Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGSC0003DMG402026390 Solanum tuberosum HOM05D004795 ORTHO05D005518 2.3e-120 435.6 229 100.0
Sopen02g030830 Solanum pennellii HOM05D004795 ORTHO05D005518 5.4e-114 414.5 229 96.1
CAN.G625.30 Capsicum annuum HOM05D004795 ORTHO05D005518 4.8e-102 374.8 228 88.2
Nitab4.5_0000912g0060 Nicotiana tabacum HOM05D004795 ORTHO05D005518 1.0e-96 357.1 232 84.1
Nitab4.5_0004416g0090 Nicotiana tabacum HOM05D004795 ORTHO05D005518 9.1e-69 264.2 173 82.1
Cc07_g08730 Coffea canephora HOM05D004795 ORTHO05D005518 7.5e-63 244.6 237 62.4
Peaxi162Scf00394g00712 Petunia axillaris HOM05D004795 ORTHO05D005518 2.2e-62 243.0 181 75.1
MSTRG.3555 Avicennia marina HOM05D004795 ORTHO05D005518 3.2e-58 229.2 223 58.7
Oeu016627.1 Olea europaea HOM05D004795 ORTHO05D005518 1.2e-55 220.7 214 62.1
Oeu050378.1 Olea europaea HOM05D004795 ORTHO05D005518 4.5e-52 208.8 215 59.1
Solyc02g086140.2 Solanum lycopersicum HOM05D004795 ORTHO05D005518 1.5e-50 203.8 132 84.1
Cfa007915 Carpinus fangiana HOM05D004795 ORTHO05D005518 1.9e-50 203.4 233 58.8
Oeu039734.1 Olea europaea HOM05D004795 ORTHO05D005518 3.3e-50 202.6 235 57.9
Dinv33956 Davidia involucrata HOM05D001490 ORTHO05D001450 8.0e-49 198.0 200 58.0
QL02p051034 Quercus lobata HOM05D004795 ORTHO05D005518 1.5e-47 193.7 234 55.6
QL12p016552 Quercus lobata HOM05D004795 ORTHO05D005518 1.5e-47 193.7 234 55.6
Rhsim10G0068600 Rhododendron simsii HOM05D004795 ORTHO05D005518 1.7e-46 190.3 236 55.1
CiPaw.03G062800 Carya illinoinensis HOM05D004795 ORTHO05D005518 8.3e-46 188.0 236 55.5
Haze_14167 Corylus avellana HOM05D004795 ORTHO05D005518 4.1e-45 185.7 233 54.9
Manes.02G069600 Manihot esculenta HOM05D004795 ORTHO05D005518 1.2e-44 184.1 220 55.0
CiPaw.04G043000 Carya illinoinensis HOM05D004795 ORTHO05D005518 4.5e-44 182.2 236 53.8
TWI77G0518 Tripterygium wilfordii HOM05D004795 ORTHO05D005518 1.3e-43 180.6 232 53.0
DCAR_025909 Daucus carota HOM05D004795 ORTHO05D005518 2.3e-43 179.9 219 52.1
Migut.L00330 Erythranthe guttata HOM05D004795 ORTHO05D005518 3.9e-43 179.1 218 50.5
Lsat_1_v5_gn_4_154580 Lactuca sativa HOM05D004795 ORTHO05D005518 2.1e-41 173.3 219 53.4
TAR629G1480 Trochodendron aralioides HOM05D004795 ORTHO05D005518 1.8e-40 170.2 216 53.2
MD09G1253700 Malus domestica HOM05D004795 ORTHO05D005518 4.0e-40 169.1 241 51.5
MD17G1245500 Malus domestica HOM05D004795 ORTHO05D005518 4.0e-40 169.1 241 51.0
COL.COLO4_09348 Corchorus olitorius HOM05D004795 ORTHO05D005518 6.8e-40 168.3 238 50.0
TWI53G1522 Tripterygium wilfordii HOM05D004795 ORTHO05D005518 4.4e-39 165.6 232 50.9
