Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGSC0003DMG400003164 Solanum tuberosum HOM05D007710 ORTHO05D004022 2.3e-53 211.8 98 100.0
PGSC0003DMG402026486 Solanum tuberosum HOM05D007710 ORTHO05D004022 2.3e-53 211.8 98 100.0
Solyc03g097200.3 Solanum lycopersicum HOM05D007710 ORTHO05D004022 1.9e-52 208.8 98 98.0
Sopen03g027960 Solanum pennellii HOM05D007710 ORTHO05D004022 2.9e-48 194.9 98 93.9
Nitab4.5_0000021g0800 Nicotiana tabacum HOM05D007710 ORTHO05D004022 2.0e-41 172.2 98 84.7
Nitab4.5_0004530g0090 Nicotiana tabacum HOM05D007710 ORTHO05D004022 4.5e-41 171.0 98 83.7
CAN.G1131.30 Capsicum annuum HOM05D007710 ORTHO05D004022 2.9e-40 168.3 98 78.6
Peaxi162Scf00516g00641 Petunia axillaris HOM05D007710 ORTHO05D004022 1.1e-39 166.4 84 86.9
FvH4_7g34150 Fragaria vesca HOM05D007710 ORTHO05D004022 1.6e-38 162.5 83 80.7
Phvul.011G019000 Phaseolus vulgaris HOM05D007710 ORTHO05D004022 2.7e-38 161.8 81 87.7
arahy.Tifrunner.gnm1.ann1.GY8AT6 Arachis hypogaea HOM05D007710 ORTHO05D004022 3.6e-38 161.4 78 87.2
TPR.G19627 Trifolium pratense HOM05D007710 ORTHO05D004022 4.6e-38 161.0 78 88.5
GSVIVG01024345001 Vitis vinifera HOM05D007710 ORTHO05D004022 6.1e-38 160.6 96 74.0
arahy.Tifrunner.gnm1.ann1.U0IDC3 Arachis hypogaea HOM05D007710 ORTHO05D004022 7.9e-38 160.2 78 85.9
Ciclev10033194m.g Citrus clementina HOM05D007710 ORTHO05D004022 7.9e-38 160.2 82 84.1
Glyma.12G016700 Glycine max HOM05D007710 ORTHO05D004022 7.9e-38 160.2 81 86.4
FAN03G2015 Fragaria x ananassa HOM05D007710 ORTHO05D004022 1.8e-37 159.1 83 78.3
TAR375G0377 Trochodendron aralioides HOM05D007710 ORTHO05D004022 1.8e-37 159.1 91 78.0
Potri.013G078866 Populus trichocarpa HOM05D007710 ORTHO05D004022 2.3e-37 158.7 80 83.8
CSS0005120 Camellia sinensis var. sinensis HOM05D007710 ORTHO05D004022 5.1e-37 157.5 82 79.3
CSS0038916 Camellia sinensis var. sinensis HOM05D007710 ORTHO05D004022 5.1e-37 157.5 82 79.3
RcHm_v2.0_Chr1g0384511 Rosa chinensis HOM05D007710 ORTHO05D004022 6.7e-37 157.1 87 77.0
Actinidia08760 Actinidia chinensis HOM05D007710 ORTHO05D004022 8.8e-37 156.8 78 83.3
Lj3g0011322 Lotus japonicus HOM05D007710 ORTHO05D004022 1.1e-36 156.4 79 84.8
ECA233G0318 Erigeron canadensis HOM05D007710 ORTHO05D004022 1.5e-36 156.0 98 69.4
Medtr4g478210 Medicago truncatula HOM05D007710 ORTHO05D004022 2.0e-36 155.6 77 85.7
Atru.chr12.1914 Acer truncatum HOM05D007710 ORTHO05D004022 3.3e-36 154.8 88 75.0
Gohir.A13G101700 Gossypium hirsutum HOM05D007710 ORTHO05D004022 4.3e-36 154.5 89 75.3
TWI32G0404 Tripterygium wilfordii HOM05D007710 ORTHO05D004022 4.3e-36 154.5 80 82.5
HPP92_014617 Vanilla planifolia HOM05D007710 ORTHO05D004022 4.3e-36 154.5 82 79.3
MD01G1238100 Malus domestica HOM05D007710 ORTHO05D004022 5.7e-36 154.1 78 84.6
Haze_00383 Corylus avellana HOM05D007710 ORTHO05D004022 7.4e-36 153.7 83 78.3
