Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGSC0003DMG400039700 Solanum tuberosum HOM05D006839 ORTHO05D007872 4.0e-75 284.6 139 100.0
PGSC0003DMG402026866 Solanum tuberosum HOM05D006839 ORTHO05D007872 4.0e-75 284.6 139 100.0
Sopen09g026780 Solanum pennellii HOM05D006839 ORTHO05D007872 8.5e-70 266.9 139 94.2
Solyc09g065040.1 Solanum lycopersicum HOM05D006839 ORTHO05D007872 7.2e-69 263.8 139 93.5
Nitab4.5_0001028g0040 Nicotiana tabacum HOM05D006839 ORTHO05D007872 1.6e-60 236.1 142 83.8
Nitab4.5_0007089g0020 Nicotiana tabacum HOM05D006839 ORTHO05D007872 1.8e-56 222.6 129 84.5
PGSC0003DMG400029246 Solanum tuberosum HOM05D006839 ORTHO05D007872 6.4e-41 171.0 85 96.5
CSS0016717 Camellia sinensis var. sinensis HOM05D006839 ORTHO05D007872 1.9e-40 169.5 137 59.1
CSS0014698 Camellia sinensis var. sinensis HOM05D006839 ORTHO05D007872 7.0e-40 167.5 137 58.4
Hma1.2p1_0257F.1_g103610 Hydrangea macrophylla HOM05D000265 ORTHO05D007872 1.6e-39 166.4 129 62.8
vmacro14927 Vaccinium macrocarpon HOM05D000265 ORTHO05D000161 2.7e-39 165.6 130 60.8
Atru.chr5.1418 Acer truncatum HOM05D006839 ORTHO05D007872 6.0e-39 164.5 130 60.8
SalBow4G2140 Salvia bowleyana HOM05D006839 ORTHO05D007872 3.9e-38 161.8 132 63.6
Oeu022880.1 Olea europaea HOM05D006839 ORTHO05D007872 1.2e-36 156.8 129 59.7
Gorai.007G136000 Gossypium raimondii HOM05D006839 ORTHO05D007872 2.1e-36 156.0 116 62.9
Glyma.10G025800 Glycine max HOM05D006839 ORTHO05D007872 3.6e-36 155.2 129 57.4
Lj1g0018770 Lotus japonicus HOM05D006839 ORTHO05D007872 3.6e-36 155.2 129 56.6
TAR636G2925 Trochodendron aralioides HOM05D006839 ORTHO05D007872 3.6e-36 155.2 115 63.5
Migut.D00285 Erythranthe guttata HOM05D006839 ORTHO05D007872 4.7e-36 154.8 131 58.0
CsaV3_6G037040 Cucumis sativus L. HOM05D006839 ORTHO05D007872 8.1e-36 154.1 136 56.6
Glyma.02G148000 Glycine max HOM05D006839 ORTHO05D007872 1.1e-35 153.7 122 57.4
ECA248G0593 Erigeron canadensis HOM05D006839 ORTHO05D007872 1.4e-35 153.3 115 63.5
Lsat_1_v5_gn_5_190060 Lactuca sativa HOM05D006839 ORTHO05D007872 1.4e-35 153.3 141 55.3
Gohir.D11G127300 Gossypium hirsutum HOM05D006839 ORTHO05D007872 1.8e-35 152.9 116 61.2
Gohir.D11G127350 Gossypium hirsutum HOM05D006839 ORTHO05D007872 1.8e-35 152.9 116 61.2
Aqoxy2G03292 Aquilegia oxysepala HOM05D006839 ORTHO05D007872 2.3e-35 152.5 130 55.4
Gohir.A11G122100 Gossypium hirsutum HOM05D006839 ORTHO05D007872 3.1e-35 152.1 116 60.3
TWI59G1109 Tripterygium wilfordii HOM05D006839 ORTHO05D007872 3.1e-35 152.1 136 54.4
Cpa.g.sc52.24 Carica papaya HOM05D006839 ORTHO05D007872 4.0e-35 151.8 135 54.8
Phvul.007G171000 Phaseolus vulgaris HOM05D006839 ORTHO05D007872 4.0e-35 151.8 128 55.5
VMungo0720G2173 Vigna mungo HOM05D006839 ORTHO05D007872 4.0e-35 151.8 122 58.2
Haze_04725 Corylus avellana HOM05D006839 ORTHO05D007872 5.2e-35 151.4 134 56.7
MELO3C014411.2 Cucumis melo HOM05D006839 ORTHO05D007872 6.8e-35 151.0 116 61.2