CANSAT78G0274 Cannabis sativa HOM05D004795 ORTHO05D005518 2.2e-38 163.3 239 50.2
Prupe.3G143600 Prunus persica HOM05D004795 ORTHO05D005518 4.9e-38 162.2 240 52.5
Duzib133G0847 Durio zibethinus HOM05D004795 ORTHO05D005518 8.3e-38 161.4 237 51.5
Glyma.13G045200 Glycine max HOM05D004795 ORTHO05D005518 3.2e-37 159.5 236 50.8
PGR004G2449 Punica granatum HOM05D004795 ORTHO05D005518 3.2e-37 159.5 234 47.9
SGA_v2.0_scaffold115G32104 Striga asiatica HOM05D004795 ORTHO05D005518 5.4e-37 158.7 180 53.3
Nn3g17899 Nelumbo nucifera HOM05D004795 ORTHO05D005518 7.0e-37 158.3 218 52.3
ClCG05G012330 Citrullus lanatus HOM05D004795 ORTHO05D005518 9.2e-37 157.9 215 50.7
CsaV3_3G020240 Cucumis sativus L. HOM05D004795 ORTHO05D005518 9.2e-37 157.9 214 50.0
Thecc.04G132300 Theobroma cacao HOM05D004795 ORTHO05D005518 2.0e-36 156.8 238 50.8
Manes.01G111300 Manihot esculenta HOM05D004795 ORTHO05D005518 2.7e-36 156.4 224 50.0
Hma1.2p1_1109F.1_g258120 Hydrangea macrophylla HOM05D004795 ORTHO05D005518 7.8e-36 154.8 233 48.5
Sabra04G0081300 Salix brachista HOM05D004795 ORTHO05D005518 1.0e-35 154.5 226 49.1
Sabra17G0096100 Salix brachista HOM05D004795 ORTHO05D005518 1.0e-35 154.5 251 46.2
Phvul.008G007200 Phaseolus vulgaris HOM05D004795 ORTHO05D005518 1.7e-35 153.7 187 58.3
Potri.017G116100 Populus trichocarpa HOM05D004795 ORTHO05D005518 1.7e-35 153.7 251 46.6
Eucgr.J01506 Eucalyptus grandis HOM05D004795 ORTHO05D005518 2.3e-35 153.3 203 53.7
Duzib138G0938 Durio zibethinus HOM05D004795 ORTHO05D005518 6.6e-35 151.8 238 49.6
Ah.16g101690 Amaranthus hybridus HOM05D004795 ORTHO05D005518 1.9e-34 150.2 227 44.9
Cpa.g.sc170.57 Carica papaya HOM05D004795 ORTHO05D005518 1.9e-34 150.2 230 50.4
Gohir.D11G325800 Gossypium hirsutum HOM05D004795 ORTHO05D005518 1.9e-34 150.2 218 48.6
VMungo0464G1679 Vigna mungo HOM05D004795 ORTHO05D005518 1.9e-34 150.2 228 50.4
TAR622G0902 Trochodendron aralioides HOM05D004795 ORTHO05D005518 9.5e-34 147.9 216 47.2
Gohir.D11G325700 Gossypium hirsutum HOM05D004795 ORTHO05D005518 2.8e-33 146.4 222 46.8
Glyma.08G366700 Glycine max HOM05D004795 ORTHO05D005518 6.2e-33 145.2 185 55.1
Atru.chr1.1662 Acer truncatum HOM05D004795 ORTHO05D005518 1.1e-32 144.4 225 47.6
VMungo1383G1737 Vigna mungo HOM05D004795 ORTHO05D005518 1.1e-32 144.4 189 55.0
Duzib211G0180 Durio zibethinus HOM05D004795 ORTHO05D005518 1.4e-32 144.1 218 48.2
CAN.G358.61 Capsicum annuum HOM05D004795 ORTHO05D005518 1.8e-32 143.7 92 81.5
TAR371G0696 Trochodendron aralioides HOM05D004795 ORTHO05D005518 2.3e-32 143.3 200 50.0
arahy.Tifrunner.gnm1.ann1.HZ9SBP Arachis hypogaea HOM05D001490 ORTHO05D005518 4.0e-32 142.5 235 47.7