Duzib128G0150 Durio zibethinus HOM05D007710 ORTHO05D004022 7.4e-36 153.7 85 77.6
HanXRQChr04g0105361 Helianthus annuus HOM05D007710 ORTHO05D004022 9.7e-36 153.3 88 75.0
MD01G1238400 Malus domestica HOM05D007710 ORTHO05D004022 9.7e-36 153.3 78 84.6
Psat7g170120 Pisum sativum HOM05D007710 ORTHO05D004022 9.7e-36 153.3 78 84.6
Prupe.2G328300 Prunus persica HOM05D007710 ORTHO05D004022 9.7e-36 153.3 78 83.3
DCAR_009023 Daucus carota HOM05D007710 ORTHO05D004022 1.7e-35 152.5 96 70.8
FAN10G2135 Fragaria x ananassa HOM05D003442 ORTHO05D004005 1.7e-35 152.5 83 75.9
Manes.08G064400 Manihot esculenta HOM05D007710 ORTHO05D004022 1.7e-35 152.5 81 79.0
THA.LOC104805715 Tarenaya hassleriana HOM05D007710 ORTHO05D004022 1.7e-35 152.5 78 83.3
Thecc.05G219200 Theobroma cacao HOM05D007710 ORTHO05D004022 1.7e-35 152.5 87 75.9
PGR042G1372 Punica granatum HOM05D007710 ORTHO05D004022 2.2e-35 152.1 84 76.2
Sed0013213 Sechium edule HOM05D007710 ORTHO05D004022 2.2e-35 152.1 85 77.6
Cc02_g00160 Coffea canephora HOM05D007710 ORTHO05D004022 4.8e-35 151.0 78 82.1
Hund09805 Selenicereus undatus HOM05D007710 ORTHO05D004022 4.8e-35 151.0 80 81.2
PSO782G0287 Papaver somniferum HOM05D007710 ORTHO05D004022 6.3e-35 150.6 87 74.7
Cfa016067 Carpinus fangiana HOM05D003442 ORTHO05D004005 8.2e-35 150.2 81 76.5
Lsat_1_v5_gn_2_60801 Lactuca sativa HOM05D007710 ORTHO05D004022 8.2e-35 150.2 75 82.7
Aqoxy3G02299 Aquilegia oxysepala HOM05D007710 ORTHO05D004022 1.1e-34 149.8 91 73.6
Hma1.2p1_0649F.1_g195220 Hydrangea macrophylla HOM05D007710 ORTHO05D004022 1.1e-34 149.8 76 82.9
Manes.09G128500 Manihot esculenta HOM05D007710 ORTHO05D004022 1.4e-34 149.4 81 76.5
Aa31LG2G2200 Aethionema arabicum HOM05D007710 ORTHO05D004022 1.8e-34 149.1 79 79.7
PSO063G4155 Papaver somniferum HOM05D007710 ORTHO05D004022 1.8e-34 149.1 87 74.7
CiPaw.06G035400 Carya illinoinensis HOM05D007710 ORTHO05D004022 2.4e-34 148.7 88 73.9
Mapoly0120s0048 Marchantia polymorpha HOM05D007710 ORTHO05D004022 2.4e-34 148.7 78 79.5
Sp5g19360 Schrenkiella parvula HOM05D007710 ORTHO05D004022 6.9e-34 147.1 80 76.2
EL10Ac3g05053 Beta vulgaris HOM05D007710 ORTHO05D004022 9.1e-34 146.7 81 76.5
ATR0057G097 Amborella trichopoda HOM05D007710 ORTHO05D004022 1.2e-33 146.4 79 77.2
AT1G65000 Arabidopsis thaliana HOM05D007710 ORTHO05D004022 1.2e-33 146.4 80 77.5
BcaB03g15335 Brassica carinata HOM05D007710 ORTHO05D004022 1.2e-33 146.4 80 76.2
BraA07t30900Z Brassica rapa HOM05D007710 ORTHO05D004022 1.2e-33 146.4 77 79.2
Migut.F00935 Erythranthe guttata HOM05D007710 ORTHO05D004022 1.2e-33 146.4 82 79.3
A07p32740 Brassica napus HOM05D007710 ORTHO05D004022 1.5e-33 146.0 80 76.2
AUR62028202 Chenopodium quinoa HOM05D007710 ORTHO05D004022 2.0e-33 145.6 90 72.2
unitig_747.g21335 Utricularia gibba HOM05D007710 ORTHO05D004022 2.0e-33 145.6 87 73.6