Eucgr.K03376 Eucalyptus grandis HOM05D006839 ORTHO05D007872 6.8e-35 151.0 120 60.0
COL.COLO4_09110 Corchorus olitorius HOM05D006839 ORTHO05D007872 1.2e-34 150.2 129 56.6
Duzib211G0653 Durio zibethinus HOM05D006839 ORTHO05D007872 1.2e-34 150.2 118 60.2
MBI19_g14316_MAGBIO Magnolia biondii HOM05D006839 ORTHO05D007872 1.2e-34 150.2 130 55.4
MBI19_g46647_MAGBIO Magnolia biondii HOM05D006839 ORTHO05D007872 1.2e-34 150.2 130 55.4
Potri.005G208400 Populus trichocarpa HOM05D006839 ORTHO05D007872 1.2e-34 150.2 119 59.7
TWI14G1288 Tripterygium wilfordii HOM05D006839 ORTHO05D007872 1.5e-34 149.8 131 55.0
MD11G1287200 Malus domestica HOM05D006839 ORTHO05D007872 2.6e-34 149.1 133 54.1
Ciclev10023291m.g Citrus clementina HOM05D006839 ORTHO05D007872 3.4e-34 148.7 130 55.4
Cc01_g19590 Coffea canephora HOM05D006839 ORTHO05D007872 4.4e-34 148.3 117 56.4
Glyma.19G155100 Glycine max HOM05D006839 ORTHO05D007872 4.4e-34 148.3 132 54.5
Phvul.001G150100 Phaseolus vulgaris HOM05D006839 ORTHO05D007872 7.5e-34 147.5 123 56.9
Prupe.8G242500 Prunus persica HOM05D006839 ORTHO05D007872 1.3e-33 146.7 136 51.5
FvH4_2g23730 Fragaria vesca HOM05D006839 ORTHO05D007872 1.7e-33 146.4 132 51.5
RcHm_v2.0_Chr6g0291211 Rosa chinensis HOM05D006839 ORTHO05D007872 2.2e-33 146.0 139 50.4
Actinidia24884 Actinidia chinensis HOM05D006839 ORTHO05D007872 3.7e-33 145.2 106 63.2
VMungo1383G1584 Vigna mungo HOM05D006839 ORTHO05D007872 3.7e-33 145.2 120 58.3
Manes.05G075300 Manihot esculenta HOM05D006839 ORTHO05D007872 8.3e-33 144.1 116 57.8
FAN24G3533 Fragaria x ananassa HOM05D006839 ORTHO05D007872 1.1e-32 143.7 132 50.8
Nn1g02187 Nelumbo nucifera HOM05D006839 ORTHO05D007872 9.2e-32 140.6 130 55.4
Medtr7g094760 Medicago truncatula HOM05D006839 ORTHO05D007872 3.5e-31 138.7 125 52.8
PGR119G0017 Punica granatum HOM05D006839 ORTHO05D007872 3.0e-30 135.6 132 50.8
Thecc.01G280800 Theobroma cacao HOM05D006839 ORTHO05D007872 3.9e-30 135.2 119 55.5
Sabra05G0158500 Salix brachista HOM05D006839 ORTHO05D007872 8.6e-30 134.0 110 56.4
CiPaw.08G104600 Carya illinoinensis HOM05D006839 ORTHO05D007872 1.9e-29 132.9 133 52.6
Zm00001eb305770 Zea mays HOM05D006839 ORTHO05D007872 1.9e-29 132.9 138 50.0
ATR0626G183 Amborella trichopoda HOM05D006839 ORTHO05D007872 2.5e-29 132.5 115 56.5
SalBow7G1292 Salvia bowleyana HOM05D006839 ORTHO05D007872 3.3e-29 132.1 132 53.8
Cfa006129 Carpinus fangiana HOM05D006839 ORTHO05D007872 9.5e-29 130.6 126 52.4
Sed0018644 Sechium edule HOM05D006839 ORTHO05D007872 9.5e-29 130.6 121 51.2
FAN15G1162 Fragaria x ananassa HOM05D006839 ORTHO05D007872 1.2e-28 130.2 125 49.6
QL12p022082 Quercus lobata HOM05D006839 ORTHO05D007872 6.2e-28 127.9 126 50.8
FAN27G2541 Fragaria x ananassa HOM05D006839 ORTHO05D007872 8.1e-28 127.5 130 47.7
Peaxi162Scf00681g00001 Petunia axillaris HOM05D006839 ORTHO05D007872 8.1e-28 127.5 138 49.3
