Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGSC0003DMG402025785 Solanum tuberosum HOM05D006858 ORTHO05D008767 6.0e-98 361.7 326 100.0
Sopen01g050630 Solanum pennellii HOM05D006858 ORTHO05D008767 4.6e-74 282.3 159 88.7
PGSC0003DMG401025809 Solanum tuberosum HOM05D006858 ORTHO05D008767 4.6e-74 282.3 159 88.7
CAN.G322.19 Capsicum annuum HOM05D006858 ORTHO05D008767 4.6e-66 255.8 160 80.0
Nitab4.5_0005583g0010 Nicotiana tabacum HOM05D006858 ORTHO05D008767 1.4e-62 244.2 157 76.4
Nitab4.5_0004334g0100 Nicotiana tabacum HOM05D006858 ORTHO05D008767 5.3e-62 242.3 159 75.5
Peaxi162Scf00016g00164 Petunia axillaris HOM05D006858 ORTHO05D008767 1.9e-59 233.8 150 77.3
QL11p037400 Quercus lobata HOM05D006858 ORTHO05D008767 9.7e-48 194.9 153 59.5
CSS0006454 Camellia sinensis var. sinensis HOM05D006858 ORTHO05D008767 1.8e-46 190.7 151 60.3
CSS0049463 Camellia sinensis var. sinensis HOM05D006858 ORTHO05D008767 1.8e-46 190.7 151 60.3
Atru.chr5.2775 Acer truncatum HOM05D006858 ORTHO05D008767 5.3e-46 189.1 152 57.2
CiPaw.06G142100 Carya illinoinensis HOM05D006858 ORTHO05D008767 1.5e-45 187.6 153 57.5
Dinv23584 Davidia involucrata HOM05D006858 ORTHO05D008767 2.0e-45 187.2 153 58.2
VMungo1215G0504 Vigna mungo HOM05D006858 ORTHO05D008767 3.4e-45 186.4 153 57.5
Ciclev10028118m.g Citrus clementina HOM05D006858 ORTHO05D008767 5.9e-45 185.7 154 55.2
Haze_01905 Corylus avellana HOM05D006858 ORTHO05D008767 7.6e-45 185.3 153 55.6
AUR62016628 Chenopodium quinoa HOM05D006858 ORTHO05D008767 1.7e-44 184.1 152 57.9
TAR628G1172 Trochodendron aralioides HOM05D006858 ORTHO05D008767 1.7e-44 184.1 153 56.9
Eucgr.I01171 Eucalyptus grandis HOM05D006858 ORTHO05D008767 2.2e-44 183.7 154 51.9
AUR62011433 Chenopodium quinoa HOM05D006858 ORTHO05D008767 5.0e-44 182.6 153 56.9
Cfa005452 Carpinus fangiana HOM05D006858 ORTHO05D008767 6.5e-44 182.2 153 54.2
Gohir.D02G212500 Gossypium hirsutum HOM05D006858 ORTHO05D008767 6.5e-44 182.2 150 58.0
Duzib132G0284 Durio zibethinus HOM05D006858 ORTHO05D008767 8.5e-44 181.8 149 57.0
TWI31G0517 Tripterygium wilfordii HOM05D006858 ORTHO05D008767 8.5e-44 181.8 153 56.2
RcHm_v2.0_Chr6g0258901 Rosa chinensis HOM05D006858 ORTHO05D008767 1.1e-43 181.4 152 55.3
THA.LOC104804370 Tarenaya hassleriana HOM05D006858 ORTHO05D008767 1.1e-43 181.4 147 57.8
Migut.N01200 Erythranthe guttata HOM05D006858 ORTHO05D008767 1.4e-43 181.0 152 53.3
EL10Ac9g21827 Beta vulgaris HOM05D006858 ORTHO05D008767 1.9e-43 180.6 152 57.2
MSTRG.27720 Avicennia marina HOM05D006858 ORTHO05D008767 2.5e-43 180.3 153 54.2
Phvul.003G012700 Phaseolus vulgaris HOM05D006858 ORTHO05D008767 2.5e-43 180.3 149 56.4
Sc08g0000040 Simmondsia chinensis HOM05D006858 ORTHO05D008767 3.2e-43 179.9 154 52.6
Gohir.A03G191600 Gossypium hirsutum HOM05D006858 ORTHO05D008767 4.2e-43 179.5 150 56.7
HanXRQChr10g0303231 Helianthus annuus HOM05D006858 ORTHO05D008767 4.2e-43 179.5 153 54.2