CsaV3_2G036650 Cucumis sativus L. HOM05D007710 ORTHO05D004022 2.6e-33 145.2 77 80.5
Nn6g33555 Nelumbo nucifera HOM05D007710 ORTHO05D004022 2.6e-33 145.2 94 69.1
AL2G19620 Arabidopsis lyrata HOM05D007710 ORTHO05D004022 4.5e-33 144.4 80 75.0
Eucgr.A02986 Eucalyptus grandis HOM05D007710 ORTHO05D004022 5.9e-33 144.1 87 73.6
MELO3C021857.2 Cucumis melo HOM05D007710 ORTHO05D004022 7.7e-33 143.7 77 79.2
CARHR057330 Cardamine hirsuta HOM05D007710 ORTHO05D004022 1.7e-32 142.5 77 76.6
MD06G1024400 Malus domestica HOM05D007710 ORTHO05D004022 1.7e-32 142.5 78 78.2
CARHR056450 Cardamine hirsuta HOM05D007710 ORTHO05D004022 8.5e-32 140.2 77 75.3
BolC6t38987H Brassica oleracea HOM05D007710 ORTHO05D004022 1.1e-31 139.8 92 67.4
Pp3c5_4790 Physcomitrium patens HOM05D007710 ORTHO05D004022 9.4e-31 136.7 76 73.7
C06p38950 Brassica napus HOM05D007710 ORTHO05D004022 2.7e-30 135.2 92 65.2
Rhsim03G0223400 Rhododendron simsii HOM05D007710 ORTHO05D004022 7.9e-30 133.7 138 49.3
Ah.04g156350 Amaranthus hybridus HOM05D007710 ORTHO05D004022 1.5e-25 119.4 138 46.4
SMO347G0449 Selaginella moellendorffii HOM05D007710 ORTHO05D004022 3.0e-21 105.1 77 63.6
RcHm_v2.0_Chr2g0135851 Rosa chinensis HOM05D007710 ORTHO05D004022 1.3e-19 99.8 83 57.8
Glyma.11G108600 Glycine max HOM05D007710 ORTHO05D004022 5.3e-18 94.4 42 92.9
ClCG09G017200 Citrullus lanatus HOM05D007710 ORTHO05D004022 1.6e-17 92.8 186 31.7
Hma1.2p1_0649F.1_g195210 Hydrangea macrophylla HOM05D007710 ORTHO05D004022 2.0e-17 92.4 43 88.4
SalBow2G0781 Salvia bowleyana HOM05D007710 ORTHO05D004022 8.5e-16 87.0 41 87.8
COL.COLO4_15187 Corchorus olitorius HOM05D007710 ORTHO05D004022 3.2e-15 85.1 41 85.4
Os03g0857750 Oryza sativa ssp. japonica HOM05D007710 ORTHO05D004022 9.4e-15 83.6 42 81.0
Sc09g0007050 Simmondsia chinensis HOM05D007710 ORTHO05D004022 2.0e-12 75.9 42 73.8
FAN01G0952 Fragaria x ananassa HOM05D002657 ORTHO05D003059 3.4e-12 75.1 42 69.0
MSTRG.6 Avicennia marina HOM05D007710 ORTHO05D004022 2.2e-11 72.4 53 62.3
ECA238G3641 Erigeron canadensis HOM05D007710 ORTHO05D004022 3.7e-11 71.6 43 67.4
SalBow2G2426 Salvia bowleyana HOM05D007710 ORTHO05D004022 1.4e-10 69.7 46 63.0
QL09p021214 Quercus lobata HOM05D007710 ORTHO05D004022 2.4e-10 68.9 50 66.0
Dinv29135 Davidia involucrata HOM05D007710 ORTHO05D004022 5.4e-10 67.8 32 87.5
CiPaw.03G067200 Carya illinoinensis HOM05D007646 ORTHO05D004022 3.5e-09 65.1 79 40.5
Duzib133G1094 Durio zibethinus HOM05D007646 ORTHO05D004022 3.5e-09 65.1 79 40.5
AT5G38060 Arabidopsis thaliana HOM05D007646 ORTHO05D004022 4.5e-09 64.7 79 39.2
Glyma.02G091100 Glycine max HOM05D007646 ORTHO05D004022 4.5e-09 64.7 79 40.5
Carub.0005s1235 Capsella rubella HOM05D007646 ORTHO05D004022 5.9e-09 64.3 79 38.0
AL7G52880 Arabidopsis lyrata HOM05D007646 ORTHO05D004022 1.0e-08 63.5 79 38.0