FAN20G2906 Fragaria x ananassa HOM05D006839 ORTHO05D007872 1.8e-27 126.3 125 48.8
SEGI_06174 Sequoiadendron giganteum HOM05D006839 ORTHO05D007872 2.6e-26 122.5 133 46.6
Glyma.03G152600 Glycine max HOM05D006839 ORTHO05D007872 5.8e-26 121.3 120 50.0
CAN.G619.39 Capsicum annuum HOM05D006839 ORTHO05D007872 2.9e-25 119.0 132 48.5
Migut.N02162 Erythranthe guttata HOM05D006839 ORTHO05D007872 1.4e-24 116.7 129 42.6
PGSC0003DMG400045936 Solanum tuberosum HOM05D006839 ORTHO05D007872 1.9e-24 116.3 113 53.1
CAN.G619.36 Capsicum annuum HOM05D006839 ORTHO05D007872 2.4e-24 115.9 113 52.2
PGSC0003DMG400041475 Solanum tuberosum HOM05D006839 ORTHO05D007872 9.2e-24 114.0 126 49.2
PGSC0003DMG400046937 Solanum tuberosum HOM05D006839 ORTHO05D007872 2.1e-23 112.8 113 50.4
Migut.N02163 Erythranthe guttata HOM05D006839 ORTHO05D007872 2.7e-23 112.5 130 41.5
Rhsim01G0275200 Rhododendron simsii HOM05D006839 ORTHO05D007872 1.3e-22 110.2 109 54.1
HPP92_001336 Vanilla planifolia HOM05D006839 ORTHO05D007872 1.3e-22 110.2 136 42.6
Peaxi162Scf00681g00007 Petunia axillaris HOM05D006839 ORTHO05D007872 2.3e-22 109.4 131 48.1
CAN.G619.35 Capsicum annuum HOM05D006839 ORTHO05D007872 3.9e-22 108.6 105 54.3
SalBow6G4286 Salvia bowleyana HOM05D006839 ORTHO05D007872 3.9e-22 108.6 129 41.9
Solyc04g026140.1 Solanum lycopersicum HOM05D006839 ORTHO05D007872 1.1e-21 107.1 138 41.3
Nitab4.5_0006691g0050 Nicotiana tabacum HOM05D006839 ORTHO05D007872 1.9e-21 106.3 104 53.8
SalBow6G0334 Salvia bowleyana HOM05D006839 ORTHO05D007872 4.3e-21 105.1 136 39.7
Nitab4.5_0000771g0180 Nicotiana tabacum HOM05D006839 ORTHO05D007872 5.6e-21 104.8 135 48.1
SalBow6G6528 Salvia bowleyana HOM05D006839 ORTHO05D007872 7.3e-21 104.4 119 42.0
Nitab4.5_0006691g0070 Nicotiana tabacum HOM05D006839 ORTHO05D007872 6.2e-20 101.3 107 47.7
Nitab4.5_0009973g0050 Nicotiana tabacum HOM05D006839 ORTHO05D007872 1.1e-19 100.5 135 44.4
SalBow6G5378 Salvia bowleyana HOM05D006839 ORTHO05D007872 1.4e-19 100.1 135 40.0
Eucgr.A00826 Eucalyptus grandis HOM05D006839 ORTHO05D007872 4.0e-19 98.6 136 36.8
SMO364G0778 Selaginella moellendorffii HOM05D006839 ORTHO05D007872 5.2e-19 98.2 131 42.0
SalBow6G6538 Salvia bowleyana HOM05D006839 ORTHO05D007872 6.8e-19 97.8 136 36.0
SalBow6G2151 Salvia bowleyana HOM05D006839 ORTHO05D007872 8.9e-19 97.4 127 37.8
Eucgr.H00898 Eucalyptus grandis HOM05D006839 ORTHO05D007872 1.2e-18 97.1 132 41.7
Eucgr.L02237 Eucalyptus grandis HOM05D006839 ORTHO05D007872 1.5e-18 96.7 119 43.7
PGR083G1544 Punica granatum HOM05D006839 ORTHO05D007872 2.0e-18 96.3 129 39.5
Eucgr.L02238 Eucalyptus grandis HOM05D006839 ORTHO05D007872 4.4e-18 95.1 130 40.0
Nitab4.5_0000771g0190 Nicotiana tabacum HOM05D006839 ORTHO05D007872 1.3e-17 93.6 98 51.0
Eucgr.H01539 Eucalyptus grandis HOM05D006839 ORTHO05D007872 1.6e-15 86.7 131 38.2
Eucgr.A00847 Eucalyptus grandis HOM05D006839 ORTHO05D007872 2.7e-15 85.9 121 33.9
