Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGSC0003DMG402025903 Solanum tuberosum HOM05D005562 ORTHO05D007785 4.3e-231 804.3 404 100.0
Solyc01g108660.4 Solanum lycopersicum HOM05D005562 ORTHO05D007785 1.3e-227 792.7 404 97.5
Sopen01g050880 Solanum pennellii HOM05D005562 ORTHO05D007785 1.7e-227 792.3 404 97.8
PGSC0003DMG401025903 Solanum tuberosum HOM05D005562 ORTHO05D007785 1.9e-218 762.3 404 95.8
CAN.G322.41 Capsicum annuum HOM05D005562 ORTHO05D007785 2.5e-218 761.9 408 94.4
Peaxi162Scf00016g01531 Petunia axillaris HOM05D005562 ORTHO05D007785 1.9e-210 735.7 405 91.6
Nitab4.5_0003726g0070 Nicotiana tabacum HOM05D005562 ORTHO05D007785 1.9e-207 725.7 404 90.6
Nitab4.5_0001401g0050 Nicotiana tabacum HOM05D005562 ORTHO05D007785 7.2e-194 680.6 418 84.2
Lj9A361T59 Lonicera japonica HOM05D005562 ORTHO05D007785 3.3e-183 645.2 405 80.5
Migut.B00304 Erythranthe guttata HOM05D005562 ORTHO05D007785 8.2e-182 640.6 404 80.2
SalBow3G1434 Salvia bowleyana HOM05D005562 ORTHO05D007785 4.5e-180 634.8 404 80.0
Oeu057671.1 Olea europaea HOM05D005562 ORTHO05D007785 6.5e-179 630.9 404 79.2
Dinv23596 Davidia involucrata HOM05D005562 ORTHO05D001378 1.5e-178 629.8 405 78.3
MSTRG.5375 Avicennia marina HOM05D005562 ORTHO05D007785 1.9e-178 629.4 404 79.7
Cc07_g19550 Coffea canephora HOM05D005562 ORTHO05D007785 8.0e-177 624.0 394 79.7
SGA_v2.0_scaffold32G13119 Striga asiatica HOM05D005562 ORTHO05D007785 1.2e-175 620.2 402 78.1
DCAR_022068 Daucus carota HOM05D005562 ORTHO05D001378 6.3e-174 614.4 420 75.0
SalBow4G0329 Salvia bowleyana HOM05D005562 ORTHO05D007785 1.8e-173 612.8 436 72.7
TAR381G1284 Trochodendron aralioides HOM05D005562 ORTHO05D007785 1.2e-172 610.1 406 77.1
CSS0049808 Camellia sinensis var. sinensis HOM05D005562 ORTHO05D007785 3.5e-172 608.6 405 77.5
Hma1.2p1_0584F.1_g183170 Hydrangea macrophylla HOM05D005562 ORTHO05D007785 4.5e-172 608.2 413 75.8
GSVIVG01031808001 Vitis vinifera HOM05D005562 ORTHO05D007785 1.1e-170 603.6 403 77.2
Nn1g04154 Nelumbo nucifera HOM05D005562 ORTHO05D007785 4.2e-170 601.7 406 76.4
unitig_26.g10242 Utricularia gibba HOM05D005562 ORTHO05D007785 7.2e-170 600.9 389 76.9
TAR625G0430 Trochodendron aralioides HOM05D005562 ORTHO05D007785 1.6e-169 599.7 387 78.8
MBI16_g19905_MAGBIO Magnolia biondii HOM05D005562 ORTHO05D007785 2.1e-169 599.4 405 75.6
Ciclev10028560m.g Citrus clementina HOM05D005562 ORTHO05D007785 3.6e-169 598.6 408 75.0
Rhsim05G0079900 Rhododendron simsii HOM05D005562 ORTHO05D007785 3.6e-169 598.6 405 75.6
Eucgr.I01182 Eucalyptus grandis HOM05D005562 ORTHO05D007785 6.1e-169 597.8 404 75.5
Haze_01878 Corylus avellana HOM05D005562 ORTHO05D007785 2.6e-167 592.4 405 75.1
QL11p038618 Quercus lobata HOM05D005562 ORTHO05D007785 2.4e-165 585.9 405 73.6
Cfa005417 Carpinus fangiana HOM05D005562 ORTHO05D007785 7.0e-165 584.3 407 74.0
RcHm_v2.0_Chr6g0259381 Rosa chinensis HOM05D005562 ORTHO05D007785 9.2e-165 583.9 403 74.2