vmacro13394 Vaccinium macrocarpon HOM05D006858 ORTHO05D008767 4.2e-43 179.5 151 56.3
ECA234G1772 Erigeron canadensis HOM05D006858 ORTHO05D008767 5.5e-43 179.1 153 52.3
FAN27G2753 Fragaria x ananassa HOM05D006858 ORTHO05D008767 5.5e-43 179.1 151 55.0
Manes.17G093600 Manihot esculenta HOM05D006858 ORTHO05D008767 5.5e-43 179.1 150 54.0
FAN20G2333 Fragaria x ananassa HOM05D006858 ORTHO05D008767 7.2e-43 178.7 154 53.9
arahy.Tifrunner.gnm1.ann1.3PJ361 Arachis hypogaea HOM05D006858 ORTHO05D008767 9.4e-43 178.3 153 52.9
arahy.Tifrunner.gnm1.ann1.U9N0YZ Arachis hypogaea HOM05D006858 ORTHO05D008767 9.4e-43 178.3 153 52.9
PGR142G0738 Punica granatum HOM05D006858 ORTHO05D008767 9.4e-43 178.3 154 52.6
FvH4_2g06720 Fragaria vesca HOM05D006858 ORTHO05D008767 1.2e-42 177.9 151 55.0
FAN24G1409 Fragaria x ananassa HOM05D006858 ORTHO05D008767 1.2e-42 177.9 151 55.0
DCAR_022059 Daucus carota HOM05D006858 ORTHO05D008767 1.6e-42 177.6 151 53.6
Oeu013687.1 Olea europaea HOM05D006858 ORTHO05D008767 1.6e-42 177.6 138 60.1
Potri.009G105600 Populus trichocarpa HOM05D006858 ORTHO05D008767 1.6e-42 177.6 152 53.9
Glyma.20G010100 Glycine max HOM05D006858 ORTHO05D008767 2.7e-42 176.8 149 54.4
Lalb_Chr10g0095481 Lupinus albus HOM05D006858 ORTHO05D008767 2.7e-42 176.8 153 54.9
Rhsim05G0081400 Rhododendron simsii HOM05D006858 ORTHO05D008767 2.7e-42 176.8 151 55.0
Lsat_1_v5_gn_5_113361 Lactuca sativa HOM05D006858 ORTHO05D008767 3.6e-42 176.4 153 52.3
FAN15G2218 Fragaria x ananassa HOM05D006858 ORTHO05D008767 4.6e-42 176.0 153 53.6
CANSAT25G3187 Cannabis sativa HOM05D006858 ORTHO05D008767 6.1e-42 175.6 154 53.9
Thecc.02G097300 Theobroma cacao HOM05D006858 ORTHO05D008767 1.4e-41 174.5 150 52.7
MD10G1090200 Malus domestica HOM05D006858 ORTHO05D008767 1.8e-41 174.1 152 53.9
Sabra09G0080800 Salix brachista HOM05D006858 ORTHO05D008767 1.8e-41 174.1 152 52.6
Nn4g22909 Nelumbo nucifera HOM05D006858 ORTHO05D008767 3.3e-40 169.9 148 52.0
Ah.01g020130 Amaranthus hybridus HOM05D006858 ORTHO05D008767 6.3e-39 165.6 149 51.7
Lj2g0007949 Lotus japonicus HOM05D006858 ORTHO05D008767 6.3e-39 165.6 153 51.6
Prupe.7G039700 Prunus persica HOM05D006858 ORTHO05D008767 8.2e-39 165.2 151 51.0
Sed0026070 Sechium edule HOM05D006858 ORTHO05D008767 1.1e-38 164.9 149 53.7
ClCG02G005770 Citrullus lanatus HOM05D006858 ORTHO05D008767 1.4e-38 164.5 148 52.7
Sp7g02300 Schrenkiella parvula HOM05D006858 ORTHO05D008767 3.1e-38 163.3 148 50.7
Aa31LG9G16400 Aethionema arabicum HOM05D006858 ORTHO05D008767 1.2e-37 161.4 148 52.0
Ca_12460_v3 Cicer arietinum L. HOM05D006858 ORTHO05D008767 1.2e-37 161.4 149 51.0
Ca_29767_v3 Cicer arietinum L. HOM05D006858 ORTHO05D008767 1.2e-37 161.4 149 51.0
Aqoxy6G01416 Aquilegia oxysepala HOM05D006858 ORTHO05D008767 1.5e-37 161.0 153 47.7
C04p46110 Brassica napus HOM05D006858 ORTHO05D008767 2.0e-37 160.6 148 48.6
