Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGSC0003DMG402026539 Solanum tuberosum HOM05D001970 ORTHO05D006581 1.8e-45 185.7 98 100.0
CAN.G644.24 Capsicum annuum HOM05D001970 ORTHO05D006581 1.6e-30 136.0 96 69.8
CAN.G644.23 Capsicum annuum HOM05D001970 ORTHO05D006581 7.0e-26 120.6 97 62.9
Peaxi162Scf00002g05423 Petunia axillaris HOM05D001970 ORTHO05D006581 1.0e-24 116.7 97 58.8
PGSC0003DMG400026540 Solanum tuberosum HOM05D001970 ORTHO05D006581 1.3e-24 116.3 98 59.2
Solyc11g066950.2 Solanum lycopersicum HOM05D001970 ORTHO05D006581 1.5e-23 112.8 98 58.2
Sopen11g026670 Solanum pennellii HOM05D001970 ORTHO05D006581 9.4e-23 110.2 98 56.1
MSTRG.12357 Avicennia marina HOM05D001970 ORTHO05D006581 2.7e-22 108.6 93 60.2
Gohir.A05G083300 Gossypium hirsutum HOM05D001970 ORTHO05D006581 2.7e-22 108.6 100 54.0
FAN25G0696 Fragaria x ananassa HOM05D001970 ORTHO05D006581 3.6e-22 108.2 96 57.3
SGA_v2.0_scaffold83G26424 Striga asiatica HOM05D001970 ORTHO05D006581 3.6e-22 108.2 99 56.6
Aqoxy4G02879 Aquilegia oxysepala HOM05D001970 ORTHO05D006581 4.7e-22 107.8 97 57.7
Duzib168G1330 Durio zibethinus HOM05D001970 ORTHO05D006581 6.1e-22 107.5 100 54.0
Gohir.D05G086300 Gossypium hirsutum HOM05D001970 ORTHO05D006581 6.1e-22 107.5 100 54.0
Cc01_g09730 Coffea canephora HOM05D001970 ORTHO05D006581 8.0e-22 107.1 100 58.0
Peaxi162Scf00002g00529 Petunia axillaris HOM05D001970 ORTHO05D006581 8.0e-22 107.1 97 54.6
FAN16G1916 Fragaria x ananassa HOM05D001970 ORTHO05D006581 1.0e-21 106.7 96 56.2
Gorai.009G087900 Gossypium raimondii HOM05D001970 ORTHO05D006581 1.0e-21 106.7 100 54.0
Duzib170G0409 Durio zibethinus HOM05D001970 ORTHO05D006581 1.4e-21 106.3 100 53.0
Oeu051618.1 Olea europaea HOM05D001970 ORTHO05D006581 2.3e-21 105.5 99 53.5
Peaxi162Scf00002g00534 Petunia axillaris HOM05D001970 ORTHO05D006581 2.3e-21 105.5 97 53.6
CSS0025337 Camellia sinensis var. sinensis HOM05D001970 ORTHO05D006581 3.0e-21 105.1 96 54.2
Gohir.A08G003750 Gossypium hirsutum HOM05D001970 ORTHO05D006581 3.0e-21 105.1 100 54.0
Gorai.004G008400 Gossypium raimondii HOM05D001970 ORTHO05D006581 3.0e-21 105.1 100 54.0
MSTRG.17724 Avicennia marina HOM05D001970 ORTHO05D006581 4.0e-21 104.8 100 53.0
HanXRQChr01g0016781 Helianthus annuus HOM05D001970 ORTHO05D006581 4.0e-21 104.8 96 52.1
Rhsim01G0207400 Rhododendron simsii HOM05D001970 ORTHO05D006581 4.0e-21 104.8 99 51.5
Actinidia07215 Actinidia chinensis HOM05D001970 ORTHO05D006581 5.2e-21 104.4 100 54.0
COL.COLO4_19307 Corchorus olitorius HOM05D001970 ORTHO05D006581 5.2e-21 104.4 100 54.0
FvH4_3g29640 Fragaria vesca HOM05D001970 ORTHO05D006581 5.2e-21 104.4 96 56.2
FAN11G0699 Fragaria x ananassa HOM05D001970 ORTHO05D006581 5.2e-21 104.4 96 56.2
Potri.009G148100 Populus trichocarpa HOM05D001970 ORTHO05D006581 6.7e-21 104.0 99 53.5