Gohir.D11G326300 Gossypium hirsutum HOM05D004795 ORTHO05D005518 6.8e-32 141.7 235 46.4
MELO3C023735.2 Cucumis melo HOM05D004795 ORTHO05D005518 2.0e-31 140.2 194 50.5
Ciclev10012794m.g Citrus clementina HOM05D004795 ORTHO05D005518 2.2e-30 136.7 227 46.7
RcHm_v2.0_Chr2g0148201 Rosa chinensis HOM05D004795 ORTHO05D005518 8.3e-30 134.8 235 46.0
AUR62043981 Chenopodium quinoa HOM05D004795 ORTHO05D005518 2.4e-29 133.3 267 39.3
Sed0015257 Sechium edule HOM05D004795 ORTHO05D005518 9.2e-29 131.3 217 46.5
Glyma.19G049900 Glycine max HOM05D004795 ORTHO05D005518 1.6e-28 130.6 238 44.1
Lj1g0003158 Lotus japonicus HOM05D004795 ORTHO05D005518 2.7e-28 129.8 190 50.5
Sc11g0008370 Simmondsia chinensis HOM05D004795 ORTHO05D005518 3.5e-28 129.4 192 50.0
HanXRQChr11g0330661 Helianthus annuus HOM05D004795 ORTHO05D005518 4.6e-28 129.0 165 52.1
Glyma.18G295700 Glycine max HOM05D004795 ORTHO05D005518 1.3e-27 127.5 207 50.2
Phvul.004G066100 Phaseolus vulgaris HOM05D004795 ORTHO05D005518 3.9e-27 125.9 237 43.5
Ca_08078_v3 Cicer arietinum L. HOM05D004795 ORTHO05D005518 6.6e-27 125.2 190 51.1
Aa31LG9G17140 Aethionema arabicum HOM05D004795 ORTHO05D005518 1.9e-26 123.6 245 40.4
A04p11270 Brassica napus HOM05D004795 ORTHO05D005518 4.3e-26 122.5 242 40.1
BraA04t16787Z Brassica rapa HOM05D004795 ORTHO05D005518 4.3e-26 122.5 242 40.1
BcaC03g14785 Brassica carinata HOM05D004795 ORTHO05D005518 9.5e-26 121.3 224 40.2
PGR042G3836 Punica granatum HOM05D004795 ORTHO05D005518 9.5e-26 121.3 191 48.2
BolC4t26077H Brassica oleracea HOM05D004795 ORTHO05D005518 1.6e-25 120.6 242 39.7
FAN02G3195 Fragaria x ananassa HOM05D004795 ORTHO05D005518 2.1e-25 120.2 241 44.4
THA.LOC104805574 Tarenaya hassleriana HOM05D004795 ORTHO05D005518 2.1e-25 120.2 249 38.6
FAN05G2248 Fragaria x ananassa HOM05D004795 ORTHO05D005518 3.6e-25 119.4 244 43.9
TPR.G31528 Trifolium pratense HOM05D004795 ORTHO05D005518 3.6e-25 119.4 195 45.1
BolC2t08386H Brassica oleracea HOM05D004795 ORTHO05D005518 4.7e-25 119.0 221 40.3
FAN14G2363 Fragaria x ananassa HOM05D004795 ORTHO05D005518 4.7e-25 119.0 244 43.0
FAN14G5069 Fragaria x ananassa HOM05D004795 ORTHO05D005518 4.7e-25 119.0 244 43.0
BcaB06g27183 Brassica carinata HOM05D004795 ORTHO05D005518 6.2e-25 118.6 241 39.4
AUR62023290 Chenopodium quinoa HOM05D004795 ORTHO05D005518 6.2e-25 118.6 319 34.2
AUR62009011 Chenopodium quinoa HOM05D004795 ORTHO05D005518 1.1e-24 117.9 305 34.1
C04p44990 Brassica napus HOM05D004795 ORTHO05D005518 2.3e-24 116.7 246 38.6
FvH4_6g36230 Fragaria vesca HOM05D004795 ORTHO05D005518 2.3e-24 116.7 246 42.3