ClCG05G010760 Citrullus lanatus HOM05D007646 ORTHO05D004022 1.0e-08 63.5 86 36.0
Haze_14207 Corylus avellana HOM05D007646 ORTHO05D004022 1.3e-08 63.2 79 40.5
CANSAT54G0187 Cannabis sativa HOM05D007646 ORTHO05D004022 1.7e-08 62.8 79 38.0
Hma1.2p1_0283F.1_g113630 Hydrangea macrophylla HOM05D007646 ORTHO05D004022 1.7e-08 62.8 79 39.2
Eucgr.F02813 Eucalyptus grandis HOM05D007646 ORTHO05D004022 2.2e-08 62.4 83 37.3
Os08g0364500 Oryza sativa ssp. japonica HOM05D007646 ORTHO05D004022 2.2e-08 62.4 92 38.0
Zm00001eb042800 Zea mays HOM05D007646 ORTHO05D004022 2.2e-08 62.4 79 39.2
Phvul.008G009900 Phaseolus vulgaris HOM05D007646 ORTHO05D004022 2.9e-08 62.0 79 38.0
QL07p035402 Quercus lobata HOM05D007646 ORTHO05D004022 2.9e-08 62.0 96 36.5
Hund13692 Selenicereus undatus HOM05D007646 ORTHO05D004022 2.9e-08 62.0 79 38.0
VMungo1383G0770 Vigna mungo HOM05D007646 ORTHO05D004022 2.9e-08 62.0 79 38.0
Aa31LG9G17280 Aethionema arabicum HOM05D004323 ORTHO05D004022 5.0e-08 61.2 93 36.6
Lj1g0016280 Lotus japonicus HOM05D007646 ORTHO05D004022 5.0e-08 61.2 77 39.0
Sp7g04020 Schrenkiella parvula HOM05D007646 ORTHO05D004022 5.0e-08 61.2 79 36.7
MSTRG.3534 Avicennia marina HOM05D007646 ORTHO05D004022 6.5e-08 60.8 98 32.7
HanXRQChr12g0375971 Helianthus annuus HOM05D007646 ORTHO05D004022 6.5e-08 60.8 79 36.7
HPP92_011530 Vanilla planifolia HOM05D007646 ORTHO05D004022 6.5e-08 60.8 90 35.6
arahy.Tifrunner.gnm1.ann1.27TPXA Arachis hypogaea HOM05D007646 ORTHO05D004022 8.5e-08 60.5 79 38.0
arahy.Tifrunner.gnm1.ann1.FGX6FG Arachis hypogaea HOM05D007646 ORTHO05D004022 8.5e-08 60.5 79 38.0
Thhalv10027987m.g Eutrema salsugineum HOM05D007646 ORTHO05D004022 8.5e-08 60.5 87 36.8
Gohir.A07G075950 Gossypium hirsutum HOM05D007646 ORTHO05D004022 8.5e-08 60.5 79 38.0
Lsat_1_v5_gn_3_83021 Lactuca sativa HOM05D007646 ORTHO05D004022 8.5e-08 60.5 79 36.7
THA.LOC104822453 Tarenaya hassleriana HOM05D007646 ORTHO05D004022 8.5e-08 60.5 79 36.7
Aqoxy3G00145 Aquilegia oxysepala HOM05D007646 ORTHO05D004022 1.1e-07 60.1 83 36.1
BcaB02g08021 Brassica carinata HOM05D007646 ORTHO05D004022 1.1e-07 60.1 79 36.7
BolC6t36994H Brassica oleracea HOM05D007646 ORTHO05D004022 1.1e-07 60.1 99 34.3
CARHR214680 Cardamine hirsuta HOM05D007646 ORTHO05D004022 1.1e-07 60.1 87 34.5
Ciclev10013088m.g Citrus clementina HOM05D007646 ORTHO05D004022 1.1e-07 60.1 84 38.1
Gohir.D07G080400 Gossypium hirsutum HOM05D007646 ORTHO05D004022 1.1e-07 60.1 79 38.0
Gorai.001G085500 Gossypium raimondii HOM05D007646 ORTHO05D004022 1.1e-07 60.1 79 38.0
BraA07t29660Z Brassica rapa HOM05D007646 ORTHO05D004022 1.5e-07 59.7 92 34.8
Manes.01G114800 Manihot esculenta HOM05D007646 ORTHO05D004022 1.5e-07 59.7 79 36.7
PSO478G0345 Papaver somniferum HOM05D007646 ORTHO05D004022 1.5e-07 59.7 77 37.7