HanXRQChr11g0346641 Helianthus annuus HOM05D001970 ORTHO05D006581 8.8e-21 103.6 98 51.0
RcHm_v2.0_Chr5g0055001 Rosa chinensis HOM05D001970 ORTHO05D006581 8.8e-21 103.6 96 55.2
Thecc.09G290500 Theobroma cacao HOM05D001970 ORTHO05D006581 8.8e-21 103.6 100 52.0
Gohir.D08G014100 Gossypium hirsutum HOM05D001970 ORTHO05D006581 1.1e-20 103.2 100 53.0
MD03G1136000 Malus domestica HOM05D001970 ORTHO05D006581 1.5e-20 102.8 96 56.2
Lsat_1_v5_gn_1_62140 Lactuca sativa HOM05D001970 ORTHO05D006581 2.0e-20 102.4 96 51.0
Sabra04G0126300 Salix brachista HOM05D001970 ORTHO05D006581 2.6e-20 102.1 100 53.0
ECA248G3685 Erigeron canadensis HOM05D001970 ORTHO05D006581 4.4e-20 101.3 96 52.1
Migut.N02510 Erythranthe guttata HOM05D001970 ORTHO05D006581 4.4e-20 101.3 96 55.2
Nitab4.5_0006089g0070 Nicotiana tabacum HOM05D001970 ORTHO05D006581 5.7e-20 100.9 97 55.7
Nitab4.5_0011810g0030 Nicotiana tabacum HOM05D001970 ORTHO05D006581 5.7e-20 100.9 97 54.6
Oeu048489.1 Olea europaea HOM05D001970 ORTHO05D006581 5.7e-20 100.9 98 52.0
Prupe.6G120300 Prunus persica HOM05D001970 ORTHO05D006581 5.7e-20 100.9 96 53.1
EL10Ac9g21094 Beta vulgaris HOM05D001970 ORTHO05D006581 7.4e-20 100.5 96 50.0
Hma1.2p1_0695F.1_g204430 Hydrangea macrophylla HOM05D001970 ORTHO05D006581 7.4e-20 100.5 97 53.6
MD11G1158500 Malus domestica HOM05D001970 ORTHO05D006581 7.4e-20 100.5 96 54.2
QL01p013573 Quercus lobata HOM05D001970 ORTHO05D006581 7.4e-20 100.5 97 53.6
Ciclev10029614m.g Citrus clementina HOM05D001970 ORTHO05D006581 2.2e-19 99.0 97 52.6
Dinv29432 Davidia involucrata HOM05D001970 ORTHO05D006581 2.2e-19 99.0 100 52.0
Dinv12514 Davidia involucrata HOM05D001970 ORTHO05D006581 2.8e-19 98.6 96 51.0
Lj3g0026796 Lotus japonicus HOM05D001970 ORTHO05D006581 2.8e-19 98.6 95 53.7
TPR.G32359 Trifolium pratense HOM05D001970 ORTHO05D006581 2.8e-19 98.6 95 53.7
Atru.chr3.3363 Acer truncatum HOM05D001970 ORTHO05D006581 3.7e-19 98.2 99 48.5
Eucgr.J00434 Eucalyptus grandis HOM05D001970 ORTHO05D006581 3.7e-19 98.2 100 50.0
CiPaw.13G140300 Carya illinoinensis HOM05D001970 ORTHO05D006581 4.8e-19 97.8 100 50.0
TAR636G2116 Trochodendron aralioides HOM05D001970 ORTHO05D006581 4.8e-19 97.8 100 51.0
Potri.004G187500 Populus trichocarpa HOM05D001970 ORTHO05D006581 6.3e-19 97.4 100 52.0
SalBow3G0645 Salvia bowleyana HOM05D001970 ORTHO05D006581 6.3e-19 97.4 96 51.0
TWI31G0398 Tripterygium wilfordii HOM05D001970 ORTHO05D006581 1.4e-18 96.3 91 52.7
TAR633G0932 Trochodendron aralioides HOM05D001970 ORTHO05D006581 1.4e-18 96.3 100 52.0
Cfa010075 Carpinus fangiana HOM05D001970 ORTHO05D006581 1.8e-18 95.9 100 49.0
PGR119G0344 Punica granatum HOM05D001970 ORTHO05D006581 1.8e-18 95.9 96 51.0
Hund07680 Selenicereus undatus HOM05D001970 ORTHO05D006581 2.4e-18 95.5 96 46.9
vmacro14360 Vaccinium macrocarpon HOM05D001970 ORTHO05D006581 2.4e-18 95.5 84 56.0