THA.LOC104822635 Tarenaya hassleriana HOM05D004795 ORTHO05D005518 2.3e-24 116.7 240 39.6
BcaC02g09641 Brassica carinata HOM05D004795 ORTHO05D005518 4.0e-24 115.9 236 39.4
C02p22330 Brassica napus HOM05D004795 ORTHO05D005518 4.0e-24 115.9 219 39.7
BraA02t06447Z Brassica rapa HOM05D004795 ORTHO05D005518 8.9e-24 114.8 219 40.2
Lj2g0010000 Lotus japonicus HOM05D004795 ORTHO05D005518 8.9e-24 114.8 226 42.0
FAN09G4185 Fragaria x ananassa HOM05D004795 ORTHO05D005518 1.5e-23 114.0 246 41.9
Sp7g03720 Schrenkiella parvula HOM05D004795 ORTHO05D005518 3.4e-23 112.8 240 37.9
A07p33770 Brassica napus HOM05D004795 ORTHO05D005518 1.3e-22 110.9 229 39.3
HanXRQChr11g0325401 Helianthus annuus HOM05D004795 ORTHO05D005518 1.3e-22 110.9 187 45.5
Lalb_Chr10g0091311 Lupinus albus HOM05D004795 ORTHO05D005518 1.7e-22 110.5 189 42.9
Thhalv10027906m.g Eutrema salsugineum HOM05D004795 ORTHO05D005518 2.2e-22 110.2 246 38.6
Aa31LG2G3430 Aethionema arabicum HOM05D004795 ORTHO05D005518 2.9e-22 109.8 249 38.2
BcaB05g24226 Brassica carinata HOM05D004795 ORTHO05D005518 3.7e-22 109.4 243 37.9
ECA232G0641 Erigeron canadensis HOM05D000072 ORTHO05D000026 3.7e-22 109.4 121 60.3
Lalb_Chr02g0158191 Lupinus albus HOM05D004795 ORTHO05D005518 4.9e-22 109.0 191 41.9
Ah.06g188560 Amaranthus hybridus HOM05D004795 ORTHO05D005518 8.3e-22 108.2 163 44.2
Potri.004G098200 Populus trichocarpa HOM05D004795 ORTHO05D005518 1.4e-21 107.5 128 55.5
Gohir.A11G163900 Gossypium hirsutum HOM05D004795 ORTHO05D005518 5.4e-21 105.5 219 42.9
C06p43160 Brassica napus HOM05D004795 ORTHO05D005518 7.1e-21 105.1 233 36.5
Sp5g21970 Schrenkiella parvula HOM05D004795 ORTHO05D005518 7.1e-21 105.1 259 37.5
BolC6t39123H Brassica oleracea HOM05D004795 ORTHO05D005518 1.2e-20 104.4 231 35.9
CAN.G1425.14 Capsicum annuum HOM05D004795 ORTHO05D005518 2.7e-20 103.2 66 81.8
Gorai.007G182000 Gossypium raimondii HOM05D004795 ORTHO05D005518 2.7e-20 103.2 219 42.9
Gorai.008G056400 Gossypium raimondii HOM05D004795 ORTHO05D005518 1.0e-19 101.3 182 44.5
Gohir.A12G054400 Gossypium hirsutum HOM05D004795 ORTHO05D005518 1.7e-19 100.5 179 44.7
AT5G38300 Arabidopsis thaliana HOM05D004795 ORTHO05D005518 2.3e-19 100.1 276 35.5
BraA07t31003Z Brassica rapa HOM05D004795 ORTHO05D005518 3.0e-19 99.8 231 39.0
CARHR214290 Cardamine hirsuta HOM05D004795 ORTHO05D005518 3.0e-19 99.8 229 38.0
Gohir.D12G053200 Gossypium hirsutum HOM05D004795 ORTHO05D005518 3.9e-19 99.4 179 43.6
Medtr7g082230 Medicago truncatula HOM05D004795 ORTHO05D005518 3.9e-19 99.4 190 42.1
Psat3g098240 Pisum sativum HOM05D004795 ORTHO05D005518 6.6e-19 98.6 195 45.1