Actinidia21107 Actinidia chinensis HOM05D000265 ORTHO05D000161 6.0e-15 84.7 60 66.7
Peaxi162Scf00681g00002 Petunia axillaris HOM05D006839 ORTHO05D007872 5.1e-14 81.6 98 44.9
Nitab4.5_0000003g0350 Nicotiana tabacum HOM05D006839 ORTHO05D007872 1.9e-13 79.7 112 42.0
PGR084G0009 Punica granatum HOM05D006839 ORTHO05D007872 3.6e-12 75.5 137 29.9
PGR142G2474 Punica granatum HOM05D006839 ORTHO05D007872 3.6e-12 75.5 137 29.9
Eucgr.A00843 Eucalyptus grandis HOM05D006839 ORTHO05D007872 4.0e-11 72.0 114 33.3
Eucgr.L00883 Eucalyptus grandis HOM05D006839 ORTHO05D007872 9.0e-11 70.9 97 42.3
PGR142G4476 Punica granatum HOM05D006839 ORTHO05D007872 1.3e-09 67.0 133 30.8
PGR031G1999 Punica granatum HOM05D006839 ORTHO05D007872 3.2e-08 62.4 106 33.0
PGR083G0613 Punica granatum HOM05D006839 ORTHO05D007872 3.2e-08 62.4 113 31.9
TWI73G0617 Tripterygium wilfordii HOM05D006839 ORTHO05D007872 3.2e-08 62.4 114 35.1
Peaxi162Scf00681g00011 Petunia axillaris HOM05D006839 ORTHO05D007872 9.3e-08 60.8 82 43.9
PGR031G1100 Punica granatum HOM05D023640 ORTHO05D007872 9.3e-08 60.8 132 33.3
AagrBONN_evm.TU.Sc2ySwM_344.366 Anthoceros agrestis HOM05D006839 ORTHO05D007872 1.6e-07 60.1 127 29.9
AagrBONN_evm.TU.Sc2ySwM_344.1661 Anthoceros agrestis HOM05D058811 ORTHO05D019592 1.0e-06 57.4 111 32.4
Carub.0006s3315 Capsella rubella HOM05D000022 ORTHO05D000071 1.3e-06 57.0 46 54.3
SGA_v2.0_scaffold7G03889 Striga asiatica HOM05D000022 ORTHO05D000071 1.3e-06 57.0 43 55.8
CSS0048814 Camellia sinensis var. sinensis HOM05D000022 ORTHO05D000306 1.7e-06 56.6 57 49.1
Medtr6g055960 Medicago truncatula HOM05D000022 ORTHO05D010537 1.7e-06 56.6 46 52.2
Medtr6g057680 Medicago truncatula HOM05D000022 ORTHO05D010537 1.7e-06 56.6 46 50.0
Medtr6g463660 Medicago truncatula HOM05D000022 ORTHO05D010537 1.7e-06 56.6 46 50.0
TAR629G0888 Trochodendron aralioides HOM05D000022 ORTHO05D000306 1.7e-06 56.6 96 33.3
CARHR252350 Cardamine hirsuta HOM05D000022 ORTHO05D000071 2.3e-06 56.2 46 54.3
Gohir.A06G208400 Gossypium hirsutum HOM05D000022 ORTHO05D000071 3.9e-06 55.5 46 54.3
Gohir.D06G212650 Gossypium hirsutum HOM05D000022 ORTHO05D000071 3.9e-06 55.5 46 54.3
Gohir.D06G212700 Gossypium hirsutum HOM05D000022 ORTHO05D000071 3.9e-06 55.5 46 54.3
Gorai.010G253400 Gossypium raimondii HOM05D000022 ORTHO05D000071 3.9e-06 55.5 46 54.3
AagrBONN_evm.TU.Sc2ySwM_344.1663 Anthoceros agrestis HOM05D006839 ORTHO05D007872 5.1e-06 55.1 119 31.1
CSS0015008 Camellia sinensis var. sinensis HOM05D000022 ORTHO05D000306 5.1e-06 55.1 46 52.2
Oeu055471.1 Olea europaea HOM05D000022 ORTHO05D000744 5.1e-06 55.1 132 28.0
Glyma.09G151700 Glycine max HOM05D000022 ORTHO05D010537 8.7e-06 54.3 46 50.0
Medtr6g463400 Medicago truncatula HOM05D000022 ORTHO05D010537 8.7e-06 54.3 68 42.6


User provided reference genes

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