Carub.0006s2032 Capsella rubella HOM05D001970 ORTHO05D006581 3.1e-18 95.1 98 49.0
Ah.01g004530 Amaranthus hybridus HOM05D001970 ORTHO05D006581 4.1e-18 94.7 96 43.8
AT5G22580 Arabidopsis thaliana HOM05D001970 ORTHO05D006581 4.1e-18 94.7 98 48.0
CARHR190970 Cardamine hirsuta HOM05D001970 ORTHO05D006581 4.1e-18 94.7 98 49.0
AL6G33610 Arabidopsis lyrata HOM05D001970 ORTHO05D006581 5.3e-18 94.4 98 48.0
MELO3C021447.2 Cucumis melo HOM05D001970 ORTHO05D006581 5.3e-18 94.4 96 50.0
CsaV3_6G014780 Cucumis sativus L. HOM05D001970 ORTHO05D006581 5.3e-18 94.4 96 50.0
DCAR_012170 Daucus carota HOM05D001970 ORTHO05D006581 5.3e-18 94.4 97 48.5
Manes.11G158200 Manihot esculenta HOM05D001970 ORTHO05D006581 5.3e-18 94.4 96 50.0
AUR62023923 Chenopodium quinoa HOM05D001970 ORTHO05D006581 7.0e-18 94.0 96 45.8
Nn2g14038 Nelumbo nucifera HOM05D001970 ORTHO05D006581 7.0e-18 94.0 100 50.0
TWI75G0459 Tripterygium wilfordii HOM05D001970 ORTHO05D006581 7.0e-18 94.0 96 50.0
MBI17_g19801_MAGBIO Magnolia biondii HOM05D001970 ORTHO05D006581 9.1e-18 93.6 100 47.0
Ca_19379_v3 Cicer arietinum L. HOM05D001970 ORTHO05D006581 1.2e-17 93.2 99 48.5
Sed0013424 Sechium edule HOM05D001970 ORTHO05D006581 1.2e-17 93.2 96 51.0
THA.LOC104799538 Tarenaya hassleriana HOM05D001970 ORTHO05D006581 1.2e-17 93.2 99 48.5
CANSAT54G1595 Cannabis sativa HOM05D001970 ORTHO05D006581 1.6e-17 92.8 96 49.0
AUR62038317 Chenopodium quinoa HOM05D001970 ORTHO05D006581 1.6e-17 92.8 96 46.9
ClCG02G021950 Citrullus lanatus HOM05D001970 ORTHO05D006581 1.6e-17 92.8 96 47.9
Medtr2g084985 Medicago truncatula HOM05D001970 ORTHO05D006581 1.6e-17 92.8 95 51.6
arahy.Tifrunner.gnm1.ann1.4XXP0Y Arachis hypogaea HOM05D001970 ORTHO05D006581 2.6e-17 92.0 95 51.6
Sc12g0004240 Simmondsia chinensis HOM05D001970 ORTHO05D006581 2.6e-17 92.0 96 44.8
Psat5g255760 Pisum sativum HOM05D001970 ORTHO05D006581 3.5e-17 91.7 95 50.5
Hund00766 Selenicereus undatus HOM05D001970 ORTHO05D006581 3.5e-17 91.7 96 45.8
Lalb_Chr24g0395181 Lupinus albus HOM05D001970 ORTHO05D006581 4.5e-17 91.3 99 48.5
Aa31LG1G13030 Aethionema arabicum HOM05D001970 ORTHO05D006581 5.9e-17 90.9 96 46.9
TPR.G15579 Trifolium pratense HOM05D001970 ORTHO05D006581 5.9e-17 90.9 99 48.5
Rhsim12G0094000 Rhododendron simsii HOM05D001970 ORTHO05D006581 7.7e-17 90.5 81 53.1
Sp6g22730 Schrenkiella parvula HOM05D001970 ORTHO05D006581 7.7e-17 90.5 97 46.4
BcaB08g36415 Brassica carinata HOM05D001970 ORTHO05D006581 1.0e-16 90.1 98 45.9
Glyma.11G188300 Glycine max HOM05D001970 ORTHO05D006581 1.0e-16 90.1 99 46.5
Psat7g190320 Pisum sativum HOM05D001970 ORTHO05D006581 1.0e-16 90.1 99 46.5
BcaC04g19590 Brassica carinata HOM05D001970 ORTHO05D006581 1.3e-16 89.7 97 46.4
C09p53960 Brassica napus HOM05D001970 ORTHO05D006581 1.3e-16 89.7 97 46.4
BolC9t58268H Brassica oleracea HOM05D001970 ORTHO05D006581 1.3e-16 89.7 97 46.4