Atru.chr5.2830 Acer truncatum HOM05D005562 ORTHO05D007785 3.5e-164 582.0 406 73.9
ATR0225G001 Amborella trichopoda HOM05D005562 ORTHO05D007785 4.5e-164 581.6 381 76.4
FAN27G1497 Fragaria x ananassa HOM05D005562 ORTHO05D007785 7.8e-164 580.9 406 73.4
Thecc.02G095000 Theobroma cacao HOM05D005562 ORTHO05D007785 2.3e-163 579.3 402 72.6
FvH4_2g07021 Fragaria vesca HOM05D005562 ORTHO05D007785 5.0e-163 578.2 406 73.4
EL10Ac3g06682 Beta vulgaris HOM05D005562 ORTHO05D007785 6.6e-163 577.8 378 75.7
Sp3g33250 Schrenkiella parvula HOM05D005562 ORTHO05D007785 1.1e-162 577.0 405 71.4
AUR62042921 Chenopodium quinoa HOM05D005562 ORTHO05D007785 3.3e-162 575.5 351 80.1
MD10G1088500 Malus domestica HOM05D005562 ORTHO05D007785 4.3e-162 575.1 407 73.7
THA.LOC104814570 Tarenaya hassleriana HOM05D005562 ORTHO05D007785 9.5e-162 573.9 406 72.2
MD00G1050500 Malus domestica HOM05D005562 ORTHO05D007785 1.2e-161 573.5 401 74.3
Prupe.8G115600 Prunus persica HOM05D005562 ORTHO05D007785 1.6e-161 573.2 406 72.7
Duzib248G1341 Durio zibethinus HOM05D005562 ORTHO05D007785 2.1e-161 572.8 402 71.9
Lsat_1_v5_gn_9_108961 Lactuca sativa HOM05D005562 ORTHO05D007785 4.7e-161 571.6 404 69.8
EL10Ac1g01621 Beta vulgaris HOM05D005562 ORTHO05D007785 6.1e-161 571.2 378 75.4
Gohir.D13G035800 Gossypium hirsutum HOM05D005562 ORTHO05D007785 8.0e-161 570.9 402 71.6
PGR142G1983 Punica granatum HOM05D005562 ORTHO05D007785 1.8e-160 569.7 400 72.0
BcaB07g31395 Brassica carinata HOM05D005562 ORTHO05D007785 2.3e-160 569.3 404 71.8
Gohir.A13G037500 Gossypium hirsutum HOM05D005562 ORTHO05D007785 3.0e-160 568.9 402 71.4
Sed0010996 Sechium edule HOM05D005562 ORTHO05D007785 3.0e-160 568.9 402 71.9
Thhalv10023506m.g Eutrema salsugineum HOM05D005562 ORTHO05D007785 5.2e-160 568.2 407 70.5
Carub.0003s3419 Capsella rubella HOM05D005562 ORTHO05D007785 6.8e-160 567.8 405 70.4
Aa31LG8G16860 Aethionema arabicum HOM05D005562 ORTHO05D007785 1.2e-159 567.0 401 72.3
CiPaw.05G055600 Carya illinoinensis HOM05D005562 ORTHO05D007785 3.4e-159 565.5 352 80.4
CARHR110380 Cardamine hirsuta HOM05D005562 ORTHO05D007785 4.4e-159 565.1 407 71.3
BraA09t37197Z Brassica rapa HOM05D005562 ORTHO05D007785 5.7e-159 564.7 404 70.8
MELO3C021919.2 Cucumis melo HOM05D005562 ORTHO05D007785 5.7e-159 564.7 397 73.0
A09p15570 Brassica napus HOM05D005562 ORTHO05D007785 1.3e-158 563.5 404 70.8
BcaC04g22480 Brassica carinata HOM05D005562 ORTHO05D007785 1.7e-158 563.1 406 71.2
BolC9t54784H Brassica oleracea HOM05D005562 ORTHO05D007785 1.7e-158 563.1 406 71.2
PSO170G1474 Papaver somniferum HOM05D005562 ORTHO05D007785 1.7e-158 563.1 404 71.3
HanXRQChr13g0402421 Helianthus annuus HOM05D005562 ORTHO05D007785 2.2e-158 562.8 392 71.4
HanXRQChr16g0528561 Helianthus annuus HOM05D005562 ORTHO05D007785 2.2e-158 562.8 402 71.4
TPR.G14865 Trifolium pratense HOM05D005562 ORTHO05D007785 2.9e-158 562.4 402 70.1
Aqoxy5G01421 Aquilegia oxysepala HOM05D005562 ORTHO05D007785 3.7e-158 562.0 406 70.9
