TWI63G1132 Tripterygium wilfordii HOM05D003737 ORTHO05D004640 1.1e-84 318.2 431 47.1
HanXRQChr09g0247521 Helianthus annuus HOM05D003737 ORTHO05D004640 3.1e-84 316.6 460 42.4
Carub.0006s0393 Capsella rubella HOM05D003737 ORTHO05D004640 7.0e-84 315.5 470 43.6
unitig_22.g5336 Utricularia gibba HOM05D003737 ORTHO05D004640 1.6e-83 314.3 461 44.9
CANSAT78G0409 Cannabis sativa HOM05D003737 ORTHO05D004640 5.9e-83 312.4 283 57.6
BcaB05g21740 Brassica carinata HOM05D003737 ORTHO05D004640 1.1e-81 308.1 468 42.7
ATR0307G049 Amborella trichopoda HOM05D003737 ORTHO05D004640 6.1e-80 302.4 480 41.9
THA.LOC104823158 Tarenaya hassleriana HOM05D003737 ORTHO05D004640 1.8e-79 300.8 468 42.5
HPP92_021189 Vanilla planifolia HOM05D003737 ORTHO05D004640 1.5e-78 297.7 403 44.2
Os05g0270200 Oryza sativa ssp. japonica HOM05D003737 ORTHO05D004640 4.4e-78 296.2 467 40.0
CDE09G1399 Ceratophyllum demersum HOM05D003737 ORTHO05D004640 7.5e-78 295.4 432 43.1
ECA236G2275 Erigeron canadensis HOM05D003737 ORTHO05D004640 1.4e-76 291.2 305 51.5
Os01g0267600 Oryza sativa ssp. japonica HOM05D003737 ORTHO05D004640 9.5e-73 278.5 367 42.8
Zm00001eb128110 Zea mays HOM05D003737 ORTHO05D004640 2.7e-72 276.9 444 39.6
Zm00001eb233650 Zea mays HOM05D003737 ORTHO05D004640 2.7e-72 276.9 472 39.4
Lsat_1_v5_gn_7_65181 Lactuca sativa HOM05D003737 ORTHO05D004640 1.3e-69 268.1 380 44.5
Ciclev10001582m.g Citrus clementina HOM05D003737 ORTHO05D004640 4.9e-69 266.2 376 44.4
Lsat_1_v5_gn_1_105000 Lactuca sativa HOM05D003737 ORTHO05D004640 6.3e-69 265.8 362 45.6
Lsat_1_v5_gn_1_105040 Lactuca sativa HOM05D003737 ORTHO05D004640 1.8e-68 264.2 377 43.2
BcaC06g32213 Brassica carinata HOM05D003737 ORTHO05D004640 1.6e-67 261.2 425 41.9
Ca_24114_v3 Cicer arietinum L. HOM05D003737 ORTHO05D004640 7.3e-65 252.3 375 44.5
vmacro23127 Vaccinium macrocarpon HOM05D003737 ORTHO05D002937 8.0e-64 248.8 384 40.9
FAN03G1506 Fragaria x ananassa HOM05D003737 ORTHO05D004640 5.7e-62 242.7 453 38.6
SEGI_05544 Sequoiadendron giganteum HOM05D003737 ORTHO05D004640 1.3e-61 241.5 475 36.6
CDE08G0077 Ceratophyllum demersum HOM05D003737 ORTHO05D004640 2.9e-61 240.4 305 45.6
SMO266G0096 Selaginella moellendorffii HOM05D003737 ORTHO05D004640 5.4e-60 236.1 308 40.9
SMO104G0002 Selaginella moellendorffii HOM05D003737 ORTHO05D004640 9.2e-60 235.3 308 40.9
DCAR_022276 Daucus carota HOM05D003737 ORTHO05D004640 1.6e-59 234.6 239 52.7
Mapoly0147s0033 Marchantia polymorpha HOM05D003737 ORTHO05D004640 2.0e-59 234.2 321 41.7
DCAR_022277 Daucus carota HOM05D003737 ORTHO05D004640 4.6e-59 233.0 212 59.9
unitig_26.g9749 Utricularia gibba HOM05D003737 ORTHO05D004640 3.6e-56 223.4 401 37.7
Nn6g33270 Nelumbo nucifera HOM05D003737 ORTHO05D004640 2.6e-54 217.2 382 40.3