Thhalv10019032m.g Eutrema salsugineum HOM05D004795 ORTHO05D005518 1.1e-18 97.8 266 35.3
Gorai.007G356700 Gossypium raimondii HOM05D004795 ORTHO05D005518 1.9e-18 97.1 194 40.2
Aqoxy3G00247 Aquilegia oxysepala HOM05D004795 ORTHO05D005518 2.5e-18 96.7 233 37.8
AL7G52500 Arabidopsis lyrata HOM05D004795 ORTHO05D005518 4.3e-18 95.9 272 34.2
AL2G25370 Arabidopsis lyrata HOM05D004795 ORTHO05D005518 5.6e-18 95.5 183 42.1
AT1G67035 Arabidopsis thaliana HOM05D004795 ORTHO05D005518 5.6e-18 95.5 220 37.7
unitig_32.g11886 Utricularia gibba HOM05D004795 ORTHO05D005518 9.6e-18 94.7 207 37.2
Carub.0002s1332 Capsella rubella HOM05D004795 ORTHO05D005518 1.2e-17 94.4 160 44.4
Gorai.001G202200 Gossypium raimondii HOM05D004795 ORTHO05D005518 1.4e-16 90.9 168 42.9
MBI09_g36997_MAGBIO Magnolia biondii HOM05D004795 ORTHO05D005518 3.1e-16 89.7 222 38.7
Psat1g081000 Pisum sativum HOM05D004795 ORTHO05D005518 5.2e-16 89.0 271 34.3
CARHR059450 Cardamine hirsuta HOM05D004795 ORTHO05D005518 8.9e-16 88.2 160 44.4
BcaNung06250 Brassica carinata HOM05D004795 ORTHO05D005518 1.5e-15 87.4 212 35.8
Carub.0005s1274 Capsella rubella HOM05D004795 ORTHO05D005518 2.0e-15 87.0 229 36.2
Gohir.D11G170200 Gossypium hirsutum HOM05D004795 ORTHO05D005518 4.4e-15 85.9 290 33.1
SalBow5G0757 Salvia bowleyana HOM05D004795 ORTHO05D005518 2.2e-14 83.6 88 58.0
SalBow7G1622 Salvia bowleyana HOM05D004795 ORTHO05D005518 2.9e-14 83.2 137 46.7
SalBow7G4115 Salvia bowleyana HOM05D004795 ORTHO05D005518 2.9e-14 83.2 137 46.7
Medtr6g018780 Medicago truncatula HOM05D004795 ORTHO05D005518 3.8e-14 82.8 124 47.6
Actinidia15890 Actinidia chinensis HOM05D004795 ORTHO05D005518 1.4e-13 80.9 181 37.6
PSO532G0010 Papaver somniferum HOM05D004795 ORTHO05D005518 4.2e-13 79.3 153 40.5
TPR.G32442 Trifolium pratense HOM05D004795 ORTHO05D005518 1.6e-12 77.4 330 29.1
PSO541G1476 Papaver somniferum HOM05D004795 ORTHO05D005518 2.7e-12 76.6 200 35.5
ATR0752G028 Amborella trichopoda HOM05D004795 ORTHO05D005518 7.8e-12 75.1 187 34.8
CAN.G358.89 Capsicum annuum HOM05D004795 ORTHO05D005518 3.0e-11 73.2 61 67.2
PSO541G4271 Papaver somniferum HOM05D004795 ORTHO05D005518 5.1e-11 72.4 160 36.9
Gohir.D11G325975 Gossypium hirsutum HOM05D004795 ORTHO05D005518 4.3e-10 69.3 107 46.7
unitig_748.g8746 Utricularia gibba HOM05D004795 ORTHO05D005518 9.6e-10 68.2 129 41.1
SalBow3G3444 Salvia bowleyana HOM05D004795 ORTHO05D005518 2.4e-08 63.5 59 61.0
Thecc.07G096700 Theobroma cacao HOM05D004795 ORTHO05D002259 6.9e-08 62.0 124 44.4


User provided reference genes

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