HPP92_018726 Vanilla planifolia HOM05D005562 ORTHO05D007785 1.1e-157 560.5 379 74.4
Manes.15G144000 Manihot esculenta HOM05D005562 ORTHO05D007785 1.4e-157 560.1 406 71.9
CsaV3_2G014210 Cucumis sativus L. HOM05D005562 ORTHO05D007785 2.4e-157 559.3 397 72.3
AT2G19940 Arabidopsis thaliana HOM05D005562 ORTHO05D007785 3.2e-157 558.9 373 75.3
PSO210G1477 Papaver somniferum HOM05D005562 ORTHO05D007785 3.2e-157 558.9 407 70.0
Gorai.013G040500 Gossypium raimondii HOM05D005562 ORTHO05D007785 4.1e-157 558.5 428 67.5
C09p18820 Brassica napus HOM05D005562 ORTHO05D007785 5.4e-157 558.1 406 70.7
TPR.G11154 Trifolium pratense HOM05D005562 ORTHO05D007785 5.4e-157 558.1 344 78.2
ECA240G1421 Erigeron canadensis HOM05D005562 ORTHO05D007785 7.0e-157 557.8 403 68.5
Os03g0617900 Oryza sativa ssp. japonica HOM05D005562 ORTHO05D007785 9.2e-157 557.4 377 73.7
TWI79G1184 Tripterygium wilfordii HOM05D005562 ORTHO05D007785 1.2e-156 557.0 405 70.9
Phvul.003G012000 Phaseolus vulgaris HOM05D005562 ORTHO05D007785 2.7e-156 555.8 352 76.4
VMungo1215G0206 Vigna mungo HOM05D005562 ORTHO05D007785 4.6e-156 555.1 402 69.9
COL.COLO4_11726 Corchorus olitorius HOM05D005562 ORTHO05D007785 5.9e-156 554.7 371 76.0
Ca_12473_v3 Cicer arietinum L. HOM05D005562 ORTHO05D007785 1.7e-155 553.1 352 75.9
Psat6g096120 Pisum sativum HOM05D005562 ORTHO05D007785 1.7e-155 553.1 346 76.6
Potri.004G145700 Populus trichocarpa HOM05D005562 ORTHO05D007785 1.7e-155 553.1 403 70.7
CANSAT25G3890 Cannabis sativa HOM05D005562 ORTHO05D007785 2.3e-155 552.7 352 76.7
Lalb_Chr17g0338301 Lupinus albus HOM05D005562 ORTHO05D007785 8.6e-155 550.8 399 69.4
Medtr1g012540 Medicago truncatula HOM05D005562 ORTHO05D007785 8.6e-155 550.8 344 77.3
Glyma.20G009400 Glycine max HOM05D005562 ORTHO05D007785 2.5e-154 549.3 375 72.5
ClCG09G017590 Citrullus lanatus HOM05D005562 ORTHO05D007785 9.5e-154 547.4 417 69.1
Lj2g0016235 Lotus japonicus HOM05D005562 ORTHO05D007785 1.2e-153 547.0 352 75.3
Glyma.07G179700 Glycine max HOM05D005562 ORTHO05D007785 1.6e-153 546.6 382 71.2
Zm00001eb051410 Zea mays HOM05D005562 ORTHO05D007785 2.1e-153 546.2 380 71.3
arahy.Tifrunner.gnm1.ann1.ZFI36T Arachis hypogaea HOM05D005562 ORTHO05D007785 6.8e-152 541.2 389 70.2
Ah.13g074710 Amaranthus hybridus HOM05D005562 ORTHO05D007785 8.9e-152 540.8 372 75.5
arahy.Tifrunner.gnm1.ann1.4TQ1KW Arachis hypogaea HOM05D005562 ORTHO05D007785 8.9e-152 540.8 430 65.6
CDE01G0106 Ceratophyllum demersum HOM05D005562 ORTHO05D007785 2.6e-151 539.3 327 82.3
Os10g0494200 Oryza sativa ssp. japonica HOM05D005562 ORTHO05D007785 6.4e-150 534.6 373 72.4
Mapoly0036s0058 Marchantia polymorpha HOM05D005562 ORTHO05D007785 8.3e-150 534.3 403 66.3
Pp3c8_22120 Physcomitrium patens HOM05D005562 ORTHO05D007785 4.1e-149 531.9 381 69.6
Pp3c24_19140 Physcomitrium patens HOM05D005562 ORTHO05D007785 1.0e-147 527.3 351 74.1
BcaC04g19978 Brassica carinata HOM05D005562 ORTHO05D007785 5.0e-147 525.0 359 73.8