THA.LOC104810906 Tarenaya hassleriana HOM05D001970 ORTHO05D006581 1.3e-16 89.7 96 46.9
A10p18300 Brassica napus HOM05D001970 ORTHO05D006581 1.7e-16 89.4 97 46.4
BraA10t43907Z Brassica rapa HOM05D001970 ORTHO05D006581 1.7e-16 89.4 97 46.4
BraA02t05667Z Brassica rapa HOM05D001970 ORTHO05D006581 2.2e-16 89.0 97 47.4
Lalb_Chr19g0136721 Lupinus albus HOM05D001970 ORTHO05D006581 2.2e-16 89.0 96 46.9
Sed0011225 Sechium edule HOM05D001970 ORTHO05D006581 2.9e-16 88.6 94 48.9
VMungo1080G0720 Vigna mungo HOM05D001970 ORTHO05D006581 2.9e-16 88.6 99 46.5
Ca_01674_v3 Cicer arietinum L. HOM05D001970 ORTHO05D006581 3.8e-16 88.2 95 48.4
Phvul.005G126400 Phaseolus vulgaris HOM05D001970 ORTHO05D006581 3.8e-16 88.2 99 45.5
PSO339G2368 Papaver somniferum HOM05D001970 ORTHO05D006581 5.0e-16 87.8 100 46.0
unitig_22.g5664 Utricularia gibba HOM05D001970 ORTHO05D006581 6.5e-16 87.4 96 46.9
PSO384G2868 Papaver somniferum HOM05D001970 ORTHO05D006581 8.5e-16 87.0 100 44.0
Glyma.13G318600 Glycine max HOM05D001970 ORTHO05D006581 1.1e-15 86.7 99 46.5
C02p11030 Brassica napus HOM05D000051 ORTHO05D000015 2.5e-15 85.5 97 45.4
BolC2t07174H Brassica oleracea HOM05D001970 ORTHO05D006581 2.5e-15 85.5 97 45.4
Thhalv10015069m.g Eutrema salsugineum HOM05D001970 ORTHO05D006581 2.5e-15 85.5 97 44.3
Manes.04G007800 Manihot esculenta HOM05D001970 ORTHO05D006581 2.5e-15 85.5 96 44.8
Os11g0150400 Oryza sativa ssp. japonica HOM05D001970 ORTHO05D006581 3.2e-15 85.1 96 42.7
Phvul.011G091300 Phaseolus vulgaris HOM05D001970 ORTHO05D006581 3.2e-15 85.1 99 43.4
Glyma.12G086100 Glycine max HOM05D001970 ORTHO05D006581 4.2e-15 84.7 96 42.7
Glyma.12G182300 Glycine max HOM05D001970 ORTHO05D006581 4.2e-15 84.7 99 45.5
PGR102G2963 Punica granatum HOM05D001970 ORTHO05D006581 5.5e-15 84.3 99 42.4
Lalb_Chr03g0027951 Lupinus albus HOM05D001970 ORTHO05D006581 7.2e-15 84.0 96 44.8
Glyma.01G075700 Glycine max HOM05D001970 ORTHO05D006581 9.4e-15 83.6 99 41.4
ClCG01G012610 Citrullus lanatus HOM05D001970 ORTHO05D006581 1.6e-14 82.8 96 41.7
CsaV3_1G014560 Cucumis sativus L. HOM05D001970 ORTHO05D006581 1.6e-14 82.8 98 39.8
THA.LOC104800551 Tarenaya hassleriana HOM05D001970 ORTHO05D006581 1.6e-14 82.8 90 46.7
Glyma.09G127900 Glycine max HOM05D001970 ORTHO05D006581 3.6e-14 81.6 99 41.4
Sed0015386 Sechium edule HOM05D001970 ORTHO05D006581 8.0e-14 80.5 96 39.6
MELO3C004785.2 Cucumis melo HOM05D001970 ORTHO05D006581 1.4e-13 79.7 99 37.4
CDE04G2325 Ceratophyllum demersum HOM05D001970 ORTHO05D006581 1.8e-13 79.3 100 41.0
Glyma.13G008100 Glycine max HOM05D001970 ORTHO05D006581 2.3e-13 79.0 99 40.4
arahy.Tifrunner.gnm1.ann1.XX1T89 Arachis hypogaea HOM05D001970 ORTHO05D006581 3.0e-13 78.6 95 48.4
arahy.Tifrunner.gnm1.ann1.7YIN5C Arachis hypogaea HOM05D001970 ORTHO05D006581 5.2e-13 77.8 96 43.8
arahy.Tifrunner.gnm1.ann1.86JG4M Arachis hypogaea HOM05D001970 ORTHO05D006581 5.2e-13 77.8 96 43.8