ATR0326G025 Amborella trichopoda HOM05D007646 ORTHO05D004022 1.9e-07 59.3 77 35.1
BcaC08g44354 Brassica carinata HOM05D007646 ORTHO05D004022 1.9e-07 59.3 99 34.3
Psat3g096480 Pisum sativum HOM05D007646 ORTHO05D004022 1.9e-07 59.3 79 36.7
Prupe.3G151500 Prunus persica HOM05D007646 ORTHO05D004022 1.9e-07 59.3 83 36.1
Thecc.04G124000 Theobroma cacao HOM05D007646 ORTHO05D004022 1.9e-07 59.3 87 35.6
Cc07_g08290 Coffea canephora HOM05D007646 ORTHO05D004022 2.5e-07 58.9 79 36.7
TPR.G28547 Trifolium pratense HOM05D007646 ORTHO05D004022 2.5e-07 58.9 79 36.7
Cpa.g.sc116.10 Carica papaya HOM05D007646 ORTHO05D004022 3.2e-07 58.5 84 35.7
Manes.02G073800 Manihot esculenta HOM05D007646 ORTHO05D004022 3.2e-07 58.5 79 35.4
Potri.017G122500 Populus trichocarpa HOM05D007646 ORTHO05D004022 4.2e-07 58.2 90 34.4
PGSC0003DMG400010412 Solanum tuberosum HOM05D007646 ORTHO05D004022 4.2e-07 58.2 79 36.7
TAR629G1988 Trochodendron aralioides HOM05D007646 ORTHO05D004022 4.2e-07 58.2 98 33.7
vmacro05494 Vaccinium macrocarpon HOM05D007646 ORTHO05D004022 4.2e-07 58.2 79 35.4
FvH4_4g24890 Fragaria vesca HOM05D007646 ORTHO05D004022 5.5e-07 57.8 84 35.7
FAN07G2610 Fragaria x ananassa HOM05D007646 ORTHO05D004022 5.5e-07 57.8 84 35.7
FAN12G1679 Fragaria x ananassa HOM05D007646 ORTHO05D004022 5.5e-07 57.8 84 35.7
FAN17G0138 Fragaria x ananassa HOM05D007646 ORTHO05D004022 5.5e-07 57.8 84 35.7
RcHm_v2.0_Chr3g0493581 Rosa chinensis HOM05D007646 ORTHO05D004022 5.5e-07 57.8 84 35.7
Solyc02g063300.3 Solanum lycopersicum HOM05D007646 ORTHO05D004022 7.2e-07 57.4 79 35.4
Sopen02g014370 Solanum pennellii HOM05D007646 ORTHO05D004022 7.2e-07 57.4 79 35.4
SGA_v2.0_scaffold329G48872 Striga asiatica HOM05D007646 ORTHO05D004022 7.2e-07 57.4 90 33.3
Lalb_Chr10g0091581 Lupinus albus HOM05D007646 ORTHO05D004022 9.4e-07 57.0 79 36.7
Rhsim10G0078400 Rhododendron simsii HOM05D007646 ORTHO05D004022 9.4e-07 57.0 83 34.9
Migut.L00480 Erythranthe guttata HOM05D007646 ORTHO05D004022 1.2e-06 56.6 79 34.2
GSVIVG01030896001 Vitis vinifera HOM05D007646 ORTHO05D004022 1.2e-06 56.6 83 36.1
Atru.chr1.1768 Acer truncatum HOM05D007646 ORTHO05D004022 1.6e-06 56.2 83 34.9
Sed0004781 Sechium edule HOM05D007646 ORTHO05D004022 1.6e-06 56.2 89 32.6
TWI77G0633 Tripterygium wilfordii HOM05D007646 ORTHO05D004022 1.6e-06 56.2 97 32.0
DCAR_010731 Daucus carota HOM05D007646 ORTHO05D004022 2.7e-06 55.5 95 32.6
Sc11g0008560 Simmondsia chinensis HOM05D007646 ORTHO05D004022 3.6e-06 55.1 79 35.4
Pp3c20_8520 Physcomitrium patens HOM05D007646 ORTHO05D004022 4.7e-06 54.7 97 34.0
PSO017G6311 Papaver somniferum HOM05D007646 ORTHO05D004022 6.1e-06 54.3 95 31.6
Cfa007863 Carpinus fangiana HOM05D007646 ORTHO05D004022 8.0e-06 53.9 101 31.7


User provided reference genes

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