Sc06g0001440 Simmondsia chinensis HOM05D005562 ORTHO05D007785 5.0e-147 525.0 314 81.5
AagrBONN_evm.TU.Sc2ySwM_117.3897 Anthoceros agrestis HOM05D005562 ORTHO05D007785 1.1e-146 523.9 354 71.8
SMO116G0475 Selaginella moellendorffii HOM05D005562 ORTHO05D007785 5.6e-146 521.5 379 68.9
Thhalv10002012m.g Eutrema salsugineum HOM05D005562 ORTHO05D007785 5.8e-143 511.5 405 64.7
vmacro19466 Vaccinium macrocarpon HOM05D005562 ORTHO05D007785 1.7e-142 510.0 405 68.4
BolC9t57765H Brassica oleracea HOM05D005562 ORTHO05D007785 5.4e-141 505.0 380 68.7
Hund01581 Selenicereus undatus HOM05D005562 ORTHO05D007785 1.0e-139 500.7 467 60.0
AL3G48260 Arabidopsis lyrata HOM05D005562 ORTHO05D007785 2.3e-139 499.6 314 79.6
CBR_g5649 Chara braunii HOM05D005562 ORTHO05D001468 1.2e-137 493.8 343 70.0
FAN27G3443 Fragaria x ananassa HOM05D005562 ORTHO05D001378 8.1e-137 491.1 354 72.0
FAN24G3180 Fragaria x ananassa HOM05D005562 ORTHO05D001378 5.2e-136 488.4 354 71.5
AUR62035865 Chenopodium quinoa HOM05D005562 ORTHO05D007785 4.9e-134 481.9 574 48.6
vmacro23230 Vaccinium macrocarpon HOM05D005562 ORTHO05D007785 8.4e-134 481.1 292 81.5
Cre03.g146187 Chlamydomonas reinhardtii HOM05D005562 ORTHO05D007785 1.4e-128 463.8 380 61.1
PRCOL_00005741 Prasinoderma coloniale HOM05D005562 ORTHO05D007785 2.5e-122 443.0 350 63.1
C09p49210 Brassica napus HOM05D005562 ORTHO05D007785 3.8e-118 429.1 284 75.0
FAN15G1080 Fragaria x ananassa HOM05D005562 ORTHO05D001378 2.2e-110 403.3 362 62.2
Actinidia17846 Actinidia chinensis HOM05D005562 ORTHO05D007785 4.7e-84 315.8 194 81.4
PSO384G1669 Papaver somniferum HOM05D005562 ORTHO05D007785 3.2e-69 266.5 373 44.0
Cpa.g.sc62.58 Carica papaya HOM05D005562 ORTHO05D007785 8.8e-67 258.5 147 81.0
HanXRQChr10g0318401 Helianthus annuus HOM05D005562 ORTHO05D007785 3.3e-66 256.5 222 56.8
DCAR_021731 Daucus carota HOM05D005562 ORTHO05D007785 2.0e-63 247.3 292 51.0
Cpa.g.sc62.56 Carica papaya HOM05D005562 ORTHO05D007785 8.9e-51 205.3 186 61.3
Cpa.g.sc26.106 Carica papaya HOM05D005562 ORTHO05D007785 2.2e-49 200.7 137 70.8
Oeu021926.1 Olea europaea HOM05D005562 ORTHO05D007785 8.6e-46 188.7 112 83.0
Actinidia17880 Actinidia chinensis HOM05D005562 ORTHO05D007785 6.1e-44 182.6 112 79.5
Cfa027024 Carpinus fangiana HOM05D005562 ORTHO05D121372 1.9e-32 144.4 378 29.4
arahy.Tifrunner.gnm1.ann1.Q8AXKZ Arachis hypogaea HOM05D005562 ORTHO05D007785 3.5e-31 140.2 81 77.8
Actinidia17845 Actinidia chinensis HOM05D005562 ORTHO05D030745 3.3e-29 133.7 99 66.7
SEGI_28239 Sequoiadendron giganteum HOM05D005562 ORTHO05D007785 9.2e-24 115.5 66 78.8
CSS0029422 Camellia sinensis var. sinensis HOM05D005562 ORTHO05D111180 3.3e-13 80.5 93 50.5
A10p14750 Brassica napus HOM05D005562 ORTHO05D007785 4.7e-12 76.6 53 71.7
Glyma.08G079000 Glycine max HOM05D005562 ORTHO05D007785 6.4e-09 66.2 45 66.7
Glyma.08G079050 Glycine max HOM05D005562 ORTHO05D213306 1.3e-06 58.5 38 65.8


User provided reference genes

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