Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGSC0003DMG402023117 Solanum tuberosum HOM05D008013 ORTHO05D010149 1.9e-47 192.2 97 100.0
Solyc04g150139.1 Solanum lycopersicum HOM05D008013 ORTHO05D010149 3.9e-21 104.8 79 74.7
CAN.G4.29 Capsicum annuum HOM05D008013 ORTHO05D010149 5.3e-18 94.4 80 67.5
Actinidia34775 Actinidia chinensis HOM05D008013 ORTHO05D010149 5.8e-17 90.9 79 64.6
Cc09_g03310 Coffea canephora HOM05D008013 ORTHO05D010149 7.6e-17 90.5 80 61.2
Dinv02912 Davidia involucrata HOM05D008013 ORTHO05D010149 1.7e-16 89.4 80 63.8
Sed0019978 Sechium edule HOM05D008013 ORTHO05D010149 2.2e-16 89.0 80 56.2
Manes.09G183801 Manihot esculenta HOM05D008013 ORTHO05D010149 4.9e-16 87.8 79 60.8
CSS0003713 Camellia sinensis var. sinensis HOM05D008013 ORTHO05D010149 8.4e-16 87.0 85 58.8
CSS0043393 Camellia sinensis var. sinensis HOM05D008013 ORTHO05D010149 8.4e-16 87.0 85 58.8
CiPaw.08G117300 Carya illinoinensis HOM05D008013 ORTHO05D010149 8.4e-16 87.0 89 51.7
Haze_04520 Corylus avellana HOM05D008013 ORTHO05D010149 1.1e-15 86.7 86 55.8
MD04G1240900 Malus domestica HOM05D008013 ORTHO05D010149 1.1e-15 86.7 80 60.0
Rhsim09G0131000 Rhododendron simsii HOM05D008013 ORTHO05D010149 1.4e-15 86.3 79 59.5
CsaV3_5G032690 Cucumis sativus L. HOM05D008013 ORTHO05D010149 1.9e-15 85.9 80 55.0
Lalb_Chr19g0126801 Lupinus albus HOM05D008013 ORTHO05D010149 1.9e-15 85.9 89 53.9
TPR.G29412 Trifolium pratense HOM05D008013 ORTHO05D010149 1.9e-15 85.9 85 52.9
Lj1g0002079 Lotus japonicus HOM05D008013 ORTHO05D010149 5.5e-15 84.3 85 54.1
MD12G1257800 Malus domestica HOM05D008013 ORTHO05D010149 5.5e-15 84.3 85 52.9
Thecc.05G204600 Theobroma cacao HOM05D008013 ORTHO05D010149 5.5e-15 84.3 85 54.1
THA.LOC104803516 Tarenaya hassleriana HOM05D008013 ORTHO05D010149 7.1e-15 84.0 86 54.7
Oeu001239.1 Olea europaea HOM05D008013 ORTHO05D010149 9.3e-15 83.6 89 52.8
RcHm_v2.0_Chr3g0448311 Rosa chinensis HOM05D008013 ORTHO05D010149 9.3e-15 83.6 85 54.1
Migut.F02069 Erythranthe guttata HOM05D008013 ORTHO05D010149 1.2e-14 83.2 89 50.6
Gohir.A08G224100 Gossypium hirsutum HOM05D008013 ORTHO05D010149 3.5e-14 81.6 80 56.2
Gohir.D08G244400 Gossypium hirsutum HOM05D008013 ORTHO05D010149 3.5e-14 81.6 80 56.2
HanXRQChr11g0333671 Helianthus annuus HOM05D008013 ORTHO05D010149 3.5e-14 81.6 58 67.2
Phvul.008G056200 Phaseolus vulgaris HOM05D008013 ORTHO05D010149 6.0e-14 80.9 85 51.8
FAN05G0262 Fragaria x ananassa HOM05D008013 ORTHO05D010149 1.3e-13 79.7 50 76.0
Sed0019520 Sechium edule HOM05D008013 ORTHO05D010149 2.3e-13 79.0 57 66.7
GSVIVG01019150001 Vitis vinifera HOM05D008013 ORTHO05D010149 3.0e-13 78.6 85 52.9
Glyma.09G252532 Glycine max HOM05D008013 ORTHO05D010149 5.1e-13 77.8 82 48.8
Glyma.18G240151 Glycine max HOM05D008013 ORTHO05D010149 5.1e-13 77.8 82 50.0
TWI59G0485 Tripterygium wilfordii HOM05D008013 ORTHO05D010149 6.7e-13 77.4 58 65.5
EL10Ac4g09411 Beta vulgaris HOM05D008013 ORTHO05D010149 8.7e-13 77.0 79 53.2
Nn1g08299 Nelumbo nucifera HOM05D008013 ORTHO05D010149 3.3e-12 75.1 85 49.4
Carub.0007s1021 Capsella rubella HOM05D008013 ORTHO05D010149 4.3e-12 74.7 84 44.0
Sp7g28270 Schrenkiella parvula HOM05D008013 ORTHO05D010149 7.4e-12 73.9 84 42.9