BNapus_Darmor_BZH_scaffold_38p00560 Brassica napus HOM05D001970 ORTHO05D006581 8.8e-13 77.0 101 42.6
ATR0820G029 Amborella trichopoda HOM05D001970 ORTHO05D006581 5.7e-12 74.3 97 35.1
Peaxi162Scf37203g00001 Petunia axillaris HOM05D001970 ORTHO05D006581 7.5e-12 73.9 63 58.7
Haze_23441 Corylus avellana HOM05D001970 ORTHO05D006581 2.4e-10 68.9 100 41.0
Mapoly0058s0001 Marchantia polymorpha HOM05D001970 ORTHO05D004069 3.8e-08 61.6 98 39.8
Potri.010G150900 Populus trichocarpa HOM05D001970 ORTHO05D004069 1.1e-07 60.1 99 39.4
Glyma.04G082200 Glycine max HOM05D001970 ORTHO05D004069 3.2e-07 58.5 99 39.4
BcaC09g48682 Brassica carinata HOM05D001970 ORTHO05D004069 9.4e-07 57.0 99 40.4
C01p46990 Brassica napus HOM05D001970 ORTHO05D004069 9.4e-07 57.0 99 40.4
BolC1t04667H Brassica oleracea HOM05D001970 ORTHO05D004069 9.4e-07 57.0 99 40.4
AUR62028155 Chenopodium quinoa HOM05D001970 ORTHO05D004069 9.4e-07 57.0 99 38.4
Ah.04g157230 Amaranthus hybridus HOM05D001970 ORTHO05D004069 1.2e-06 56.6 99 37.4
A01p37110 Brassica napus HOM05D001970 ORTHO05D004069 1.2e-06 56.6 99 40.4
Hund21091 Selenicereus undatus HOM05D001970 ORTHO05D004069 1.2e-06 56.6 98 38.8
Sc19g0000220 Simmondsia chinensis HOM05D001970 ORTHO05D004069 1.2e-06 56.6 98 39.8
PGR031G3476 Punica granatum HOM05D001970 ORTHO05D004069 1.6e-06 56.2 99 36.4
BcaB04g20854 Brassica carinata HOM05D001970 ORTHO05D004069 2.7e-06 55.5 99 40.4
C01p47010 Brassica napus HOM05D001970 ORTHO05D004069 2.7e-06 55.5 99 40.4
BolC1t04669H Brassica oleracea HOM05D001970 ORTHO05D004069 2.7e-06 55.5 99 40.4
BraA01t03770Z Brassica rapa HOM05D001970 ORTHO05D004069 2.7e-06 55.5 99 40.4
CSS0034239 Camellia sinensis var. sinensis HOM05D001970 ORTHO05D004069 2.7e-06 55.5 93 40.9
ClCG05G006690 Citrullus lanatus HOM05D001970 ORTHO05D004069 2.7e-06 55.5 93 34.4
Glyma.06G083900 Glycine max HOM05D001970 ORTHO05D004069 2.7e-06 55.5 100 38.0
BcaC09g48679 Brassica carinata HOM05D001970 ORTHO05D004069 3.6e-06 55.1 99 40.4
ClCG01G008350 Citrullus lanatus HOM05D001970 ORTHO05D004069 4.7e-06 54.7 93 35.5
FAN07G1061 Fragaria x ananassa HOM05D001970 ORTHO05D004069 4.7e-06 54.7 99 38.4
C01p46960 Brassica napus HOM05D001970 ORTHO05D004069 6.1e-06 54.3 98 38.8
CSS0044499 Camellia sinensis var. sinensis HOM05D001970 ORTHO05D004069 6.1e-06 54.3 93 37.6
CARHR092480 Cardamine hirsuta HOM05D001970 ORTHO05D004069 6.1e-06 54.3 94 41.5
Ciclev10006242m.g Citrus clementina HOM05D001970 ORTHO05D004069 6.1e-06 54.3 99 36.4
THA.LOC104820283 Tarenaya hassleriana HOM05D001970 ORTHO05D004069 6.1e-06 54.3 98 38.8
FvH4_4g20800 Fragaria vesca HOM05D001970 ORTHO05D004069 8.0e-06 53.9 99 36.4
Manes.04G118100 Manihot esculenta HOM05D001970 ORTHO05D004069 8.0e-06 53.9 99 35.4


User provided reference genes

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