Pp3c7_4170 Physcomitrium patens HOM05D003737 ORTHO05D004640 3.4e-54 216.9 493 35.1
Pp3c11_22530 Physcomitrium patens HOM05D003737 ORTHO05D004640 4.4e-54 216.5 464 36.2
SMO356G0438 Selaginella moellendorffii HOM05D003737 ORTHO05D004640 4.9e-53 213.0 310 40.6
GSVIVG01001935001 Vitis vinifera HOM05D003737 ORTHO05D004640 4.6e-51 206.5 145 71.7
SMO119G0482 Selaginella moellendorffii HOM05D003737 ORTHO05D004640 1.9e-49 201.1 295 37.6
PGR083G2251 Punica granatum HOM05D003737 ORTHO05D004640 2.5e-49 200.7 362 37.0
BcaC06g32214 Brassica carinata HOM05D003737 ORTHO05D004640 1.3e-45 188.3 343 38.8
QL93p0223_0017 Quercus lobata HOM05D003737 ORTHO05D004640 1.3e-45 188.3 397 33.5
DCAR_014025 Daucus carota HOM05D003737 ORTHO05D004640 4.1e-44 183.3 266 45.1
RcHm_v2.0_Chr2g0101681 Rosa chinensis HOM05D003737 ORTHO05D004640 2.1e-43 181.0 207 48.8
Lsat_1_v5_gn_4_103680 Lactuca sativa HOM05D003737 ORTHO05D004640 2.7e-43 180.6 195 51.8
BolC1t05361H Brassica oleracea HOM05D003737 ORTHO05D004640 3.5e-43 180.3 268 44.0
AagrBONN_evm.TU.Sc2ySwM_344.2065 Anthoceros agrestis HOM05D003737 ORTHO05D004640 4.6e-43 179.9 318 36.2
SEGI_23640 Sequoiadendron giganteum HOM05D003737 ORTHO05D004640 2.6e-38 164.1 310 34.2
HPP92_012444 Vanilla planifolia HOM05D003737 ORTHO05D004640 1.1e-36 158.7 359 35.1
Ciclev10003487m.g Citrus clementina HOM05D003737 ORTHO05D004640 1.1e-31 142.1 103 72.8
RcHm_v2.0_Chr2g0101131 Rosa chinensis HOM05D003737 ORTHO05D004640 2.4e-31 141.0 141 51.8
SGA_v2.0_scaffold195G40842 Striga asiatica HOM05D003737 ORTHO05D004640 7.6e-30 136.0 234 41.5
FvH4_1g13360 Fragaria vesca HOM05D003737 ORTHO05D004640 1.3e-26 125.2 207 39.6
AUR62034111 Chenopodium quinoa HOM05D003737 ORTHO05D004640 1.9e-25 121.3 97 61.9
MCO09G802 Micromonas commoda HOM05D003737 ORTHO05D004640 2.4e-23 114.4 195 39.5
PRCOL_00004494 Prasinoderma coloniale HOM05D003737 ORTHO05D004640 3.1e-23 114.0 198 36.4
Cfa015121 Carpinus fangiana HOM05D003737 ORTHO05D004640 1.5e-22 111.7 73 69.9
FAN23G2857 Fragaria x ananassa HOM05D003737 ORTHO05D004640 1.0e-18 99.0 191 35.1
C08p01570 Brassica napus HOM05D003737 ORTHO05D004640 1.4e-15 88.6 83 54.2
CAN.G481.43 Capsicum annuum HOM05D000879 ORTHO05D002043 1.4e-15 88.6 51 78.4
Thhalv10015457m.g Eutrema salsugineum HOM05D003737 ORTHO05D004640 4.0e-15 87.0 82 59.8
Phvul.007G106800 Phaseolus vulgaris HOM05D003737 ORTHO05D004640 6.9e-15 86.3 66 60.6
Atru.chr12.1692 Acer truncatum HOM05D003737 ORTHO05D004640 1.5e-14 85.1 57 71.9
Haze_10688 Corylus avellana HOM05D003737 ORTHO05D004640 8.7e-10 69.3 126 35.7
BcaC01g00775 Brassica carinata HOM05D056010 ORTHO05D039557 4.5e-06 57.0 34 76.5


User provided reference genes

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