AT4G30390 Arabidopsis thaliana HOM05D008013 ORTHO05D010149 1.3e-11 73.2 90 41.1
BcaNung00543 Brassica carinata HOM05D008013 ORTHO05D010149 1.3e-11 73.2 90 38.9
Gohir.D13G159800 Gossypium hirsutum HOM05D008013 ORTHO05D010149 1.6e-11 72.8 82 48.8
AL7G21760 Arabidopsis lyrata HOM05D008013 ORTHO05D010149 2.2e-11 72.4 84 42.9
A08p19260 Brassica napus HOM05D008013 ORTHO05D010149 2.2e-11 72.4 84 41.7
BraA08t33887Z Brassica rapa HOM05D008013 ORTHO05D010149 2.2e-11 72.4 84 41.7
Hund07321 Selenicereus undatus HOM05D008013 ORTHO05D010149 2.2e-11 72.4 72 58.3
Atru.chr12.2150 Acer truncatum HOM05D008013 ORTHO05D010149 2.8e-11 72.0 72 54.2
Aa31LG2G20150 Aethionema arabicum HOM05D008013 ORTHO05D010149 2.8e-11 72.0 84 44.0
C07p57840 Brassica napus HOM05D008013 ORTHO05D010149 2.8e-11 72.0 84 40.5
BolC7t46244H Brassica oleracea HOM05D008013 ORTHO05D010149 2.8e-11 72.0 84 40.5
ClCG10G008070 Citrullus lanatus HOM05D000837 ORTHO05D008386 2.8e-11 72.0 44 77.3
Ciclev10013456m.g Citrus clementina HOM05D008013 ORTHO05D010149 2.8e-11 72.0 78 52.6
A03p59800 Brassica napus HOM05D008013 ORTHO05D010149 4.8e-11 71.2 84 39.3
Thhalv10026665m.g Eutrema salsugineum HOM05D008013 ORTHO05D010149 6.3e-11 70.9 84 45.2
CARHR238290 Cardamine hirsuta HOM05D008013 ORTHO05D010149 8.2e-11 70.5 49 61.2
vmacro10397 Vaccinium macrocarpon HOM05D000837 ORTHO05D008386 8.2e-11 70.5 80 55.0
Gohir.A13G155000 Gossypium hirsutum HOM05D008013 ORTHO05D010149 1.1e-10 70.1 82 47.6
unitig_736.g22502 Utricularia gibba HOM05D008013 ORTHO05D010149 1.1e-10 70.1 82 48.8
BraA03t15033Z Brassica rapa HOM05D008013 ORTHO05D010149 2.4e-10 68.9 57 50.9
FAN09G3946 Fragaria x ananassa HOM05D000837 ORTHO05D008386 2.4e-10 68.9 49 67.3
Potri.019G051850 Populus trichocarpa HOM05D008013 ORTHO05D010149 2.4e-10 68.9 72 52.8
HanXRQChr05g0156911 Helianthus annuus HOM05D000837 ORTHO05D008386 3.1e-10 68.6 79 49.4
Sc16g0010260 Simmondsia chinensis HOM05D008013 ORTHO05D010149 3.1e-10 68.6 44 77.3
MBI07_g00621_MAGBIO Magnolia biondii HOM05D000837 ORTHO05D008386 4.1e-10 68.2 63 57.1
PGR119G0441 Punica granatum HOM05D000837 ORTHO05D008386 5.3e-10 67.8 78 50.0
TAR109G0001 Trochodendron aralioides HOM05D008013 ORTHO05D010149 5.3e-10 67.8 42 78.6
Ah.06g195780 Amaranthus hybridus HOM05D008013 ORTHO05D010149 6.9e-10 67.4 79 50.6
Gorai.004G260700 Gossypium raimondii HOM05D008013 ORTHO05D010149 9.0e-10 67.0 73 52.1
Sabra19G0056800 Salix brachista HOM05D008013 ORTHO05D010149 1.5e-09 66.2 48 66.7
CANSAT54G1767 Cannabis sativa HOM05D000837 ORTHO05D008386 2.0e-09 65.9 82 40.2
arahy.Tifrunner.gnm1.ann1.L7M8PN Arachis hypogaea HOM05D008013 ORTHO05D010149 2.9e-08 62.0 68 50.0
PSO170G5632 Papaver somniferum HOM05D000837 ORTHO05D008386 2.9e-08 62.0 84 41.7
PSO357G0534 Papaver somniferum HOM05D008013 ORTHO05D010149 2.9e-08 62.0 84 41.7
Pp3c1_15100 Physcomitrium patens HOM05D008013 ORTHO05D010149 8.5e-08 60.5 71 38.0
SHI02464 Sapria himalayana HOM05D008013 ORTHO05D010149 8.5e-08 60.5 72 47.2
BcaB03g12645 Brassica carinata HOM05D008013 ORTHO05D010149 1.4e-07 59.7 85 37.6
BcaC01g01153 Brassica carinata HOM05D008013 ORTHO05D010149 1.4e-07 59.7 44 56.8
Hund21874 Selenicereus undatus HOM05D008013 ORTHO05D010149 9.3e-07 57.0 55 58.2


User provided reference genes

Program Settings