BolC4t26195H Brassica oleracea HOM05D006858 ORTHO05D008767 2.0e-37 160.6 148 48.6
Psat6g096520 Pisum sativum HOM05D006858 ORTHO05D008767 2.6e-37 160.2 149 52.3
AT5G39710 Arabidopsis thaliana HOM05D006858 ORTHO05D008767 3.4e-37 159.8 147 51.0
Thhalv10027654m.g Eutrema salsugineum HOM05D006858 ORTHO05D008767 7.7e-37 158.7 147 49.7
BcaB06g27362 Brassica carinata HOM05D006858 ORTHO05D008767 1.7e-36 157.5 149 49.7
Medtr1g033960 Medicago truncatula HOM05D006858 ORTHO05D008767 2.2e-36 157.1 149 49.7
TAR633G1647 Trochodendron aralioides HOM05D006858 ORTHO05D008767 3.8e-36 156.4 153 51.0
COL.COLO4_32688 Corchorus olitorius HOM05D006858 ORTHO05D008767 5.0e-36 156.0 150 50.7
SGA_v2.0_scaffold13G06572 Striga asiatica HOM05D006858 ORTHO05D008767 8.5e-36 155.2 152 49.3
TPR.G11140 Trifolium pratense HOM05D006858 ORTHO05D008767 8.5e-36 155.2 149 49.7
Gorai.005G240500 Gossypium raimondii HOM05D006858 ORTHO05D008767 1.1e-35 154.8 134 54.5
SHI05381 Sapria himalayana HOM05D006858 ORTHO05D008767 1.4e-35 154.5 149 48.3
RcHm_v2.0_Chr7g0233241 Rosa chinensis HOM05D006858 ORTHO05D008767 1.9e-35 154.1 152 51.3
GSVIVG01031787001 Vitis vinifera HOM05D006858 ORTHO05D008767 3.2e-35 153.3 134 52.2
MELO3C018437.2 Cucumis melo HOM05D006858 ORTHO05D008767 1.2e-34 151.4 147 49.7
CsaV3_7G008750 Cucumis sativus L. HOM05D006858 ORTHO05D008767 1.6e-34 151.0 147 49.7
A04p12420 Brassica napus HOM05D006858 ORTHO05D008767 1.0e-33 148.3 148 47.3
BraA04t16905Z Brassica rapa HOM05D006858 ORTHO05D008767 1.0e-33 148.3 148 47.3
Lj9A359T74 Lonicera japonica HOM05D006858 ORTHO05D008767 1.4e-33 147.9 154 48.1
CDE09G0572 Ceratophyllum demersum HOM05D006858 ORTHO05D008767 7.4e-32 142.1 142 47.2
Zm00001eb376700 Zea mays HOM05D006858 ORTHO05D008767 5.9e-29 132.5 146 46.6
Os06g0152500 Oryza sativa ssp. japonica HOM05D006858 ORTHO05D008767 1.1e-27 128.3 147 42.9
Cpa.g.sc62.38 Carica papaya HOM05D006858 ORTHO05D008767 2.8e-23 113.6 141 41.8
Carub.0007s3617 Capsella rubella HOM05D006858 ORTHO05D008767 3.8e-20 103.2 147 37.4
Prupe.8G118500 Prunus persica HOM05D006858 ORTHO05D008767 5.0e-20 102.8 131 42.0
Zm00001eb348200 Zea mays HOM05D006858 ORTHO05D008767 1.5e-19 101.3 145 37.9
Actinidia17852 Actinidia chinensis HOM05D006858 ORTHO05D008767 8.0e-18 95.5 121 39.7
CAN.G322.17 Capsicum annuum HOM05D002196 ORTHO05D011452 1.8e-14 84.3 50 84.0
ATR0043G025 Amborella trichopoda HOM05D006858 ORTHO05D008767 5.3e-14 82.8 85 45.9
Solyc01g108410.3 Solanum lycopersicum HOM05D006858 ORTHO05D008767 3.2e-11 73.6 36 97.2
ATR1120G070 Amborella trichopoda HOM05D006858 ORTHO05D008767 7.2e-11 72.4 53 58.5
HPP92_006001 Vanilla planifolia HOM05D006858 ORTHO05D008767 3.6e-10 70.1 69 46.4
AL7G50600 Arabidopsis lyrata HOM05D006858 ORTHO05D008767 6.1e-10 69.3 48 62.5
TPR.G40260 Trifolium pratense HOM05D006858 ORTHO05D008767 2.2e-07 60.8 115 33.0


User provided reference genes

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